Wall clock time and date at job start Sun Mar 29 2020 22:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37101 * 119.99688 * 2 1 4 4 H 1.08004 * 119.99958 * 201.37578 * 3 2 1 5 5 C 1.38942 * 120.00491 * 21.37017 * 3 2 1 6 6 N 1.31420 * 119.99733 * 12.29369 * 5 3 2 7 7 Si 1.86798 * 120.00570 * 192.28765 * 5 3 2 8 8 H 1.48504 * 109.46777 * 85.05384 * 7 5 3 9 9 H 1.48498 * 109.47518 * 205.05109 * 7 5 3 10 10 H 1.48498 * 109.46928 * 325.05865 * 7 5 3 11 11 C 1.34777 * 120.00229 * 180.02562 * 2 1 3 12 12 O 1.21292 * 119.99815 * 179.97438 * 11 2 1 13 13 C 1.50699 * 119.99901 * 359.97438 * 11 2 1 14 14 H 1.09003 * 109.47769 * 54.99998 * 13 11 2 15 15 C 1.53094 * 109.48832 * 294.96980 * 13 11 2 16 16 C 1.53177 * 109.16254 * 182.40437 * 15 13 11 17 17 C 1.53177 * 109.03867 * 56.97823 * 16 15 13 18 18 C 1.53097 * 109.16414 * 303.02188 * 17 16 15 19 19 O 1.42898 * 109.48111 * 175.02245 * 13 11 2 20 20 H 1.09000 * 109.47244 * 272.95862 * 1 2 3 21 21 H 1.08992 * 109.47616 * 32.95904 * 1 2 3 22 22 H 1.09000 * 109.47086 * 152.96020 * 1 2 3 23 23 H 0.96996 * 120.00253 * 179.97438 * 6 5 3 24 24 H 1.08995 * 109.52430 * 302.30874 * 15 13 11 25 25 H 1.09000 * 109.52194 * 62.49950 * 15 13 11 26 26 H 1.09003 * 109.53951 * 297.11343 * 16 15 13 27 27 H 1.08996 * 109.61566 * 176.89162 * 16 15 13 28 28 H 1.08998 * 109.52192 * 183.11337 * 17 16 15 29 29 H 1.09000 * 109.56923 * 62.95685 * 17 16 15 30 30 H 1.08993 * 109.47910 * 297.62277 * 18 17 16 31 31 H 1.08996 * 109.47756 * 177.58553 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.1747 1.2196 -0.3409 5 6 1.5274 2.3493 0.4384 6 7 0.3792 2.2795 1.0741 7 14 2.3216 4.0106 0.1246 8 1 1.9458 4.4910 -1.2294 9 1 1.8522 4.9841 1.1431 10 1 3.7981 3.8775 0.2104 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1671 -0.0010 13 6 1.3854 -2.4723 -0.0005 14 1 0.6929 -2.4922 -0.8421 15 6 0.6029 -2.6103 1.3081 16 6 -0.1116 -3.9651 1.3262 17 6 0.9247 -5.0790 1.1482 18 6 1.6948 -4.8456 -0.1542 19 8 2.3094 -3.5560 -0.1180 20 1 -0.3634 0.0530 1.0263 21 1 -0.3634 0.8622 -0.5590 22 1 -0.3633 -0.9153 -0.4672 23 1 -0.0556 3.0906 1.3805 24 1 1.2904 -2.5498 2.1517 25 1 -0.1330 -1.8093 1.3786 26 1 -0.8350 -4.0066 0.5119 27 1 -0.6264 -4.0946 2.2782 28 1 0.4188 -6.0435 1.1045 29 1 1.6188 -5.0694 1.9885 30 1 1.0063 -4.8966 -0.9976 31 1 2.4626 -5.6113 -0.2646 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050963405.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:47 Heat of formation + Delta-G solvation = -99.354210 kcal Electronic energy + Delta-G solvation = -14916.207681 eV Core-core repulsion = 12390.034677 eV Total energy + Delta-G solvation = -2526.173004 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.12810 -39.25431 -36.72902 -34.62723 -33.76255 -32.11274 -28.32664 -27.22829 -25.61279 -24.62008 -21.44051 -20.91393 -18.97546 -18.16238 -17.17350 -16.78640 -16.38147 -16.18168 -15.59574 -15.33002 -14.94702 -14.53693 -14.04151 -13.58030 -13.44123 -13.17187 -13.10486 -12.66923 -12.52624 -12.30015 -12.14514 -12.02340 -11.83726 -11.31257 -11.01310 -10.45758 -10.19360 -9.74849 -8.35717 -6.01391 1.36676 1.40290 1.52234 1.93843 2.19288 2.56607 3.04938 3.38456 3.78631 3.88342 3.92984 4.08202 4.09324 4.27320 4.51121 4.57853 4.68522 4.84811 4.91227 5.00486 5.07529 5.10671 5.18966 5.37783 5.40101 5.42320 5.98919 6.26670 6.50795 7.13593 7.39877 7.97760 8.65695 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.059631 B = 0.008524 C = 0.007766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.440509 B = 3284.049589 C = 3604.446078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.455 5.455 3 C -0.350 4.350 4 H 0.069 0.931 5 C 0.001 3.999 6 N -0.892 5.892 7 Si 0.992 3.008 8 H -0.263 1.263 9 H -0.269 1.269 10 H -0.279 1.279 11 C 0.434 3.566 12 O -0.629 6.629 13 C 0.096 3.904 14 H 0.091 0.909 15 C -0.146 4.146 16 C -0.113 4.113 17 C -0.153 4.153 18 C 0.046 3.954 19 O -0.395 6.395 20 H 0.056 0.944 21 H 0.055 0.945 22 H 0.067 0.933 23 H 0.276 0.724 24 H 0.045 0.955 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.107 0.893 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.328 -10.258 -0.642 12.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.175 5.175 3 C -0.478 4.478 4 H 0.086 0.914 5 C -0.201 4.201 6 N -0.531 5.531 7 Si 0.815 3.185 8 H -0.188 1.188 9 H -0.194 1.194 10 H -0.204 1.204 11 C 0.223 3.777 12 O -0.516 6.516 13 C 0.035 3.965 14 H 0.108 0.892 15 C -0.184 4.184 16 C -0.150 4.150 17 C -0.190 4.190 18 C -0.030 4.030 19 O -0.314 6.314 20 H 0.074 0.926 21 H 0.074 0.926 22 H 0.085 0.915 23 H 0.086 0.914 24 H 0.064 0.936 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.125 0.875 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.721 -10.083 -0.564 12.131 hybrid contribution 0.382 1.003 0.040 1.074 sum -6.339 -9.080 -0.523 11.086 Atomic orbital electron populations 1.21627 0.78923 1.00111 1.01619 1.43753 1.06956 1.04092 1.62670 1.19626 0.98794 0.85481 1.43877 0.91351 1.26080 0.97010 1.02707 0.94310 1.70054 1.17419 1.30486 1.35097 0.84976 0.78055 0.76720 0.78731 1.18844 1.19356 1.20423 1.20769 0.87900 0.86033 0.82974 1.90467 1.16439 1.87866 1.56857 1.21680 0.90249 0.85099 0.99456 0.89203 1.22215 0.99568 1.01069 0.95537 1.21613 0.97620 0.91672 1.04103 1.22203 0.98525 1.00363 0.97911 1.22966 0.98506 0.83612 0.97867 1.88022 1.33873 1.14925 1.94568 0.92580 0.92597 0.91460 0.91449 0.93567 0.89460 0.89641 0.89468 0.87512 0.92382 0.91462 0.87542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.29 7.16 127.77 0.92 6.20 16 2 N -0.46 -24.59 3.02 -658.91 -1.99 -26.58 16 3 C -0.35 -20.71 9.31 84.04 0.78 -19.93 16 4 H 0.07 4.37 7.39 -2.91 -0.02 4.35 16 5 C 0.00 0.06 5.11 84.92 0.43 0.50 16 6 N -0.89 -47.09 10.59 21.66 0.23 -46.86 16 7 Si 0.99 43.07 29.57 68.60 2.03 45.10 16 8 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 9 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 11 C 0.43 23.40 7.05 87.66 0.62 24.01 16 12 O -0.63 -40.18 16.19 15.92 0.26 -39.92 16 13 C 0.10 3.86 2.24 29.88 0.07 3.92 16 14 H 0.09 3.11 7.14 -2.39 -0.02 3.09 16 15 C -0.15 -4.90 5.10 30.68 0.16 -4.74 16 16 C -0.11 -2.56 6.03 30.71 0.19 -2.38 16 17 C -0.15 -3.30 6.14 30.69 0.19 -3.11 16 18 C 0.05 1.21 6.84 72.01 0.49 1.70 16 19 O -0.39 -15.97 9.94 -130.00 -1.29 -17.27 16 20 H 0.06 2.53 6.63 -2.39 -0.02 2.51 16 21 H 0.06 2.59 7.06 -2.39 -0.02 2.57 16 22 H 0.07 2.36 5.84 -2.39 -0.01 2.35 16 23 H 0.28 13.52 8.31 -92.71 -0.77 12.75 16 24 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.09 2.91 5.23 -2.39 -0.01 2.90 16 26 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -73.49 250.20 4.19 -69.30 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 1.12 Total: 10.05 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 3.84 Total: 6.17 kcal Atomic # 7 Polarization: -71.68 SS G_CDS: -1.76 Total: -73.44 kcal Atomic # 8 Polarization: -56.15 SS G_CDS: -1.03 Total: -57.19 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -73.49 4.19 -69.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050963405.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.052 kcal (2) G-P(sol) polarization free energy of solvation -73.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds