Wall clock time and date at job start Sun Mar 29 2020 22:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37103 * 119.99874 * 2 1 4 4 H 1.08001 * 119.99749 * 155.65873 * 3 2 1 5 5 C 1.38950 * 119.99812 * 335.65901 * 3 2 1 6 6 N 1.31412 * 119.99934 * 330.95268 * 5 3 2 7 7 Si 1.86807 * 119.99876 * 150.95721 * 5 3 2 8 8 H 1.48497 * 109.46823 * 179.97438 * 7 5 3 9 9 H 1.48499 * 109.47099 * 59.99829 * 7 5 3 10 10 H 1.48496 * 109.47094 * 300.00018 * 7 5 3 11 11 C 1.34778 * 120.00055 * 179.97438 * 2 1 3 12 12 O 1.21298 * 119.99697 * 180.02562 * 11 2 1 13 13 C 1.50693 * 119.99960 * 0.02562 * 11 2 1 14 14 H 1.09002 * 109.48476 * 304.97401 * 13 11 2 15 15 C 1.53096 * 109.48036 * 65.00015 * 13 11 2 16 16 C 1.53181 * 109.16032 * 177.58972 * 15 13 11 17 17 C 1.53175 * 109.03875 * 303.01849 * 16 15 13 18 18 C 1.53094 * 109.16144 * 56.98053 * 17 16 15 19 19 O 1.42902 * 109.47826 * 184.94129 * 13 11 2 20 20 H 1.09001 * 109.46978 * 93.10147 * 1 2 3 21 21 H 1.09002 * 109.47605 * 213.09464 * 1 2 3 22 22 H 1.09000 * 109.47382 * 333.09898 * 1 2 3 23 23 H 0.96999 * 119.99968 * 353.70870 * 6 5 3 24 24 H 1.09001 * 109.52276 * 297.49504 * 15 13 11 25 25 H 1.08993 * 109.52185 * 57.62476 * 15 13 11 26 26 H 1.08993 * 109.54274 * 62.88726 * 16 15 13 27 27 H 1.09007 * 109.53672 * 183.06206 * 16 15 13 28 28 H 1.08995 * 109.52170 * 176.88767 * 17 16 15 29 29 H 1.09003 * 109.51855 * 297.07539 * 17 16 15 30 30 H 1.08996 * 109.47767 * 62.38077 * 18 17 16 31 31 H 1.09003 * 109.47749 * 182.39940 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1585 1.2289 0.3855 5 6 1.5483 2.3372 -0.4960 6 7 0.6375 2.2474 -1.4390 7 14 2.0336 4.0106 0.1777 8 1 1.2520 5.0677 -0.5128 9 1 3.4829 4.2361 -0.0540 10 1 1.7520 4.0582 1.6349 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1671 0.0010 13 6 1.3854 -2.4722 0.0005 14 1 0.6932 -2.4924 0.8423 15 6 0.6024 -2.6097 -1.3078 16 6 -0.1122 -3.9645 -1.3262 17 6 0.9242 -5.0785 -1.1492 18 6 1.6948 -4.8456 0.1530 19 8 2.3095 -3.5560 0.1172 20 1 -0.3633 -0.0556 -1.0262 21 1 -0.3634 -0.8609 0.5611 22 1 -0.3634 0.9164 0.4650 23 1 0.4507 1.3903 -1.8529 24 1 -0.1336 -1.8087 -1.3778 25 1 1.2894 -2.5478 -2.1517 26 1 -0.8352 -4.0064 -0.5117 27 1 -0.6275 -4.0920 -2.2782 28 1 0.4184 -6.0430 -1.1057 29 1 1.6179 -5.0675 -1.9899 30 1 1.0067 -4.8970 0.9967 31 1 2.4626 -5.6115 0.2629 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050963407.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:50 Heat of formation + Delta-G solvation = -103.498086 kcal Electronic energy + Delta-G solvation = -14956.121898 eV Core-core repulsion = 12429.769202 eV Total energy + Delta-G solvation = -2526.352696 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.25701 -39.39142 -37.01222 -34.70400 -33.77923 -32.11691 -28.42511 -27.27215 -25.47531 -24.67249 -21.60581 -21.08181 -19.49901 -18.15256 -17.41538 -16.73743 -16.58114 -15.97584 -15.58720 -15.49833 -15.10099 -14.76608 -14.03488 -13.82377 -13.61556 -13.31525 -13.13307 -12.64949 -12.47067 -12.11284 -12.03011 -11.92328 -11.89351 -11.36190 -10.96610 -10.52692 -10.23394 -9.94331 -8.82914 -6.09271 1.47704 1.54377 1.83182 1.88897 2.20350 2.56704 2.92314 3.25981 3.65876 3.77783 3.84513 3.99165 4.01982 4.18515 4.33762 4.41535 4.56119 4.63711 4.71733 4.84917 4.86111 5.02395 5.05351 5.13609 5.33430 5.70103 5.85299 6.18869 6.58150 6.84225 7.31379 7.83656 8.42203 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.059996 B = 0.008562 C = 0.007850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.589143 B = 3269.309324 C = 3566.050203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.462 5.462 3 C -0.440 4.440 4 H 0.055 0.945 5 C -0.017 4.017 6 N -0.880 5.880 7 Si 1.121 2.879 8 H -0.270 1.270 9 H -0.280 1.280 10 H -0.266 1.266 11 C 0.435 3.565 12 O -0.624 6.624 13 C 0.095 3.905 14 H 0.092 0.908 15 C -0.147 4.147 16 C -0.112 4.112 17 C -0.153 4.153 18 C 0.046 3.954 19 O -0.395 6.395 20 H 0.054 0.946 21 H 0.087 0.913 22 H 0.061 0.939 23 H 0.267 0.733 24 H 0.087 0.913 25 H 0.045 0.955 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.108 0.892 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.859 -10.940 1.752 13.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.183 5.183 3 C -0.567 4.567 4 H 0.073 0.927 5 C -0.221 4.221 6 N -0.514 5.514 7 Si 0.941 3.059 8 H -0.194 1.194 9 H -0.206 1.206 10 H -0.191 1.191 11 C 0.225 3.775 12 O -0.511 6.511 13 C 0.034 3.966 14 H 0.110 0.890 15 C -0.185 4.185 16 C -0.150 4.150 17 C -0.190 4.190 18 C -0.030 4.030 19 O -0.315 6.315 20 H 0.073 0.927 21 H 0.105 0.895 22 H 0.080 0.920 23 H 0.078 0.922 24 H 0.106 0.894 25 H 0.064 0.936 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.126 0.874 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.466 -9.303 1.667 12.045 hybrid contribution 0.567 -1.562 -0.177 1.671 sum -6.899 -10.866 1.490 12.957 Atomic orbital electron populations 1.21928 0.79801 1.02706 1.01283 1.43778 1.06304 1.04458 1.63738 1.20348 1.02556 0.87406 1.46394 0.92665 1.27738 0.95046 1.06115 0.93208 1.70885 1.33408 1.28536 1.18524 0.82859 0.76321 0.70199 0.76536 1.19405 1.20569 1.19133 1.20891 0.87969 0.86073 0.82602 1.90477 1.16612 1.87814 1.56176 1.21710 0.90281 0.85014 0.99560 0.89025 1.22237 0.99522 1.01251 0.95484 1.21615 0.97608 0.91511 1.04235 1.22205 0.98516 1.00453 0.97856 1.22980 0.98552 0.83507 0.97932 1.88031 1.33866 1.14977 1.94583 0.92729 0.89491 0.92023 0.92201 0.89437 0.93605 0.89487 0.89358 0.87390 0.92435 0.91350 0.87526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.56 7.19 127.77 0.92 4.48 16 2 N -0.46 -24.56 2.88 -658.89 -1.90 -26.46 16 3 C -0.44 -26.20 9.06 84.04 0.76 -25.44 16 4 H 0.06 3.62 7.56 -2.91 -0.02 3.59 16 5 C -0.02 -0.93 4.63 84.93 0.39 -0.54 16 6 N -0.88 -48.64 12.72 21.66 0.28 -48.37 16 7 Si 1.12 48.16 30.01 68.60 2.06 50.21 16 8 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 9 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 10 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 11 C 0.43 23.29 7.05 87.65 0.62 23.91 16 12 O -0.62 -40.18 16.22 15.90 0.26 -39.92 16 13 C 0.10 3.75 2.25 29.88 0.07 3.82 16 14 H 0.09 3.07 7.14 -2.39 -0.02 3.05 16 15 C -0.15 -4.77 5.15 30.69 0.16 -4.61 16 16 C -0.11 -2.45 6.03 30.71 0.19 -2.26 16 17 C -0.15 -3.22 6.14 30.68 0.19 -3.03 16 18 C 0.05 1.18 6.84 72.01 0.49 1.67 16 19 O -0.40 -15.85 9.94 -129.99 -1.29 -17.14 16 20 H 0.05 2.20 5.60 -2.39 -0.01 2.19 16 21 H 0.09 2.83 6.28 -2.39 -0.01 2.82 16 22 H 0.06 2.69 7.29 -2.39 -0.02 2.67 16 23 H 0.27 14.83 6.40 -92.71 -0.59 14.23 16 24 H 0.09 2.74 5.12 -2.39 -0.01 2.73 16 25 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 28 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -76.85 249.82 4.48 -72.38 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 1.29 Total: 11.29 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 3.78 Total: -1.99 kcal Atomic # 7 Polarization: -73.20 SS G_CDS: -1.62 Total: -74.83 kcal Atomic # 8 Polarization: -56.03 SS G_CDS: -1.03 Total: -57.06 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 2.06 Total: 50.21 kcal Total: -76.85 4.48 -72.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050963407.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.122 kcal (2) G-P(sol) polarization free energy of solvation -76.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds