Wall clock time and date at job start Sun Mar 29 2020 22:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 120.00237 * 2 1 4 4 H 1.48500 * 109.46979 * 240.00118 * 3 2 1 5 5 H 1.48489 * 109.46875 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46879 * 120.00440 * 3 2 1 7 7 C 1.37876 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00750 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00020 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47569 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47437 * 180.02562 * 10 9 7 12 12 N 1.46903 * 109.47371 * 180.02562 * 11 10 9 13 13 C 1.47897 * 110.99875 * 69.87095 * 12 11 10 14 14 C 1.53996 * 107.05759 * 145.84783 * 13 12 11 15 15 C 1.54601 * 105.13655 * 358.77398 * 14 13 12 16 16 H 1.08998 * 110.72202 * 96.58268 * 15 14 13 17 17 C 1.52999 * 110.72539 * 219.68607 * 15 14 13 18 18 O 1.42903 * 109.47256 * 291.15201 * 17 15 14 19 19 C 1.48725 * 111.04454 * 187.45217 * 12 11 10 20 20 H 0.97001 * 119.99532 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.46832 * 60.00434 * 9 7 2 22 22 H 1.09004 * 109.47228 * 300.00674 * 9 7 2 23 23 H 1.09002 * 109.46895 * 60.00221 * 10 9 7 24 24 H 1.09004 * 109.47189 * 300.00445 * 10 9 7 25 25 H 1.09002 * 109.47038 * 60.00136 * 11 10 9 26 26 H 1.09004 * 109.47154 * 300.00295 * 11 10 9 27 27 H 1.09001 * 109.92152 * 26.49400 * 13 12 11 28 28 H 1.08998 * 109.91874 * 265.19746 * 13 12 11 29 29 H 1.09001 * 110.31128 * 239.86365 * 14 13 12 30 30 H 1.08994 * 110.39874 * 117.73275 * 14 13 12 31 31 H 1.08997 * 109.47286 * 171.14761 * 17 15 14 32 32 H 1.09008 * 109.47201 * 51.14542 * 17 15 14 33 33 H 0.96700 * 114.00311 * 180.02562 * 18 17 15 34 34 H 1.09005 * 110.84147 * 81.95788 * 19 12 11 35 35 H 1.09000 * 110.58399 * 318.76674 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 7 2.4347 -6.1037 -0.0006 13 6 3.1393 -6.1979 1.2964 14 6 3.3896 -7.6931 1.5669 15 6 2.7580 -8.4321 0.3648 16 1 3.5133 -8.6616 -0.3869 17 6 2.0498 -9.7079 0.8249 18 8 3.0206 -10.6586 1.2672 19 6 1.7357 -7.4040 -0.1812 20 1 -0.4849 0.8401 0.0004 21 1 0.6241 -2.5567 -0.8904 22 1 0.6246 -2.5571 0.8896 23 1 2.8717 -3.6044 0.8895 24 1 2.8719 -3.6044 -0.8905 25 1 0.8538 -5.0446 -0.8914 26 1 0.8531 -5.0451 0.8886 27 1 2.5192 -5.7762 2.0874 28 1 4.0893 -5.6663 1.2423 29 1 2.9043 -7.9962 2.4947 30 1 4.4593 -7.8964 1.6164 31 1 1.4820 -10.1279 -0.0054 32 1 1.3725 -9.4717 1.6456 33 1 2.6420 -11.4940 1.5737 34 1 1.5286 -7.5898 -1.2351 35 1 0.8157 -7.4289 0.4029 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051887432.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:17 Heat of formation + Delta-G solvation = -67.629185 kcal Electronic energy + Delta-G solvation = -14092.985802 eV Core-core repulsion = 11704.021593 eV Total energy + Delta-G solvation = -2388.964209 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.15280 -36.81660 -34.29910 -32.53145 -30.42321 -29.32841 -26.55823 -24.59137 -22.90262 -20.91575 -20.56615 -19.37812 -17.52780 -16.31277 -16.28168 -15.31803 -14.64212 -14.40659 -14.15363 -13.74877 -13.24237 -13.01384 -12.35337 -12.10902 -11.85279 -11.41441 -11.22329 -11.16020 -10.95883 -10.73049 -10.56621 -10.50280 -10.39555 -10.15462 -9.59917 -9.28803 -9.03234 -8.30783 -8.14233 -5.96275 -3.98173 3.36395 3.40142 3.43257 3.87454 4.26627 4.49681 4.67019 4.79845 4.93393 5.22614 5.25665 5.37396 5.39442 5.42901 5.64910 5.72138 5.80312 5.88325 5.92529 6.12869 6.17794 6.30465 6.35530 6.72557 6.81810 7.10581 7.25218 7.37818 7.41891 7.72177 7.87477 8.04368 8.48090 9.08817 9.65585 11.15235 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.088373 B = 0.004638 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 316.763970 B = 6035.743977 C = 6208.450558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.103 4.103 11 C 0.048 3.952 12 N -0.518 5.518 13 C 0.035 3.965 14 C -0.119 4.119 15 C -0.093 4.093 16 H 0.088 0.912 17 C 0.084 3.916 18 O -0.572 6.572 19 C 0.041 3.959 20 H 0.260 0.740 21 H 0.015 0.985 22 H 0.013 0.987 23 H 0.046 0.954 24 H 0.055 0.945 25 H 0.069 0.931 26 H 0.030 0.970 27 H 0.046 0.954 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.377 0.623 34 H 0.082 0.918 35 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.827 -18.401 2.343 18.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.141 4.141 11 C -0.080 4.080 12 N -0.242 5.242 13 C -0.093 4.093 14 C -0.157 4.157 15 C -0.112 4.112 16 H 0.107 0.893 17 C 0.006 3.994 18 O -0.378 6.378 19 C -0.087 4.087 20 H 0.070 0.930 21 H 0.034 0.966 22 H 0.031 0.969 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.048 0.952 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.223 0.777 34 H 0.100 0.900 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.438 -17.671 1.752 18.088 hybrid contribution -0.659 0.434 0.830 1.145 sum 2.779 -17.237 2.582 17.649 Atomic orbital electron populations 1.69958 1.06066 1.26630 1.51056 1.25027 0.94846 0.99236 0.95395 0.86653 0.79572 0.83115 0.78637 1.20205 1.21326 1.20272 1.21227 0.93038 0.91062 1.50341 0.92718 1.19078 0.94048 0.91446 0.97035 1.21604 0.99103 0.92589 1.00820 1.22471 0.93790 0.91456 1.00234 1.64800 1.26320 1.02143 1.30891 1.22892 0.99889 0.95795 0.90718 1.22403 1.01504 0.94375 0.97428 1.22059 0.98228 0.92578 0.98315 0.89321 1.22200 0.90327 0.89306 0.97540 1.86498 1.36383 1.28535 1.86335 1.23184 0.95109 0.89388 1.01013 0.93011 0.96614 0.96885 0.93556 0.92605 0.91218 0.95156 0.93603 0.90276 0.91791 0.91053 0.93533 0.93666 0.77667 0.89977 0.93860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.10 -2.24 5.21 -26.74 -0.14 -2.38 16 11 C 0.05 0.87 4.77 -3.82 -0.02 0.85 16 12 N -0.52 -8.24 5.26 -230.28 -1.21 -9.45 16 13 C 0.04 0.51 5.79 -2.76 -0.02 0.50 16 14 C -0.12 -1.46 6.41 -25.37 -0.16 -1.62 16 15 C -0.09 -1.07 3.32 -88.76 -0.29 -1.37 16 16 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 17 C 0.08 0.79 6.38 37.16 0.24 1.02 16 18 O -0.57 -5.46 13.55 -35.23 -0.48 -5.94 16 19 C 0.04 0.53 6.01 -1.79 -0.01 0.52 16 20 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 21 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 22 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.05 0.99 7.52 -51.93 -0.39 0.60 16 24 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.07 1.25 8.11 -51.93 -0.42 0.83 16 26 H 0.03 0.55 7.81 -51.93 -0.41 0.14 16 27 H 0.05 0.69 7.57 -51.93 -0.39 0.30 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.06 0.74 7.76 -51.93 -0.40 0.33 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.39 8.02 -51.92 -0.42 -0.02 16 33 H 0.38 1.78 9.12 45.56 0.42 2.20 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.04 0.53 7.93 -51.93 -0.41 0.12 16 LS Contribution 285.41 15.07 4.30 4.30 Total: -1.00 -31.97 285.41 -7.98 -39.95 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -5.35 Total: -3.28 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -0.95 Total: -15.91 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: -0.47 Total: -36.17 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.48 Total: -5.94 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.97 -7.98 -39.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051887432.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.682 kcal (2) G-P(sol) polarization free energy of solvation -31.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds