Wall clock time and date at job start Sun Mar 29 2020 22:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 120.00237 * 2 1 4 4 H 1.48500 * 109.46979 * 240.00118 * 3 2 1 5 5 H 1.48489 * 109.46875 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46879 * 120.00440 * 3 2 1 7 7 C 1.37876 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00750 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00020 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47569 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47437 * 180.02562 * 10 9 7 12 12 N 1.46903 * 109.47371 * 180.02562 * 11 10 9 13 13 C 1.47897 * 110.99875 * 69.87095 * 12 11 10 14 14 C 1.53996 * 107.05759 * 145.84783 * 13 12 11 15 15 C 1.54601 * 105.13655 * 358.77398 * 14 13 12 16 16 H 1.08998 * 110.72202 * 96.58268 * 15 14 13 17 17 C 1.52999 * 110.72539 * 219.68607 * 15 14 13 18 18 O 1.42903 * 109.47256 * 291.15201 * 17 15 14 19 19 C 1.48725 * 111.04454 * 187.45217 * 12 11 10 20 20 H 0.97001 * 119.99532 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.46832 * 60.00434 * 9 7 2 22 22 H 1.09004 * 109.47228 * 300.00674 * 9 7 2 23 23 H 1.09002 * 109.46895 * 60.00221 * 10 9 7 24 24 H 1.09004 * 109.47189 * 300.00445 * 10 9 7 25 25 H 1.09002 * 109.47038 * 60.00136 * 11 10 9 26 26 H 1.09004 * 109.47154 * 300.00295 * 11 10 9 27 27 H 1.09001 * 109.92152 * 26.49400 * 13 12 11 28 28 H 1.08998 * 109.91874 * 265.19746 * 13 12 11 29 29 H 1.09001 * 110.31128 * 239.86365 * 14 13 12 30 30 H 1.08994 * 110.39874 * 117.73275 * 14 13 12 31 31 H 1.08997 * 109.47286 * 171.14761 * 17 15 14 32 32 H 1.09008 * 109.47201 * 51.14542 * 17 15 14 33 33 H 0.96700 * 114.00311 * 180.02562 * 18 17 15 34 34 H 1.09005 * 110.84147 * 81.95788 * 19 12 11 35 35 H 1.09000 * 110.58399 * 318.76674 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 7 2.4347 -6.1037 -0.0006 13 6 3.1393 -6.1979 1.2964 14 6 3.3896 -7.6931 1.5669 15 6 2.7580 -8.4321 0.3648 16 1 3.5133 -8.6616 -0.3869 17 6 2.0498 -9.7079 0.8249 18 8 3.0206 -10.6586 1.2672 19 6 1.7357 -7.4040 -0.1812 20 1 -0.4849 0.8401 0.0004 21 1 0.6241 -2.5567 -0.8904 22 1 0.6246 -2.5571 0.8896 23 1 2.8717 -3.6044 0.8895 24 1 2.8719 -3.6044 -0.8905 25 1 0.8538 -5.0446 -0.8914 26 1 0.8531 -5.0451 0.8886 27 1 2.5192 -5.7762 2.0874 28 1 4.0893 -5.6663 1.2423 29 1 2.9043 -7.9962 2.4947 30 1 4.4593 -7.8964 1.6164 31 1 1.4820 -10.1279 -0.0054 32 1 1.3725 -9.4717 1.6456 33 1 2.6420 -11.4940 1.5737 34 1 1.5286 -7.5898 -1.2351 35 1 0.8157 -7.4289 0.4029 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051887432.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:17 Heat of formation + Delta-G solvation = -91.354337 kcal Electronic energy + Delta-G solvation = -14094.014602 eV Core-core repulsion = 11704.021593 eV Total energy + Delta-G solvation = -2389.993009 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.23908 -37.66006 -36.06486 -34.30801 -32.02091 -30.39017 -28.28706 -25.81166 -24.47365 -22.49038 -21.76093 -20.68716 -18.48032 -18.22641 -17.30185 -16.72458 -16.31185 -15.87746 -15.32126 -14.84391 -14.49554 -14.29095 -14.15460 -13.60895 -13.32065 -12.89493 -12.82431 -12.52911 -12.35920 -12.23337 -12.09061 -11.94046 -11.51743 -11.40821 -11.35285 -11.09978 -10.83499 -10.55397 -9.39463 -8.20652 -6.31887 1.39630 1.43100 1.51104 2.40774 2.93639 3.12236 3.31106 3.70365 3.82333 4.04487 4.20956 4.29694 4.31039 4.50356 4.55703 4.58031 4.68280 4.71635 4.76258 4.89770 4.96524 5.03764 5.08294 5.14193 5.24698 5.33302 5.50840 5.72156 5.84544 5.97903 6.05418 6.26973 6.84239 6.93850 7.37259 8.91158 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.088373 B = 0.004638 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 316.763970 B = 6035.743977 C = 6208.450558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.026 3.974 10 C -0.088 4.088 11 C 0.060 3.940 12 N -0.531 5.531 13 C 0.032 3.968 14 C -0.113 4.113 15 C -0.089 4.089 16 H 0.081 0.919 17 C 0.089 3.911 18 O -0.591 6.591 19 C 0.041 3.959 20 H 0.264 0.736 21 H -0.007 1.007 22 H -0.009 1.009 23 H 0.045 0.955 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.029 0.971 27 H 0.038 0.962 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.398 0.602 34 H 0.091 0.909 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.503 -19.193 2.511 19.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.126 4.126 11 C -0.068 4.068 12 N -0.255 5.255 13 C -0.096 4.096 14 C -0.151 4.151 15 C -0.108 4.108 16 H 0.099 0.901 17 C 0.011 3.989 18 O -0.399 6.399 19 C -0.087 4.087 20 H 0.073 0.927 21 H 0.012 0.988 22 H 0.009 0.991 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.248 0.752 34 H 0.109 0.891 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.118 -18.500 1.926 19.051 hybrid contribution -0.880 0.634 0.780 1.336 sum 3.238 -17.866 2.706 18.358 Atomic orbital electron populations 1.70088 1.07785 1.27882 1.51598 1.25989 0.95807 1.03371 0.94617 0.85489 0.78293 0.77998 0.79206 1.19171 1.20612 1.19187 1.21662 0.93485 0.92468 1.50746 0.92423 1.18974 0.94377 0.93033 0.94791 1.21348 0.97963 0.92873 1.00433 1.22186 0.93605 0.90755 1.00224 1.64723 1.26173 1.02850 1.31716 1.22923 0.99153 0.97605 0.89937 1.22359 1.01906 0.92550 0.98249 1.22015 0.97736 0.93415 0.97669 0.90081 1.22111 0.89969 0.88369 0.98453 1.86435 1.37169 1.29800 1.86543 1.23256 0.95546 0.87945 1.01904 0.92703 0.98827 0.99104 0.93596 0.93143 0.91140 0.95320 0.94334 0.91095 0.90799 0.90812 0.91908 0.92834 0.75250 0.89099 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.79 13.29 21.45 0.28 -57.50 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.55 -32.17 9.11 25.60 0.23 -31.93 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 9 C 0.03 1.42 4.97 29.85 0.15 1.56 16 10 C -0.09 -3.87 5.21 30.59 0.16 -3.71 16 11 C 0.06 2.19 4.77 86.30 0.41 2.60 16 12 N -0.53 -16.45 5.26 -882.49 -4.64 -21.09 16 13 C 0.03 0.91 5.79 86.45 0.50 1.41 16 14 C -0.11 -2.57 6.41 31.48 0.20 -2.37 16 15 C -0.09 -1.89 3.32 -9.59 -0.03 -1.92 16 16 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 17 C 0.09 1.41 6.38 71.98 0.46 1.87 16 18 O -0.59 -9.70 13.55 -148.98 -2.02 -11.72 16 19 C 0.04 0.98 6.01 86.61 0.52 1.50 16 20 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 21 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 22 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 23 H 0.05 1.99 7.52 -2.39 -0.02 1.97 16 24 H 0.05 2.24 8.14 -2.38 -0.02 2.23 16 25 H 0.07 2.52 8.11 -2.39 -0.02 2.50 16 26 H 0.03 1.04 7.81 -2.38 -0.02 1.02 16 27 H 0.04 1.15 7.57 -2.39 -0.02 1.13 16 28 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.07 1.55 7.76 -2.39 -0.02 1.53 16 30 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.05 0.77 8.02 -2.38 -0.02 0.75 16 33 H 0.40 2.66 9.12 -74.06 -0.68 1.99 16 34 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 35 H 0.05 1.16 7.93 -2.39 -0.02 1.14 16 Total: -1.00 -67.94 285.41 -0.92 -68.85 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: 0.37 Total: 4.87 kcal Atomic # 6 Polarization: -33.60 SS G_CDS: 3.06 Total: -30.54 kcal Atomic # 7 Polarization: -74.24 SS G_CDS: -4.36 Total: -78.60 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: -2.02 Total: -11.72 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -67.94 -0.92 -68.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051887432.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.501 kcal (2) G-P(sol) polarization free energy of solvation -67.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds