Wall clock time and date at job start Sun Mar 29 2020 22:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00009 * 2 1 4 4 H 1.48498 * 109.47270 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47473 * 299.99733 * 3 2 1 6 6 H 1.48498 * 109.47118 * 59.99852 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99939 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00280 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46955 * 185.00642 * 9 7 2 11 11 C 1.46852 * 111.00124 * 59.32085 * 10 9 7 12 12 C 1.53036 * 109.52292 * 174.15692 * 11 10 9 13 13 C 1.53121 * 109.30643 * 59.15939 * 12 11 10 14 14 C 1.53121 * 109.16132 * 302.39965 * 13 12 11 15 15 H 1.08998 * 109.50031 * 297.64121 * 14 13 12 16 16 C 1.52998 * 109.50272 * 177.56057 * 14 13 12 17 17 C 1.52998 * 109.47410 * 65.08148 * 16 14 13 18 18 O 1.42897 * 109.47052 * 180.02562 * 17 16 14 19 19 C 1.46840 * 111.00063 * 295.10867 * 10 9 7 20 20 H 0.96999 * 120.00128 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47007 * 65.00751 * 9 7 2 22 22 H 1.09005 * 109.46718 * 305.00494 * 9 7 2 23 23 H 1.08999 * 109.46261 * 294.17743 * 11 10 9 24 24 H 1.08997 * 109.45961 * 54.13947 * 11 10 9 25 25 H 1.09000 * 109.50089 * 179.12128 * 12 11 10 26 26 H 1.09000 * 109.50246 * 299.19556 * 12 11 10 27 27 H 1.09001 * 109.55127 * 182.47908 * 13 12 11 28 28 H 1.09001 * 109.49435 * 62.29035 * 13 12 11 29 29 H 1.09000 * 109.46817 * 305.07804 * 16 14 13 30 30 H 1.09004 * 109.47072 * 185.08396 * 16 14 13 31 31 H 1.08999 * 109.46963 * 59.99736 * 17 16 14 32 32 H 1.09006 * 109.46994 * 299.99668 * 17 16 14 33 33 H 0.96705 * 113.99891 * 180.02562 * 18 17 16 34 34 H 1.09000 * 109.46356 * 65.82880 * 19 10 9 35 35 H 1.08999 * 109.46657 * 305.85598 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2011 -3.6131 0.1220 11 6 2.9827 -3.5054 1.3605 12 6 3.8542 -4.7525 1.5253 13 6 4.7889 -4.8800 0.3192 14 6 3.9515 -4.9407 -0.9613 15 1 3.3169 -5.8267 -0.9394 16 6 4.8796 -5.0070 -2.1759 17 6 5.6656 -6.3193 -2.1462 18 8 6.5328 -6.3808 -3.2803 19 6 3.0772 -3.6881 -1.0540 20 1 -0.4850 0.8400 -0.0004 21 1 0.6937 -2.5969 -0.9311 22 1 0.5585 -2.5188 0.8421 23 1 3.6188 -2.6215 1.3129 24 1 2.3061 -3.4202 2.2108 25 1 4.4458 -4.6652 2.4366 26 1 3.2180 -5.6354 1.5877 27 1 5.3806 -5.7908 0.4110 28 1 5.4522 -4.0159 0.2801 29 1 5.5737 -4.1670 -2.1489 30 1 4.2866 -4.9591 -3.0893 31 1 4.9714 -7.1592 -2.1731 32 1 6.2586 -6.3671 -1.2328 33 1 7.0631 -7.1882 -3.3266 34 1 3.7129 -2.8034 -1.0904 35 1 2.4692 -3.7357 -1.9574 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051916370.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:29 Heat of formation + Delta-G solvation = -71.985713 kcal Electronic energy + Delta-G solvation = -14741.054641 eV Core-core repulsion = 12351.901519 eV Total energy + Delta-G solvation = -2389.153122 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.70227 -36.86194 -34.19677 -32.39402 -31.31735 -28.08931 -26.60393 -24.11636 -22.84830 -21.73400 -20.16978 -19.13865 -17.35363 -16.36011 -15.33457 -15.02622 -14.50724 -14.26985 -13.78083 -13.55094 -13.15753 -12.97578 -12.44395 -11.77986 -11.64428 -11.35523 -11.26198 -11.04115 -10.90893 -10.46223 -10.37756 -10.31932 -10.08643 -9.90555 -9.73993 -9.71156 -9.33863 -8.42285 -7.12659 -6.01226 -4.10518 3.26849 3.34985 3.38594 4.18696 4.41519 4.98497 5.04218 5.18134 5.28642 5.32164 5.39582 5.48301 5.55035 5.82744 5.99179 6.02105 6.08132 6.20534 6.29663 6.31322 6.41593 6.53097 6.59645 6.77945 6.82480 6.96298 7.32871 7.54503 7.56601 7.91605 8.10724 8.32254 8.36073 9.00620 9.56368 11.03554 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.036393 B = 0.007340 C = 0.006817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.197388 B = 3813.603429 C = 4106.326946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.064 3.936 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.548 4.548 8 H 0.057 0.943 9 C 0.186 3.814 10 N -0.542 5.542 11 C 0.064 3.936 12 C -0.117 4.117 13 C -0.114 4.114 14 C -0.083 4.083 15 H 0.073 0.927 16 C -0.114 4.114 17 C 0.076 3.924 18 O -0.578 6.578 19 C 0.071 3.929 20 H 0.261 0.739 21 H 0.027 0.973 22 H 0.034 0.966 23 H 0.037 0.963 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.043 0.957 32 H 0.046 0.954 33 H 0.375 0.625 34 H 0.037 0.963 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.857 -11.327 -0.886 15.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.587 4.587 8 H 0.075 0.925 9 C 0.061 3.939 10 N -0.266 5.266 11 C -0.065 4.065 12 C -0.155 4.155 13 C -0.151 4.151 14 C -0.102 4.102 15 H 0.091 0.909 16 C -0.152 4.152 17 C -0.002 4.002 18 O -0.383 6.383 19 C -0.058 4.058 20 H 0.071 0.929 21 H 0.045 0.955 22 H 0.053 0.947 23 H 0.056 0.944 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.221 0.779 34 H 0.055 0.945 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.134 -11.050 -0.973 14.370 hybrid contribution 1.101 1.291 0.110 1.700 sum 10.235 -9.759 -0.862 14.168 Atomic orbital electron populations 1.69956 1.06001 1.26681 1.50374 1.24967 0.94763 0.99133 0.94970 0.86602 0.80132 0.84007 0.77670 1.19888 1.20922 1.20937 1.21805 0.93365 0.92142 1.51367 0.92495 1.19752 0.90917 0.85526 0.97748 1.62413 1.17267 1.46212 1.00721 1.21840 0.95676 0.95294 0.93670 1.21635 0.97601 0.99535 0.96772 1.21659 0.97619 1.00750 0.95102 1.21171 0.95898 1.00091 0.92993 0.90877 1.21534 0.98151 0.96385 0.99140 1.22302 0.92006 0.98336 0.87548 1.86500 1.58656 1.45408 1.47699 1.21841 0.94614 0.94854 0.94474 0.92884 0.95494 0.94748 0.94443 0.91846 0.92633 0.91942 0.92836 0.92427 0.91425 0.91254 0.93822 0.93588 0.77942 0.94517 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 2 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.55 -15.24 7.72 -34.44 -0.27 -15.51 16 8 H 0.06 1.58 5.86 -52.49 -0.31 1.27 16 9 C 0.19 4.88 5.12 -4.97 -0.03 4.85 16 10 N -0.54 -11.84 4.86 -236.11 -1.15 -12.99 16 11 C 0.06 1.27 5.03 -3.83 -0.02 1.25 16 12 C -0.12 -1.83 6.09 -26.65 -0.16 -1.99 16 13 C -0.11 -1.64 4.98 -26.61 -0.13 -1.78 16 14 C -0.08 -1.27 2.35 -90.54 -0.21 -1.48 16 15 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 16 C -0.11 -1.60 5.06 -26.73 -0.14 -1.73 16 17 C 0.08 0.88 6.80 37.16 0.25 1.13 16 18 O -0.58 -6.83 13.66 -35.23 -0.48 -7.31 16 19 C 0.07 1.39 4.40 -3.84 -0.02 1.38 16 20 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 21 H 0.03 0.75 8.08 -51.93 -0.42 0.33 16 22 H 0.03 0.97 8.14 -51.93 -0.42 0.54 16 23 H 0.04 0.81 6.73 -51.93 -0.35 0.46 16 24 H 0.06 1.28 8.12 -51.93 -0.42 0.86 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.05 0.65 6.70 -51.93 -0.35 0.30 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.49 6.63 -51.93 -0.34 0.14 16 33 H 0.37 2.51 9.12 45.56 0.42 2.93 16 34 H 0.04 0.79 6.86 -51.93 -0.36 0.44 16 35 H 0.06 1.27 8.08 -51.93 -0.42 0.85 16 LS Contribution 275.30 15.07 4.15 4.15 Total: -1.00 -30.54 275.30 -7.65 -38.19 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -5.07 Total: -0.78 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -0.81 Total: -12.16 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: -0.41 Total: -38.73 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -0.48 Total: -7.31 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.54 -7.65 -38.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051916370.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.797 kcal (2) G-P(sol) polarization free energy of solvation -30.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds