Wall clock time and date at job start Sun Mar 29 2020 22:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00009 * 2 1 4 4 H 1.48498 * 109.47270 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47473 * 299.99733 * 3 2 1 6 6 H 1.48498 * 109.47118 * 59.99852 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99939 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00280 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46955 * 185.00642 * 9 7 2 11 11 C 1.46852 * 111.00124 * 59.32085 * 10 9 7 12 12 C 1.53036 * 109.52292 * 174.15692 * 11 10 9 13 13 C 1.53121 * 109.30643 * 59.15939 * 12 11 10 14 14 C 1.53121 * 109.16132 * 302.39965 * 13 12 11 15 15 H 1.08998 * 109.50031 * 297.64121 * 14 13 12 16 16 C 1.52998 * 109.50272 * 177.56057 * 14 13 12 17 17 C 1.52998 * 109.47410 * 65.08148 * 16 14 13 18 18 O 1.42897 * 109.47052 * 180.02562 * 17 16 14 19 19 C 1.46840 * 111.00063 * 295.10867 * 10 9 7 20 20 H 0.96999 * 120.00128 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47007 * 65.00751 * 9 7 2 22 22 H 1.09005 * 109.46718 * 305.00494 * 9 7 2 23 23 H 1.08999 * 109.46261 * 294.17743 * 11 10 9 24 24 H 1.08997 * 109.45961 * 54.13947 * 11 10 9 25 25 H 1.09000 * 109.50089 * 179.12128 * 12 11 10 26 26 H 1.09000 * 109.50246 * 299.19556 * 12 11 10 27 27 H 1.09001 * 109.55127 * 182.47908 * 13 12 11 28 28 H 1.09001 * 109.49435 * 62.29035 * 13 12 11 29 29 H 1.09000 * 109.46817 * 305.07804 * 16 14 13 30 30 H 1.09004 * 109.47072 * 185.08396 * 16 14 13 31 31 H 1.08999 * 109.46963 * 59.99736 * 17 16 14 32 32 H 1.09006 * 109.46994 * 299.99668 * 17 16 14 33 33 H 0.96705 * 113.99891 * 180.02562 * 18 17 16 34 34 H 1.09000 * 109.46356 * 65.82880 * 19 10 9 35 35 H 1.08999 * 109.46657 * 305.85598 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2011 -3.6131 0.1220 11 6 2.9827 -3.5054 1.3605 12 6 3.8542 -4.7525 1.5253 13 6 4.7889 -4.8800 0.3192 14 6 3.9515 -4.9407 -0.9613 15 1 3.3169 -5.8267 -0.9394 16 6 4.8796 -5.0070 -2.1759 17 6 5.6656 -6.3193 -2.1462 18 8 6.5328 -6.3808 -3.2803 19 6 3.0772 -3.6881 -1.0540 20 1 -0.4850 0.8400 -0.0004 21 1 0.6937 -2.5969 -0.9311 22 1 0.5585 -2.5188 0.8421 23 1 3.6188 -2.6215 1.3129 24 1 2.3061 -3.4202 2.2108 25 1 4.4458 -4.6652 2.4366 26 1 3.2180 -5.6354 1.5877 27 1 5.3806 -5.7908 0.4110 28 1 5.4522 -4.0159 0.2801 29 1 5.5737 -4.1670 -2.1489 30 1 4.2866 -4.9591 -3.0893 31 1 4.9714 -7.1592 -2.1731 32 1 6.2586 -6.3671 -1.2328 33 1 7.0631 -7.1882 -3.3266 34 1 3.7129 -2.8034 -1.0904 35 1 2.4692 -3.7357 -1.9574 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051916370.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:29 Heat of formation + Delta-G solvation = -94.990541 kcal Electronic energy + Delta-G solvation = -14742.052205 eV Core-core repulsion = 12351.901519 eV Total energy + Delta-G solvation = -2390.150687 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.15972 -37.88273 -35.82592 -34.24218 -32.82072 -29.49180 -28.46450 -25.85818 -24.18148 -23.31361 -21.59439 -20.63079 -18.49796 -18.23860 -16.89267 -16.34300 -15.99747 -15.89222 -15.15098 -15.09861 -14.62362 -14.27991 -14.19058 -13.34292 -13.29824 -12.88884 -12.86524 -12.61720 -12.46256 -12.15621 -12.09324 -11.84266 -11.76769 -11.44818 -11.14491 -11.02250 -10.67760 -10.64046 -9.02958 -8.17871 -6.38592 1.33169 1.34150 1.46114 2.34357 3.05378 3.17550 3.60556 3.83373 3.99213 4.11839 4.28679 4.35957 4.51948 4.56017 4.65478 4.73254 4.77579 4.92436 4.99320 5.03228 5.07210 5.12572 5.20794 5.28223 5.31229 5.35970 5.41848 5.58217 5.71966 6.03862 6.25852 6.57147 6.83302 6.97234 7.33113 8.84242 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.036393 B = 0.007340 C = 0.006817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.197388 B = 3813.603429 C = 4106.326946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.958 3.042 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.557 4.557 8 H 0.054 0.946 9 C 0.198 3.802 10 N -0.541 5.541 11 C 0.062 3.938 12 C -0.108 4.108 13 C -0.111 4.111 14 C -0.070 4.070 15 H 0.083 0.917 16 C -0.112 4.112 17 C 0.081 3.919 18 O -0.599 6.599 19 C 0.072 3.928 20 H 0.266 0.734 21 H 0.001 0.999 22 H 0.007 0.993 23 H 0.014 0.986 24 H 0.052 0.948 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.397 0.603 34 H 0.012 0.988 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.922 -12.462 -0.559 17.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.189 4.189 3 Si 0.783 3.217 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.596 4.596 8 H 0.072 0.928 9 C 0.071 3.929 10 N -0.265 5.265 11 C -0.067 4.067 12 C -0.146 4.146 13 C -0.148 4.148 14 C -0.089 4.089 15 H 0.101 0.899 16 C -0.150 4.150 17 C 0.004 3.996 18 O -0.408 6.408 19 C -0.057 4.057 20 H 0.075 0.925 21 H 0.019 0.981 22 H 0.025 0.975 23 H 0.033 0.967 24 H 0.070 0.930 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.110 0.890 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.247 0.753 34 H 0.030 0.970 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 11.223 -12.217 -0.645 16.602 hybrid contribution 0.432 1.615 -0.014 1.672 sum 11.655 -10.601 -0.659 15.769 Atomic orbital electron populations 1.70072 1.07561 1.27877 1.51101 1.25838 0.95655 1.02907 0.94466 0.85503 0.78810 0.79341 0.78023 1.19353 1.20209 1.20037 1.21999 0.93265 0.93068 1.51235 0.92819 1.19421 0.91387 0.86974 0.95120 1.62372 1.17839 1.43765 1.02506 1.21930 0.95471 0.97145 0.92125 1.21591 0.97350 0.97073 0.98567 1.21674 0.97273 1.02317 0.93523 1.21043 0.95683 0.97572 0.94620 0.89914 1.21455 0.97806 0.97935 0.97821 1.22201 0.92340 0.96850 0.88236 1.86435 1.59145 1.47342 1.47829 1.21893 0.94255 0.96522 0.93028 0.92522 0.98103 0.97462 0.96719 0.92983 0.90072 0.90893 0.88993 0.93214 0.92647 0.92340 0.92295 0.91856 0.75296 0.96951 0.93169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.32 13.29 21.45 0.28 -56.03 16 2 C 0.01 0.62 5.46 84.65 0.46 1.08 16 3 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.56 -31.95 7.72 25.60 0.20 -31.75 16 8 H 0.05 3.06 5.86 -2.91 -0.02 3.05 16 9 C 0.20 10.86 5.12 85.56 0.44 11.30 16 10 N -0.54 -24.20 4.86 -900.93 -4.38 -28.57 16 11 C 0.06 2.46 5.03 86.32 0.43 2.89 16 12 C -0.11 -3.08 6.09 30.65 0.19 -2.89 16 13 C -0.11 -2.85 4.98 30.68 0.15 -2.70 16 14 C -0.07 -2.05 2.35 -10.74 -0.03 -2.07 16 15 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 16 C -0.11 -2.96 5.06 30.59 0.15 -2.80 16 17 C 0.08 1.60 6.80 71.98 0.49 2.09 16 18 O -0.60 -12.43 13.66 -148.98 -2.03 -14.47 16 19 C 0.07 2.87 4.40 86.33 0.38 3.25 16 20 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 21 H 0.00 0.05 8.08 -2.39 -0.02 0.03 16 22 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 23 H 0.01 0.64 6.73 -2.39 -0.02 0.63 16 24 H 0.05 2.14 8.12 -2.39 -0.02 2.12 16 25 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.09 1.76 6.70 -2.39 -0.02 1.74 16 28 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.05 1.58 8.14 -2.39 -0.02 1.57 16 30 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.04 6.63 -2.38 -0.02 1.03 16 33 H 0.40 4.02 9.12 -74.05 -0.68 3.35 16 34 H 0.01 0.55 6.86 -2.39 -0.02 0.53 16 35 H 0.05 2.09 8.08 -2.39 -0.02 2.07 16 Total: -1.00 -67.14 275.30 -0.85 -67.99 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: 0.38 Total: 5.74 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: 2.87 Total: -21.61 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -4.09 Total: -84.61 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: -2.03 Total: -14.47 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -67.14 -0.85 -67.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051916370.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.999 kcal (2) G-P(sol) polarization free energy of solvation -67.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds