Wall clock time and date at job start Sun Mar 29 2020 22:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00220 * 2 1 4 4 H 1.48503 * 109.47053 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47208 * 300.00079 * 3 2 1 6 6 H 1.48505 * 109.47085 * 60.00350 * 3 2 1 7 7 C 1.37878 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99988 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99908 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47031 * 180.02562 * 9 7 2 11 11 C 1.46843 * 110.99730 * 66.04945 * 10 9 7 12 12 C 1.53045 * 109.52103 * 185.83716 * 11 10 9 13 13 C 1.53119 * 109.27959 * 300.81656 * 12 11 10 14 14 C 1.53128 * 109.15563 * 57.65560 * 13 12 11 15 15 H 1.09000 * 109.50127 * 62.32591 * 14 13 12 16 16 C 1.53006 * 109.50004 * 182.40147 * 14 13 12 17 17 C 1.52999 * 109.46997 * 295.00270 * 16 14 13 18 18 O 1.42905 * 109.46728 * 180.02562 * 17 16 14 19 19 C 1.46849 * 110.99801 * 190.25786 * 10 9 7 20 20 H 0.97002 * 119.99551 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47361 * 60.00329 * 9 7 2 22 22 H 1.09000 * 109.47266 * 300.00340 * 9 7 2 23 23 H 1.09003 * 109.46600 * 65.82247 * 11 10 9 24 24 H 1.08999 * 109.45622 * 305.84706 * 11 10 9 25 25 H 1.09003 * 109.49760 * 180.87869 * 12 11 10 26 26 H 1.09000 * 109.50384 * 60.76518 * 12 11 10 27 27 H 1.09000 * 109.52599 * 297.75232 * 13 12 11 28 28 H 1.08997 * 109.57781 * 177.58734 * 13 12 11 29 29 H 1.09000 * 109.46866 * 175.00058 * 16 14 13 30 30 H 1.09001 * 109.46611 * 55.00175 * 16 14 13 31 31 H 1.09000 * 109.47486 * 60.00167 * 17 16 14 32 32 H 1.09001 * 109.47362 * 299.99445 * 17 16 14 33 33 H 0.96696 * 114.00036 * 179.97438 * 18 17 16 34 34 H 1.08998 * 109.46617 * 54.14509 * 19 10 9 35 35 H 1.09001 * 109.46312 * 294.17463 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2055 -3.6157 -0.0005 11 6 2.9704 -3.6540 1.2523 12 6 4.0506 -4.7342 1.1592 13 6 3.3884 -6.0906 0.9021 14 6 2.5589 -6.0094 -0.3825 15 1 3.2150 -5.7957 -1.2263 16 6 1.8455 -7.3428 -0.6150 17 6 2.8825 -8.4381 -0.8717 18 8 2.2161 -9.6833 -1.0894 19 6 1.5220 -4.8923 -0.2447 20 1 -0.4849 0.8401 -0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6246 -2.5571 0.8896 23 1 2.2996 -3.8818 2.0807 24 1 3.4397 -2.6848 1.4210 25 1 4.6081 -4.7729 2.0951 26 1 4.7301 -4.4997 0.3398 27 1 2.7385 -6.3434 1.7399 28 1 4.1558 -6.8568 0.7923 29 1 1.1866 -7.2565 -1.4790 30 1 1.2574 -7.5986 0.2664 31 1 3.5414 -8.5244 -0.0076 32 1 3.4707 -8.1823 -1.7530 33 1 2.8134 -10.4246 -1.2593 34 1 0.9392 -4.8225 -1.1631 35 1 0.8579 -5.1143 0.5907 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051916372.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:32 Heat of formation + Delta-G solvation = -70.948201 kcal Electronic energy + Delta-G solvation = -14553.915745 eV Core-core repulsion = 12164.807613 eV Total energy + Delta-G solvation = -2389.108133 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.74276 -36.89443 -34.18682 -32.40777 -31.40686 -28.28910 -26.71931 -24.14425 -22.69105 -21.84567 -20.19592 -19.22277 -17.40894 -16.25703 -15.38772 -15.14555 -14.48612 -14.21396 -13.98073 -13.58561 -13.36830 -12.97137 -12.33692 -12.02854 -11.71142 -11.48926 -11.34530 -11.07288 -10.78820 -10.59489 -10.56150 -10.27189 -10.15720 -9.96627 -9.92001 -9.50995 -9.09746 -8.41907 -7.17529 -6.00793 -4.01965 3.32015 3.39269 3.44195 4.11900 4.44987 4.90104 4.97165 5.09197 5.26210 5.30971 5.35174 5.41220 5.49720 5.73647 5.89960 5.94288 6.00613 6.04867 6.19373 6.24297 6.29582 6.34016 6.51225 6.61462 6.79576 6.81101 7.34941 7.39190 7.51658 7.83697 8.13706 8.26215 8.59776 9.06310 9.62256 11.10229 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.060201 B = 0.006071 C = 0.005729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.997151 B = 4611.092733 C = 4886.505776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.505 4.505 8 H 0.064 0.936 9 C 0.192 3.808 10 N -0.537 5.537 11 C 0.064 3.936 12 C -0.118 4.118 13 C -0.114 4.114 14 C -0.081 4.081 15 H 0.077 0.923 16 C -0.114 4.114 17 C 0.075 3.925 18 O -0.578 6.578 19 C 0.063 3.937 20 H 0.260 0.740 21 H 0.030 0.970 22 H -0.010 1.010 23 H 0.017 0.983 24 H 0.082 0.918 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.375 0.625 34 H 0.067 0.933 35 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.719 -14.141 0.419 15.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.544 4.544 8 H 0.082 0.918 9 C 0.067 3.933 10 N -0.262 5.262 11 C -0.065 4.065 12 C -0.155 4.155 13 C -0.152 4.152 14 C -0.100 4.100 15 H 0.096 0.904 16 C -0.152 4.152 17 C -0.002 4.002 18 O -0.383 6.383 19 C -0.066 4.066 20 H 0.070 0.930 21 H 0.048 0.952 22 H 0.008 0.992 23 H 0.035 0.965 24 H 0.100 0.900 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.222 0.778 34 H 0.085 0.915 35 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 6.361 -13.542 0.134 14.962 hybrid contribution 0.254 0.507 0.577 0.809 sum 6.615 -13.036 0.711 14.635 Atomic orbital electron populations 1.69976 1.06078 1.26616 1.51240 1.24999 0.94856 0.99318 0.95515 0.86451 0.80078 0.83465 0.77484 1.19659 1.21017 1.21145 1.21211 0.93527 0.89941 1.49727 0.91806 1.19712 0.90096 0.87412 0.96041 1.62000 1.28045 1.02571 1.33547 1.21939 0.94961 0.98969 0.90586 1.21632 0.98333 0.94607 1.00977 1.21676 0.98701 0.97405 0.97396 1.21133 0.97421 0.92986 0.98451 0.90423 1.21539 0.97980 0.93052 1.02633 1.22295 0.94918 0.83880 0.99140 1.86488 1.38301 1.18893 1.94631 1.21992 0.94460 0.90103 1.00042 0.93011 0.95219 0.99244 0.96464 0.89960 0.92508 0.91512 0.92580 0.92641 0.91225 0.91522 0.93521 0.93706 0.77845 0.91464 0.96104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 7 C -0.51 -14.37 8.43 -34.44 -0.29 -14.66 16 8 H 0.06 1.80 7.14 -52.49 -0.37 1.42 16 9 C 0.19 5.13 4.72 -4.98 -0.02 5.11 16 10 N -0.54 -11.85 4.65 -236.11 -1.10 -12.95 16 11 C 0.06 1.27 5.30 -3.83 -0.02 1.25 16 12 C -0.12 -1.83 6.09 -26.65 -0.16 -1.99 16 13 C -0.11 -1.58 4.98 -26.60 -0.13 -1.71 16 14 C -0.08 -1.20 2.35 -90.53 -0.21 -1.41 16 15 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 16 C -0.11 -1.49 5.06 -26.73 -0.14 -1.63 16 17 C 0.08 0.83 6.80 37.16 0.25 1.08 16 18 O -0.58 -6.47 13.66 -35.23 -0.48 -6.95 16 19 C 0.06 1.17 4.74 -3.83 -0.02 1.15 16 20 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 21 H 0.03 0.84 7.98 -51.93 -0.41 0.43 16 22 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 23 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 24 H 0.08 1.77 6.71 -51.93 -0.35 1.42 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.65 6.69 -51.93 -0.35 0.30 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.47 6.62 -51.93 -0.34 0.12 16 32 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.38 2.32 9.12 45.56 0.42 2.74 16 34 H 0.07 1.26 8.01 -51.93 -0.42 0.85 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 278.37 15.07 4.20 4.20 Total: -1.00 -31.27 278.37 -7.70 -38.97 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -5.19 Total: -2.34 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -0.84 Total: -11.36 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: -0.36 Total: -39.28 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.48 Total: -6.95 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.27 -7.70 -38.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051916372.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.981 kcal (2) G-P(sol) polarization free energy of solvation -31.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds