Wall clock time and date at job start Sun Mar 29 2020 22:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00329 * 2 1 4 4 H 1.48495 * 109.47034 * 239.99938 * 3 2 1 5 5 H 1.48503 * 109.46907 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47241 * 119.99738 * 3 2 1 7 7 C 1.37879 * 119.99598 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99893 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00218 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47069 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47178 * 180.02562 * 10 9 7 12 12 C 1.46904 * 111.00210 * 175.71103 * 11 10 9 13 13 C 1.52995 * 110.01565 * 304.01691 * 12 11 10 14 14 O 1.42906 * 109.47419 * 305.47955 * 13 12 11 15 15 C 1.53876 * 110.03050 * 182.57570 * 12 11 10 16 16 C 1.54266 * 106.59604 * 240.71299 * 15 12 11 17 17 C 1.54890 * 104.19704 * 23.61542 * 16 15 12 18 18 C 1.54260 * 110.03026 * 65.40892 * 12 11 10 19 19 H 0.96999 * 120.00049 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46889 * 60.00209 * 9 7 2 21 21 H 1.09002 * 109.47106 * 300.00226 * 9 7 2 22 22 H 1.09002 * 109.47022 * 299.99886 * 10 9 7 23 23 H 1.08996 * 109.47780 * 59.99826 * 10 9 7 24 24 H 1.00903 * 110.99950 * 299.66631 * 11 10 9 25 25 H 1.09005 * 109.46955 * 65.47810 * 13 12 11 26 26 H 1.09001 * 109.47409 * 185.47777 * 13 12 11 27 27 H 0.96697 * 113.99814 * 180.02562 * 14 13 12 28 28 H 1.08997 * 110.03554 * 0.02562 * 15 12 11 29 29 H 1.09000 * 110.02884 * 121.43077 * 15 12 11 30 30 H 1.09001 * 110.49115 * 264.93223 * 16 15 12 31 31 H 1.09008 * 110.48354 * 142.28966 * 16 15 12 32 32 H 1.08997 * 110.75727 * 203.74287 * 17 16 15 33 33 H 1.08995 * 110.75766 * 80.36749 * 17 16 15 34 34 H 1.09002 * 110.48520 * 214.35294 * 18 12 11 35 35 H 1.08999 * 110.49135 * 336.99699 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 7 1.5106 -4.9343 0.0012 12 6 2.4318 -6.0741 -0.1002 13 6 3.3087 -5.9295 -1.3455 14 8 2.4781 -5.7617 -2.4962 15 6 1.6370 -7.3901 -0.1637 16 6 2.0653 -8.2232 1.0620 17 6 2.5857 -7.1715 2.0731 18 6 3.3153 -6.1533 1.1619 19 1 -0.4850 0.8400 -0.0004 20 1 0.6246 -2.5570 -0.8897 21 1 0.6239 -2.5567 0.8903 22 1 2.8725 -3.6048 -0.8877 23 1 2.8712 -3.6041 0.8922 24 1 0.9251 -5.0142 0.8191 25 1 3.9563 -5.0597 -1.2349 26 1 3.9195 -6.8243 -1.4657 27 1 2.9681 -5.6641 -3.3241 28 1 0.5678 -7.1831 -0.1198 29 1 1.8761 -7.9267 -1.0819 30 1 2.8601 -8.9186 0.7919 31 1 1.2115 -8.7601 1.4755 32 1 3.2810 -7.6254 2.7792 33 1 1.7566 -6.6961 2.5971 34 1 4.3119 -6.5144 0.9079 35 1 3.3738 -5.1797 1.6484 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053069989.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:15 Heat of formation + Delta-G solvation = -67.004370 kcal Electronic energy + Delta-G solvation = -14751.224486 eV Core-core repulsion = 12362.287370 eV Total energy + Delta-G solvation = -2388.937115 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.29195 -35.81448 -34.43001 -32.53133 -29.75460 -28.60147 -27.53531 -24.62645 -23.43080 -21.03793 -19.94340 -18.74719 -16.93752 -16.37130 -15.73530 -15.45453 -14.49119 -14.40187 -13.91043 -13.44655 -13.36989 -12.59785 -12.29642 -11.86476 -11.53222 -11.19416 -11.13590 -10.98772 -10.90804 -10.80384 -10.56064 -10.47319 -10.25752 -9.89189 -9.55059 -9.27349 -9.06543 -8.29176 -7.60590 -5.94179 -3.96575 3.35795 3.40083 3.42304 4.32134 4.49454 4.68469 4.79117 4.93152 5.11989 5.41300 5.41715 5.48446 5.54729 5.62206 5.72253 5.75518 5.91404 5.93596 6.02951 6.14672 6.22090 6.34783 6.43639 6.51122 6.64114 7.10899 7.63735 7.82684 7.90093 7.97945 8.10792 8.20277 8.50923 9.10951 9.66494 11.17294 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.043867 B = 0.006710 C = 0.006429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.142881 B = 4171.643288 C = 4353.964479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.521 4.521 8 H 0.052 0.948 9 C 0.028 3.972 10 C 0.065 3.935 11 N -0.665 5.665 12 C 0.115 3.885 13 C 0.092 3.908 14 O -0.549 6.549 15 C -0.108 4.108 16 C -0.127 4.127 17 C -0.122 4.122 18 C -0.158 4.158 19 H 0.260 0.740 20 H 0.025 0.975 21 H 0.011 0.989 22 H 0.059 0.941 23 H 0.013 0.987 24 H 0.333 0.667 25 H 0.044 0.956 26 H 0.038 0.962 27 H 0.367 0.633 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.609 -14.742 0.669 16.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.560 4.560 8 H 0.070 0.930 9 C -0.009 4.009 10 C -0.063 4.063 11 N -0.295 5.295 12 C 0.022 3.978 13 C 0.013 3.987 14 O -0.352 6.352 15 C -0.146 4.146 16 C -0.165 4.165 17 C -0.160 4.160 18 C -0.198 4.198 19 H 0.070 0.930 20 H 0.044 0.956 21 H 0.030 0.970 22 H 0.078 0.922 23 H 0.031 0.969 24 H 0.151 0.849 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.212 0.788 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.835 -14.640 0.433 15.766 hybrid contribution 1.400 1.052 0.523 1.828 sum 7.236 -13.587 0.955 15.423 Atomic orbital electron populations 1.69967 1.06009 1.26592 1.50680 1.24999 0.94823 0.99114 0.95413 0.86669 0.79577 0.83275 0.78516 1.20278 1.21266 1.20356 1.21154 0.92833 0.91161 1.50803 0.93003 1.19021 0.94032 0.90261 0.97627 1.22204 0.97122 0.88740 0.98263 1.60698 1.21960 1.01093 1.45747 1.21561 0.91834 0.92509 0.91859 1.22238 0.91938 0.98351 0.86133 1.86677 1.35929 1.96119 1.16434 1.22158 1.00897 0.94058 0.97451 1.22417 1.00329 0.97588 0.96129 1.22442 0.99773 0.96485 0.97273 1.23133 0.99230 1.00251 0.97139 0.92988 0.95617 0.97034 0.92233 0.96890 0.84885 0.93740 0.94418 0.78773 0.90708 0.91538 0.92076 0.91843 0.91867 0.91420 0.91704 0.90670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.59 13.29 55.43 0.74 -26.85 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.18 9.11 -34.44 -0.31 -15.50 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.03 0.76 5.27 -27.88 -0.15 0.61 16 10 C 0.06 1.42 4.95 -3.82 -0.02 1.40 16 11 N -0.66 -12.62 5.75 -98.83 -0.57 -13.19 16 12 C 0.11 1.75 0.62 -130.49 -0.08 1.67 16 13 C 0.09 1.35 4.89 37.16 0.18 1.53 16 14 O -0.55 -8.73 13.21 -35.23 -0.47 -9.19 16 15 C -0.11 -1.46 6.07 -25.61 -0.16 -1.61 16 16 C -0.13 -1.41 6.83 -25.07 -0.17 -1.58 16 17 C -0.12 -1.43 6.91 -24.74 -0.17 -1.60 16 18 C -0.16 -2.14 5.83 -25.07 -0.15 -2.28 16 19 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 20 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 22 H 0.06 1.33 6.16 -51.93 -0.32 1.01 16 23 H 0.01 0.28 6.39 -51.93 -0.33 -0.05 16 24 H 0.33 6.15 8.78 -39.29 -0.34 5.81 16 25 H 0.04 0.68 6.63 -51.93 -0.34 0.34 16 26 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.37 4.09 9.12 45.56 0.42 4.50 16 28 H 0.07 1.10 7.92 -51.93 -0.41 0.69 16 29 H 0.07 0.88 7.62 -51.93 -0.40 0.49 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.79 7.86 -51.93 -0.41 0.38 16 35 H 0.07 1.14 6.12 -51.93 -0.32 0.83 16 LS Contribution 278.67 15.07 4.20 4.20 Total: -1.00 -32.23 278.67 -7.20 -39.43 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -4.96 Total: 4.33 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -1.12 Total: -15.75 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.17 Total: -40.04 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -0.47 Total: -9.19 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.23 -7.20 -39.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053069989.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.577 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds