Wall clock time and date at job start Sun Mar 29 2020 22:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00329 * 2 1 4 4 H 1.48495 * 109.47034 * 239.99938 * 3 2 1 5 5 H 1.48503 * 109.46907 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47241 * 119.99738 * 3 2 1 7 7 C 1.37879 * 119.99598 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99893 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00218 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47069 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47178 * 180.02562 * 10 9 7 12 12 C 1.46904 * 111.00210 * 175.71103 * 11 10 9 13 13 C 1.52995 * 110.01565 * 304.01691 * 12 11 10 14 14 O 1.42906 * 109.47419 * 305.47955 * 13 12 11 15 15 C 1.53876 * 110.03050 * 182.57570 * 12 11 10 16 16 C 1.54266 * 106.59604 * 240.71299 * 15 12 11 17 17 C 1.54890 * 104.19704 * 23.61542 * 16 15 12 18 18 C 1.54260 * 110.03026 * 65.40892 * 12 11 10 19 19 H 0.96999 * 120.00049 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46889 * 60.00209 * 9 7 2 21 21 H 1.09002 * 109.47106 * 300.00226 * 9 7 2 22 22 H 1.09002 * 109.47022 * 299.99886 * 10 9 7 23 23 H 1.08996 * 109.47780 * 59.99826 * 10 9 7 24 24 H 1.00903 * 110.99950 * 299.66631 * 11 10 9 25 25 H 1.09005 * 109.46955 * 65.47810 * 13 12 11 26 26 H 1.09001 * 109.47409 * 185.47777 * 13 12 11 27 27 H 0.96697 * 113.99814 * 180.02562 * 14 13 12 28 28 H 1.08997 * 110.03554 * 0.02562 * 15 12 11 29 29 H 1.09000 * 110.02884 * 121.43077 * 15 12 11 30 30 H 1.09001 * 110.49115 * 264.93223 * 16 15 12 31 31 H 1.09008 * 110.48354 * 142.28966 * 16 15 12 32 32 H 1.08997 * 110.75727 * 203.74287 * 17 16 15 33 33 H 1.08995 * 110.75766 * 80.36749 * 17 16 15 34 34 H 1.09002 * 110.48520 * 214.35294 * 18 12 11 35 35 H 1.08999 * 110.49135 * 336.99699 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 7 1.5106 -4.9343 0.0012 12 6 2.4318 -6.0741 -0.1002 13 6 3.3087 -5.9295 -1.3455 14 8 2.4781 -5.7617 -2.4962 15 6 1.6370 -7.3901 -0.1637 16 6 2.0653 -8.2232 1.0620 17 6 2.5857 -7.1715 2.0731 18 6 3.3153 -6.1533 1.1619 19 1 -0.4850 0.8400 -0.0004 20 1 0.6246 -2.5570 -0.8897 21 1 0.6239 -2.5567 0.8903 22 1 2.8725 -3.6048 -0.8877 23 1 2.8712 -3.6041 0.8922 24 1 0.9251 -5.0142 0.8191 25 1 3.9563 -5.0597 -1.2349 26 1 3.9195 -6.8243 -1.4657 27 1 2.9681 -5.6641 -3.3241 28 1 0.5678 -7.1831 -0.1198 29 1 1.8761 -7.9267 -1.0819 30 1 2.8601 -8.9186 0.7919 31 1 1.2115 -8.7601 1.4755 32 1 3.2810 -7.6254 2.7792 33 1 1.7566 -6.6961 2.5971 34 1 4.3119 -6.5144 0.9079 35 1 3.3738 -5.1797 1.6484 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053069989.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:15 Heat of formation + Delta-G solvation = -91.423598 kcal Electronic energy + Delta-G solvation = -14752.283383 eV Core-core repulsion = 12362.287370 eV Total energy + Delta-G solvation = -2389.996012 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.48531 -36.96428 -36.19825 -34.48767 -31.43092 -29.65602 -29.08131 -26.32205 -24.90624 -22.64298 -21.24019 -20.01263 -18.48790 -18.10504 -17.10482 -16.72751 -16.40190 -15.73568 -15.27907 -14.74843 -14.66200 -14.26309 -14.06023 -13.29834 -13.13463 -12.88186 -12.63843 -12.50362 -12.22572 -12.09796 -11.93540 -11.74691 -11.44459 -11.42956 -11.32791 -11.16899 -10.73817 -10.55255 -9.11963 -8.20177 -6.32505 1.38882 1.42969 1.50945 2.40058 3.12616 3.17943 3.52176 3.73144 3.79195 4.14499 4.34148 4.38705 4.47478 4.52310 4.57568 4.58587 4.72896 4.81999 4.88691 4.96812 5.09157 5.11243 5.14656 5.23269 5.43298 5.44786 5.50106 5.69453 5.81236 6.18031 6.39837 6.59558 6.85105 7.02710 7.36719 8.92119 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.043867 B = 0.006710 C = 0.006429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.142881 B = 4171.643288 C = 4353.964479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.036 3.964 10 C 0.088 3.912 11 N -0.677 5.677 12 C 0.104 3.896 13 C 0.089 3.911 14 O -0.575 6.575 15 C -0.105 4.105 16 C -0.117 4.117 17 C -0.120 4.120 18 C -0.154 4.154 19 H 0.264 0.736 20 H -0.013 1.013 21 H -0.013 1.013 22 H 0.056 0.944 23 H 0.018 0.982 24 H 0.332 0.668 25 H 0.033 0.967 26 H 0.071 0.929 27 H 0.386 0.614 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.441 -15.545 0.958 17.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.002 4.002 10 C -0.041 4.041 11 N -0.307 5.307 12 C 0.013 3.987 13 C 0.011 3.989 14 O -0.382 6.382 15 C -0.143 4.143 16 C -0.155 4.155 17 C -0.157 4.157 18 C -0.194 4.194 19 H 0.073 0.927 20 H 0.006 0.994 21 H 0.005 0.995 22 H 0.074 0.926 23 H 0.036 0.964 24 H 0.150 0.850 25 H 0.052 0.948 26 H 0.089 0.911 27 H 0.234 0.766 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.687 -15.469 0.713 17.288 hybrid contribution 0.787 1.253 0.397 1.533 sum 8.474 -14.215 1.110 16.586 Atomic orbital electron populations 1.70118 1.07949 1.27885 1.51346 1.26023 0.95781 1.03502 0.94551 0.85446 0.78231 0.77779 0.79244 1.19101 1.20695 1.18987 1.21582 0.93443 0.92267 1.51073 0.92202 1.18869 0.94299 0.92510 0.94509 1.21753 0.95542 0.88493 0.98266 1.60614 1.22980 1.01209 1.45933 1.21829 0.91992 0.91592 0.93272 1.22344 0.91693 0.99380 0.85504 1.86622 1.37481 1.96259 1.17797 1.22124 0.99550 0.93526 0.99108 1.22384 1.01366 0.97252 0.94465 1.22452 0.99724 0.96133 0.97437 1.23073 1.00121 0.99875 0.96283 0.92726 0.99416 0.99503 0.92566 0.96364 0.84975 0.94839 0.91102 0.76640 0.92500 0.91049 0.90079 0.90720 0.89741 0.92454 0.89699 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.87 13.29 21.45 0.28 -58.59 16 2 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 3 Si 0.97 45.21 29.54 68.60 2.03 47.24 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.55 -32.34 9.11 25.60 0.23 -32.10 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.04 2.02 5.27 29.85 0.16 2.17 16 10 C 0.09 3.94 4.95 86.30 0.43 4.37 16 11 N -0.68 -26.15 5.75 -466.61 -2.68 -28.83 16 12 C 0.10 3.08 0.62 4.25 0.00 3.08 16 13 C 0.09 2.47 4.89 71.98 0.35 2.82 16 14 O -0.58 -17.86 13.21 -148.98 -1.97 -19.83 16 15 C -0.11 -2.68 6.07 31.32 0.19 -2.49 16 16 C -0.12 -2.25 6.83 31.67 0.22 -2.03 16 17 C -0.12 -2.51 6.91 31.89 0.22 -2.29 16 18 C -0.15 -3.89 5.83 31.67 0.18 -3.70 16 19 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 20 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 21 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 22 H 0.06 2.54 6.16 -2.39 -0.01 2.52 16 23 H 0.02 0.80 6.39 -2.39 -0.02 0.78 16 24 H 0.33 12.67 8.78 -89.69 -0.79 11.88 16 25 H 0.03 0.99 6.63 -2.38 -0.02 0.98 16 26 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.39 8.21 9.12 -74.06 -0.68 7.54 16 28 H 0.06 1.65 7.92 -2.39 -0.02 1.63 16 29 H 0.07 1.75 7.62 -2.39 -0.02 1.73 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.08 1.80 7.86 -2.39 -0.02 1.78 16 35 H 0.05 1.59 6.12 -2.39 -0.01 1.58 16 Total: -1.00 -70.16 278.67 -0.28 -70.44 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -0.39 Total: 19.33 kcal Atomic # 6 Polarization: -32.20 SS G_CDS: 2.45 Total: -29.75 kcal Atomic # 7 Polarization: -85.02 SS G_CDS: -2.40 Total: -87.42 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -1.97 Total: -19.83 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -70.16 -0.28 -70.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053069989.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.984 kcal (2) G-P(sol) polarization free energy of solvation -70.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds