Wall clock time and date at job start Sun Mar 29 2020 21:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.46564 * 2 1 4 4 C 1.54806 * 109.46641 * 240.00482 * 2 1 3 5 5 N 1.45125 * 109.53729 * 172.11367 * 4 2 1 6 6 C 1.34781 * 118.75968 * 269.31452 * 5 4 2 7 7 O 1.21680 * 120.00246 * 175.31822 * 6 5 4 8 8 C 1.46378 * 119.99574 * 355.31065 * 6 5 4 9 9 H 1.08000 * 119.99882 * 5.31835 * 8 6 5 10 10 C 1.40046 * 119.99801 * 185.31183 * 8 6 5 11 11 N 1.30672 * 120.00295 * 0.02562 * 10 8 6 12 12 Si 1.86802 * 119.99840 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47488 * 60.00087 * 12 10 8 14 14 H 1.48502 * 109.46890 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47104 * 299.99556 * 12 10 8 16 16 C 1.47511 * 122.48689 * 89.28719 * 5 4 2 17 17 C 1.53575 * 111.02235 * 318.37265 * 16 5 4 18 18 C 1.51530 * 109.56605 * 320.03020 * 17 16 5 19 19 O 1.38011 * 109.47178 * 119.99672 * 2 1 3 20 20 H 1.09001 * 109.47189 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47368 * 299.99803 * 1 2 3 22 22 H 1.09005 * 109.47217 * 59.99519 * 1 2 3 23 23 H 1.08993 * 109.46077 * 52.09694 * 4 2 1 24 24 H 1.08998 * 109.46301 * 292.12977 * 4 2 1 25 25 H 0.96996 * 120.00338 * 179.97438 * 11 10 8 26 26 H 1.08996 * 109.17091 * 197.97749 * 16 5 4 27 27 H 1.08999 * 109.12131 * 78.74028 * 16 5 4 28 28 H 1.09004 * 109.45273 * 80.05322 * 17 16 5 29 29 H 1.08997 * 109.44944 * 200.00319 * 17 16 5 30 30 H 1.09003 * 109.58949 * 211.17191 * 18 17 16 31 31 H 1.08999 * 109.58897 * 331.61224 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0459 -0.7297 -1.2641 5 7 3.4849 -0.5702 -1.3632 6 6 3.9751 0.4800 -2.0512 7 8 5.1744 0.6838 -2.0775 8 6 3.0647 1.3752 -2.7670 9 1 1.9965 1.2460 -2.6742 10 6 3.5789 2.3994 -3.5720 11 7 4.8713 2.5555 -3.6846 12 14 2.4170 3.5423 -4.4849 13 1 1.5530 4.2531 -3.5084 14 1 3.2055 4.5324 -5.2615 15 1 1.5690 2.7496 -5.4110 16 6 4.4315 -1.5137 -0.7389 17 6 3.9600 -1.9188 0.6654 18 6 3.3878 -0.7096 1.3771 19 8 1.9900 -0.6505 1.1269 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.5716 -0.3037 -2.1482 24 1 1.8019 -1.7898 -1.1965 25 1 5.2275 3.2646 -4.2424 26 1 5.4111 -1.0417 -0.6651 27 1 4.5097 -2.4052 -1.3612 28 1 3.1923 -2.6882 0.5827 29 1 4.8046 -2.3085 1.2335 30 1 3.5630 -0.7997 2.4492 31 1 3.8653 0.1954 1.0014 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061920739.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:41 Heat of formation + Delta-G solvation = -82.192308 kcal Electronic energy + Delta-G solvation = -15136.628505 eV Core-core repulsion = 12611.199697 eV Total energy + Delta-G solvation = -2525.428808 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.37264 -36.93956 -33.94984 -33.23530 -32.43743 -29.66302 -26.90176 -25.72913 -24.54699 -21.30927 -20.78582 -18.92918 -16.65259 -16.25043 -15.94098 -15.32844 -14.92380 -14.32788 -13.64702 -13.38117 -12.81808 -12.41974 -12.31187 -12.08666 -11.79978 -11.41689 -11.18873 -11.11930 -10.83802 -10.72320 -10.39637 -10.20910 -10.12817 -9.97830 -9.02816 -8.86704 -7.61842 -7.18864 -6.22473 -4.68049 3.12989 3.18312 3.19664 4.05714 4.14172 4.48866 4.54846 5.30038 5.37680 5.50909 5.61702 5.70265 5.83588 5.85034 5.95498 5.99471 6.15755 6.29079 6.32551 6.34541 6.47334 6.52696 6.66504 6.71728 7.41528 7.67960 8.03515 8.17875 8.31699 8.98909 9.39031 10.54143 10.72551 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.034215 B = 0.011626 C = 0.009336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.165754 B = 2407.875992 C = 2998.521426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.078 3.922 3 H 0.056 0.944 4 C 0.099 3.901 5 N -0.644 5.644 6 C 0.552 3.448 7 O -0.579 6.579 8 C -0.544 4.544 9 H 0.073 0.927 10 C 0.088 3.912 11 N -0.767 5.767 12 Si 0.905 3.095 13 H -0.267 1.267 14 H -0.280 1.280 15 H -0.267 1.267 16 C 0.118 3.882 17 C -0.162 4.162 18 C 0.080 3.920 19 O -0.395 6.395 20 H 0.057 0.943 21 H 0.056 0.944 22 H 0.071 0.929 23 H 0.090 0.910 24 H 0.054 0.946 25 H 0.269 0.731 26 H 0.082 0.918 27 H 0.040 0.960 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.769 -4.872 5.820 10.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.018 3.982 3 H 0.074 0.926 4 C -0.027 4.027 5 N -0.382 5.382 6 C 0.358 3.642 7 O -0.461 6.461 8 C -0.581 4.581 9 H 0.091 0.909 10 C -0.132 4.132 11 N -0.396 5.396 12 Si 0.730 3.270 13 H -0.192 1.192 14 H -0.205 1.205 15 H -0.192 1.192 16 C -0.006 4.006 17 C -0.201 4.201 18 C 0.004 3.996 19 O -0.314 6.314 20 H 0.076 0.924 21 H 0.076 0.924 22 H 0.090 0.910 23 H 0.108 0.892 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.100 0.900 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.042 -4.753 5.824 9.644 hybrid contribution -0.379 0.585 -0.675 0.971 sum -6.421 -4.167 5.149 9.225 Atomic orbital electron populations 1.21693 0.93537 1.02117 1.02119 1.22144 0.93943 0.96018 0.86133 0.92609 1.22062 0.83177 0.98959 0.98478 1.47931 1.04083 1.28766 1.57376 1.18340 0.88557 0.79159 0.78108 1.90579 1.16676 1.73809 1.65076 1.20977 0.93312 1.14371 1.29400 0.90932 1.25739 0.95043 0.96976 0.95460 1.70002 1.12325 1.27103 1.30176 0.86471 0.80723 0.80004 0.79834 1.19168 1.20541 1.19213 1.21359 0.95132 0.92660 0.91448 1.22463 1.01043 0.99189 0.97380 1.22047 0.81079 0.98016 0.98482 1.86106 1.23428 1.77419 1.44489 0.92371 0.92441 0.90992 0.89235 0.92766 0.92018 0.89968 0.94220 0.91328 0.90983 0.90342 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.55 37.16 0.35 -1.60 16 2 C 0.08 1.40 3.25 -25.78 -0.08 1.32 16 3 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 4 C 0.10 1.93 4.66 -3.83 -0.02 1.91 16 5 N -0.64 -14.89 2.19 -174.13 -0.38 -15.27 16 6 C 0.55 15.71 7.56 -12.98 -0.10 15.62 16 7 O -0.58 -18.71 14.33 5.21 0.07 -18.63 16 8 C -0.54 -15.09 8.68 -35.63 -0.31 -15.40 16 9 H 0.07 1.82 5.86 -52.49 -0.31 1.52 16 10 C 0.09 2.42 5.50 -17.37 -0.10 2.33 16 11 N -0.77 -22.88 11.84 55.55 0.66 -22.22 16 12 Si 0.91 19.88 29.56 -169.99 -5.02 14.86 16 13 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 14 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 15 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 16 C 0.12 2.38 6.18 -3.19 -0.02 2.36 16 17 C -0.16 -2.61 5.79 -27.18 -0.16 -2.77 16 18 C 0.08 1.37 6.37 36.41 0.23 1.60 16 19 O -0.40 -7.09 9.47 -26.52 -0.25 -7.34 16 20 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 21 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 23 H 0.09 1.79 5.76 -51.93 -0.30 1.49 16 24 H 0.05 0.96 8.11 -51.93 -0.42 0.54 16 25 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 26 H 0.08 1.84 6.95 -51.93 -0.36 1.48 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 1.06 8.01 -51.93 -0.42 0.65 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 1.16 7.40 -51.93 -0.38 0.78 16 LS Contribution 253.64 15.07 3.82 3.82 Total: -1.00 -33.11 253.64 -5.58 -38.69 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -4.28 Total: 0.73 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -0.19 Total: 5.36 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.28 Total: -37.49 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.18 Total: -25.97 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -33.11 -5.58 -38.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061920739.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.498 kcal (2) G-P(sol) polarization free energy of solvation -33.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds