Wall clock time and date at job start Sun Mar 29 2020 21:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.46564 * 2 1 4 4 C 1.54806 * 109.46641 * 240.00482 * 2 1 3 5 5 N 1.45125 * 109.53729 * 172.11367 * 4 2 1 6 6 C 1.34781 * 118.75968 * 269.31452 * 5 4 2 7 7 O 1.21680 * 120.00246 * 175.31822 * 6 5 4 8 8 C 1.46378 * 119.99574 * 355.31065 * 6 5 4 9 9 H 1.08000 * 119.99882 * 5.31835 * 8 6 5 10 10 C 1.40046 * 119.99801 * 185.31183 * 8 6 5 11 11 N 1.30672 * 120.00295 * 0.02562 * 10 8 6 12 12 Si 1.86802 * 119.99840 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47488 * 60.00087 * 12 10 8 14 14 H 1.48502 * 109.46890 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47104 * 299.99556 * 12 10 8 16 16 C 1.47511 * 122.48689 * 89.28719 * 5 4 2 17 17 C 1.53575 * 111.02235 * 318.37265 * 16 5 4 18 18 C 1.51530 * 109.56605 * 320.03020 * 17 16 5 19 19 O 1.38011 * 109.47178 * 119.99672 * 2 1 3 20 20 H 1.09001 * 109.47189 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47368 * 299.99803 * 1 2 3 22 22 H 1.09005 * 109.47217 * 59.99519 * 1 2 3 23 23 H 1.08993 * 109.46077 * 52.09694 * 4 2 1 24 24 H 1.08998 * 109.46301 * 292.12977 * 4 2 1 25 25 H 0.96996 * 120.00338 * 179.97438 * 11 10 8 26 26 H 1.08996 * 109.17091 * 197.97749 * 16 5 4 27 27 H 1.08999 * 109.12131 * 78.74028 * 16 5 4 28 28 H 1.09004 * 109.45273 * 80.05322 * 17 16 5 29 29 H 1.08997 * 109.44944 * 200.00319 * 17 16 5 30 30 H 1.09003 * 109.58949 * 211.17191 * 18 17 16 31 31 H 1.08999 * 109.58897 * 331.61224 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0459 -0.7297 -1.2641 5 7 3.4849 -0.5702 -1.3632 6 6 3.9751 0.4800 -2.0512 7 8 5.1744 0.6838 -2.0775 8 6 3.0647 1.3752 -2.7670 9 1 1.9965 1.2460 -2.6742 10 6 3.5789 2.3994 -3.5720 11 7 4.8713 2.5555 -3.6846 12 14 2.4170 3.5423 -4.4849 13 1 1.5530 4.2531 -3.5084 14 1 3.2055 4.5324 -5.2615 15 1 1.5690 2.7496 -5.4110 16 6 4.4315 -1.5137 -0.7389 17 6 3.9600 -1.9188 0.6654 18 6 3.3878 -0.7096 1.3771 19 8 1.9900 -0.6505 1.1269 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.5716 -0.3037 -2.1482 24 1 1.8019 -1.7898 -1.1965 25 1 5.2275 3.2646 -4.2424 26 1 5.4111 -1.0417 -0.6651 27 1 4.5097 -2.4052 -1.3612 28 1 3.1923 -2.6882 0.5827 29 1 4.8046 -2.3085 1.2335 30 1 3.5630 -0.7997 2.4492 31 1 3.8653 0.1954 1.0014 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061920739.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:41 Heat of formation + Delta-G solvation = -105.377395 kcal Electronic energy + Delta-G solvation = -15137.633886 eV Core-core repulsion = 12611.199697 eV Total energy + Delta-G solvation = -2526.434189 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.97062 -38.84407 -35.77252 -34.82482 -34.45965 -31.13623 -28.78218 -27.45258 -26.11760 -22.98220 -22.24985 -20.75941 -18.57504 -17.97498 -17.51910 -17.10158 -16.46399 -16.13224 -15.33055 -15.10708 -14.44874 -14.04017 -13.81505 -13.67513 -13.25434 -13.00846 -12.94047 -12.78058 -12.43342 -12.19752 -12.11135 -12.04678 -11.79954 -11.46612 -10.93281 -10.49790 -9.81916 -9.06339 -8.30894 -6.86292 1.38517 1.41819 1.53335 2.22172 2.42592 2.77446 2.79450 3.55691 3.88608 3.95822 4.21700 4.23315 4.33184 4.46190 4.54819 4.63441 4.82709 4.83495 4.92424 4.99184 5.06243 5.12396 5.22152 5.31940 5.40800 5.78265 6.13144 6.32470 6.71262 6.85637 7.37516 8.43490 8.64762 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.034215 B = 0.011626 C = 0.009336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.165754 B = 2407.875992 C = 2998.521426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.082 3.918 3 H 0.020 0.980 4 C 0.095 3.905 5 N -0.645 5.645 6 C 0.534 3.466 7 O -0.633 6.633 8 C -0.566 4.566 9 H 0.094 0.906 10 C 0.028 3.972 11 N -0.823 5.823 12 Si 0.993 3.007 13 H -0.253 1.253 14 H -0.276 1.276 15 H -0.251 1.251 16 C 0.112 3.888 17 C -0.147 4.147 18 C 0.077 3.923 19 O -0.393 6.393 20 H 0.076 0.924 21 H 0.068 0.932 22 H 0.081 0.919 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.274 0.726 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.360 -5.547 6.328 12.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.022 3.978 3 H 0.038 0.962 4 C -0.029 4.029 5 N -0.381 5.381 6 C 0.340 3.660 7 O -0.521 6.521 8 C -0.602 4.602 9 H 0.112 0.888 10 C -0.187 4.187 11 N -0.453 5.453 12 Si 0.812 3.188 13 H -0.177 1.177 14 H -0.201 1.201 15 H -0.174 1.174 16 C -0.011 4.011 17 C -0.185 4.185 18 C 0.001 3.999 19 O -0.312 6.312 20 H 0.095 0.905 21 H 0.087 0.913 22 H 0.100 0.900 23 H 0.101 0.899 24 H 0.098 0.902 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.105 0.895 29 H 0.122 0.878 30 H 0.132 0.868 31 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -8.678 -5.478 6.369 12.078 hybrid contribution 0.472 0.717 -0.776 1.157 sum -8.206 -4.762 5.593 11.013 Atomic orbital electron populations 1.21681 0.90099 1.03708 1.03211 1.22108 0.96453 0.93748 0.85487 0.96239 1.22279 0.80828 1.00678 0.99119 1.47835 1.06065 1.27778 1.56390 1.18781 0.88093 0.80534 0.78579 1.90526 1.18780 1.75602 1.67191 1.21490 0.94388 1.14812 1.29547 0.88773 1.27016 0.96921 0.98673 0.96065 1.70186 1.15221 1.28350 1.31503 0.85140 0.77986 0.77248 0.78433 1.17652 1.20108 1.17435 1.21534 0.93371 0.91903 0.94335 1.22379 1.02615 0.98986 0.94516 1.22194 0.80563 0.96622 1.00549 1.86129 1.23727 1.77093 1.44243 0.90483 0.91314 0.90032 0.89882 0.90219 0.91640 0.93261 0.93142 0.89540 0.87789 0.86787 0.96410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 9.55 71.98 0.69 -2.62 16 2 C 0.08 2.86 3.25 31.21 0.10 2.96 16 3 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 4 C 0.10 3.61 4.66 87.25 0.41 4.01 16 5 N -0.65 -30.25 2.19 -823.04 -1.80 -32.05 16 6 C 0.53 31.56 7.56 86.36 0.65 32.22 16 7 O -0.63 -43.31 14.33 -4.28 -0.06 -43.37 16 8 C -0.57 -31.98 8.68 24.83 0.22 -31.77 16 9 H 0.09 4.71 5.86 -2.91 -0.02 4.70 16 10 C 0.03 1.58 5.50 85.30 0.47 2.05 16 11 N -0.82 -50.85 11.84 21.83 0.26 -50.59 16 12 Si 0.99 40.67 29.56 68.60 2.03 42.70 16 13 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 14 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 15 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 16 C 0.11 4.53 6.18 86.38 0.53 5.07 16 17 C -0.15 -4.40 5.79 30.31 0.18 -4.23 16 18 C 0.08 2.51 6.37 71.50 0.46 2.96 16 19 O -0.39 -13.23 9.47 -117.81 -1.12 -14.34 16 20 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 21 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 23 H 0.08 3.24 5.76 -2.39 -0.01 3.22 16 24 H 0.08 2.61 8.11 -2.39 -0.02 2.59 16 25 H 0.27 15.37 8.29 -92.71 -0.77 14.60 16 26 H 0.05 2.31 6.95 -2.39 -0.02 2.30 16 27 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.09 2.35 8.01 -2.39 -0.02 2.33 16 29 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 31 H 0.02 0.72 7.40 -2.39 -0.02 0.70 16 Total: -1.00 -75.56 253.64 4.12 -71.44 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 1.11 Total: 15.56 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 3.70 Total: 10.66 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -1.54 Total: -82.65 kcal Atomic # 8 Polarization: -56.54 SS G_CDS: -1.18 Total: -57.72 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -75.56 4.12 -71.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061920739.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.937 kcal (2) G-P(sol) polarization free energy of solvation -75.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds