Wall clock time and date at job start Sun Mar 29 2020 21:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47175 * 2 1 4 4 C 1.54807 * 109.46746 * 119.99660 * 2 1 3 5 5 N 1.45125 * 109.54162 * 187.88320 * 4 2 1 6 6 C 1.34779 * 118.75634 * 90.70573 * 5 4 2 7 7 O 1.21683 * 119.99985 * 174.78585 * 6 5 4 8 8 C 1.46376 * 119.99933 * 354.79689 * 6 5 4 9 9 H 1.07997 * 120.00233 * 5.00257 * 8 6 5 10 10 C 1.40050 * 119.99937 * 185.00672 * 8 6 5 11 11 N 1.30672 * 119.99953 * 5.04893 * 10 8 6 12 12 Si 1.86800 * 120.00193 * 185.05317 * 10 8 6 13 13 H 1.48500 * 109.47240 * 84.99886 * 12 10 8 14 14 H 1.48504 * 109.47094 * 204.99713 * 12 10 8 15 15 H 1.48499 * 109.46863 * 324.99425 * 12 10 8 16 16 C 1.47501 * 122.48568 * 270.73486 * 5 4 2 17 17 C 1.53574 * 111.02548 * 41.60064 * 16 5 4 18 18 C 1.51534 * 109.57895 * 39.98416 * 17 16 5 19 19 O 1.38117 * 109.40436 * 240.11942 * 2 1 3 20 20 H 1.08999 * 109.46847 * 300.00378 * 1 2 3 21 21 H 1.08994 * 109.46707 * 60.00558 * 1 2 3 22 22 H 1.08999 * 109.47299 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46393 * 67.86561 * 4 2 1 24 24 H 1.08997 * 109.45075 * 307.89696 * 4 2 1 25 25 H 0.97001 * 120.00162 * 180.02562 * 11 10 8 26 26 H 1.09002 * 109.16583 * 281.20144 * 16 5 4 27 27 H 1.09001 * 109.12733 * 161.97125 * 16 5 4 28 28 H 1.08998 * 109.45276 * 279.94823 * 17 16 5 29 29 H 1.08999 * 109.43476 * 160.00493 * 17 16 5 30 30 H 1.09001 * 109.59511 * 28.37605 * 18 17 16 31 31 H 1.09003 * 109.59054 * 148.67047 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0460 -0.7297 1.2641 5 7 3.4850 -0.5703 1.3632 6 6 3.9752 0.4796 2.0516 7 8 5.1744 0.5837 2.2300 8 6 3.0651 1.4944 2.5849 9 1 1.9969 1.3613 2.4974 10 6 3.5794 2.6381 3.2084 11 7 4.8691 2.8479 3.2272 12 14 2.4220 3.8635 4.0134 13 1 2.1161 3.4202 5.3973 14 1 3.0666 5.2008 4.0531 15 1 1.1632 3.9439 3.2296 16 6 4.4314 -1.5136 0.7385 17 6 3.9596 -1.9187 -0.6657 18 6 3.3873 -0.7096 -1.3776 19 8 1.9889 -0.6490 -1.1295 20 1 -0.3633 0.5139 0.8900 21 1 -0.3632 0.5137 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 1.8019 -1.7899 1.1965 24 1 1.5717 -0.3036 2.1481 25 1 5.2254 3.6398 3.6595 26 1 4.5110 -2.4052 1.3605 27 1 5.4106 -1.0405 0.6644 28 1 3.1921 -2.6882 -0.5828 29 1 4.8043 -2.3083 -1.2338 30 1 3.8646 0.1956 -1.0020 31 1 3.5648 -0.7986 -2.4494 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061920740.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:44 Heat of formation + Delta-G solvation = -83.255734 kcal Electronic energy + Delta-G solvation = -15161.517501 eV Core-core repulsion = 12636.042579 eV Total energy + Delta-G solvation = -2525.474922 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.35384 -36.92924 -33.95272 -33.22439 -32.43939 -29.64337 -26.89904 -25.73136 -24.53414 -21.30015 -20.77284 -18.91973 -16.66769 -16.24495 -15.91364 -15.31155 -14.88954 -14.36207 -13.64006 -13.36917 -12.78158 -12.41526 -12.25386 -12.17383 -11.78571 -11.39584 -11.16374 -11.12873 -10.84726 -10.70736 -10.38703 -10.22282 -10.12487 -9.98599 -9.01283 -8.86495 -7.61073 -7.20601 -6.24213 -4.67473 3.11799 3.18574 3.20720 4.05598 4.16247 4.48697 4.54502 5.30994 5.38857 5.52266 5.60304 5.71787 5.84535 5.86055 5.97323 6.00600 6.16683 6.29846 6.32329 6.34740 6.48830 6.53078 6.67511 6.72303 7.41202 7.67691 8.03913 8.18591 8.32078 8.98878 9.38932 10.53725 10.72032 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.033146 B = 0.011952 C = 0.009568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.536384 B = 2342.233706 C = 2925.624763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.077 3.923 3 H 0.060 0.940 4 C 0.102 3.898 5 N -0.644 5.644 6 C 0.553 3.447 7 O -0.579 6.579 8 C -0.544 4.544 9 H 0.073 0.927 10 C 0.088 3.912 11 N -0.768 5.768 12 Si 0.904 3.096 13 H -0.271 1.271 14 H -0.280 1.280 15 H -0.264 1.264 16 C 0.120 3.880 17 C -0.162 4.162 18 C 0.080 3.920 19 O -0.395 6.395 20 H 0.071 0.929 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.086 0.914 25 H 0.269 0.731 26 H 0.039 0.961 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.762 -4.916 -5.747 10.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.017 3.983 3 H 0.078 0.922 4 C -0.023 4.023 5 N -0.382 5.382 6 C 0.359 3.641 7 O -0.462 6.462 8 C -0.581 4.581 9 H 0.091 0.909 10 C -0.132 4.132 11 N -0.396 5.396 12 Si 0.729 3.271 13 H -0.196 1.196 14 H -0.205 1.205 15 H -0.188 1.188 16 C -0.004 4.004 17 C -0.201 4.201 18 C 0.003 3.997 19 O -0.314 6.314 20 H 0.090 0.910 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.104 0.896 25 H 0.080 0.920 26 H 0.057 0.943 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.039 -4.834 -5.700 9.609 hybrid contribution -0.371 0.643 0.610 0.961 sum -6.410 -4.191 -5.090 9.196 Atomic orbital electron populations 1.21694 0.93642 1.02036 1.02112 1.22172 0.93861 0.96299 0.85985 0.92197 1.22012 0.83094 0.98818 0.98415 1.47937 1.04081 1.28812 1.57364 1.18346 0.88533 0.79760 0.77498 1.90581 1.16714 1.77113 1.61795 1.21006 0.93349 1.03973 1.39725 0.90906 1.25733 0.95021 0.98021 0.94381 1.69999 1.12481 1.24264 1.32875 0.86435 0.80936 0.79590 0.80138 1.19589 1.20499 1.18847 1.21346 0.94887 0.92738 0.91436 1.22463 1.01054 0.99222 0.97342 1.22039 0.81147 0.97994 0.98487 1.86144 1.23340 1.77633 1.44305 0.91037 0.92441 0.92444 0.92803 0.89603 0.92040 0.94264 0.90152 0.91330 0.90960 0.92346 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.55 37.16 0.35 -1.62 16 2 C 0.08 1.39 3.24 -25.78 -0.08 1.31 16 3 H 0.06 1.25 8.03 -51.93 -0.42 0.84 16 4 C 0.10 2.00 4.49 -3.83 -0.02 1.98 16 5 N -0.64 -14.88 2.19 -174.13 -0.38 -15.26 16 6 C 0.55 15.71 7.54 -12.99 -0.10 15.61 16 7 O -0.58 -18.74 14.41 5.20 0.07 -18.66 16 8 C -0.54 -15.04 8.56 -35.63 -0.30 -15.35 16 9 H 0.07 1.83 5.97 -52.49 -0.31 1.52 16 10 C 0.09 2.44 5.49 -17.37 -0.10 2.34 16 11 N -0.77 -22.84 11.87 55.55 0.66 -22.18 16 12 Si 0.90 19.88 29.56 -169.99 -5.03 14.85 16 13 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 14 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 15 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 16 C 0.12 2.41 6.12 -3.20 -0.02 2.39 16 17 C -0.16 -2.61 5.79 -27.18 -0.16 -2.77 16 18 C 0.08 1.36 6.36 36.42 0.23 1.59 16 19 O -0.39 -7.11 9.49 -26.89 -0.26 -7.36 16 20 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 21 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.05 0.95 8.11 -51.93 -0.42 0.53 16 24 H 0.09 1.71 6.06 -51.93 -0.31 1.40 16 25 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.08 1.80 7.06 -51.93 -0.37 1.43 16 28 H 0.07 1.06 8.02 -51.93 -0.42 0.65 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 1.17 7.40 -51.93 -0.38 0.79 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 253.79 15.07 3.82 3.82 Total: -1.00 -33.07 253.79 -5.60 -38.67 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -4.30 Total: 0.64 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -0.19 Total: 5.49 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.28 Total: -37.44 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.18 Total: -26.03 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.03 Total: 14.85 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -33.07 -5.60 -38.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061920740.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.587 kcal (2) G-P(sol) polarization free energy of solvation -33.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds