Wall clock time and date at job start Sun Mar 29 2020 21:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47175 * 2 1 4 4 C 1.54807 * 109.46746 * 119.99660 * 2 1 3 5 5 N 1.45125 * 109.54162 * 187.88320 * 4 2 1 6 6 C 1.34779 * 118.75634 * 90.70573 * 5 4 2 7 7 O 1.21683 * 119.99985 * 174.78585 * 6 5 4 8 8 C 1.46376 * 119.99933 * 354.79689 * 6 5 4 9 9 H 1.07997 * 120.00233 * 5.00257 * 8 6 5 10 10 C 1.40050 * 119.99937 * 185.00672 * 8 6 5 11 11 N 1.30672 * 119.99953 * 5.04893 * 10 8 6 12 12 Si 1.86800 * 120.00193 * 185.05317 * 10 8 6 13 13 H 1.48500 * 109.47240 * 84.99886 * 12 10 8 14 14 H 1.48504 * 109.47094 * 204.99713 * 12 10 8 15 15 H 1.48499 * 109.46863 * 324.99425 * 12 10 8 16 16 C 1.47501 * 122.48568 * 270.73486 * 5 4 2 17 17 C 1.53574 * 111.02548 * 41.60064 * 16 5 4 18 18 C 1.51534 * 109.57895 * 39.98416 * 17 16 5 19 19 O 1.38117 * 109.40436 * 240.11942 * 2 1 3 20 20 H 1.08999 * 109.46847 * 300.00378 * 1 2 3 21 21 H 1.08994 * 109.46707 * 60.00558 * 1 2 3 22 22 H 1.08999 * 109.47299 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46393 * 67.86561 * 4 2 1 24 24 H 1.08997 * 109.45075 * 307.89696 * 4 2 1 25 25 H 0.97001 * 120.00162 * 180.02562 * 11 10 8 26 26 H 1.09002 * 109.16583 * 281.20144 * 16 5 4 27 27 H 1.09001 * 109.12733 * 161.97125 * 16 5 4 28 28 H 1.08998 * 109.45276 * 279.94823 * 17 16 5 29 29 H 1.08999 * 109.43476 * 160.00493 * 17 16 5 30 30 H 1.09001 * 109.59511 * 28.37605 * 18 17 16 31 31 H 1.09003 * 109.59054 * 148.67047 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0460 -0.7297 1.2641 5 7 3.4850 -0.5703 1.3632 6 6 3.9752 0.4796 2.0516 7 8 5.1744 0.5837 2.2300 8 6 3.0651 1.4944 2.5849 9 1 1.9969 1.3613 2.4974 10 6 3.5794 2.6381 3.2084 11 7 4.8691 2.8479 3.2272 12 14 2.4220 3.8635 4.0134 13 1 2.1161 3.4202 5.3973 14 1 3.0666 5.2008 4.0531 15 1 1.1632 3.9439 3.2296 16 6 4.4314 -1.5136 0.7385 17 6 3.9596 -1.9187 -0.6657 18 6 3.3873 -0.7096 -1.3776 19 8 1.9889 -0.6490 -1.1295 20 1 -0.3633 0.5139 0.8900 21 1 -0.3632 0.5137 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 1.8019 -1.7899 1.1965 24 1 1.5717 -0.3036 2.1481 25 1 5.2254 3.6398 3.6595 26 1 4.5110 -2.4052 1.3605 27 1 5.4106 -1.0405 0.6644 28 1 3.1921 -2.6882 -0.5828 29 1 4.8043 -2.3083 -1.2338 30 1 3.8646 0.1956 -1.0020 31 1 3.5648 -0.7986 -2.4494 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061920740.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:44 Heat of formation + Delta-G solvation = -106.417632 kcal Electronic energy + Delta-G solvation = -15162.521876 eV Core-core repulsion = 12636.042579 eV Total energy + Delta-G solvation = -2526.479297 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.95680 -38.83414 -35.77461 -34.82098 -34.45606 -31.11884 -28.78220 -27.45594 -26.10672 -22.97861 -22.23481 -20.74818 -18.59622 -17.97828 -17.47255 -17.09776 -16.42937 -16.17571 -15.32817 -15.08289 -14.39386 -14.11265 -13.78738 -13.67947 -13.23154 -13.00851 -12.92113 -12.79424 -12.48199 -12.18263 -12.10770 -12.03092 -11.80103 -11.45715 -10.93746 -10.48971 -9.81341 -9.07693 -8.32491 -6.85234 1.38332 1.40149 1.54322 2.21813 2.42319 2.77572 2.80628 3.56192 3.88770 3.96323 4.20829 4.24973 4.34710 4.46856 4.55448 4.64317 4.82237 4.83551 4.92958 4.99711 5.06759 5.13114 5.23581 5.31636 5.41210 5.78214 6.13178 6.32759 6.71948 6.85787 7.37486 8.43256 8.64381 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.033146 B = 0.011952 C = 0.009568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.536384 B = 2342.233706 C = 2925.624763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.081 3.919 3 H 0.023 0.977 4 C 0.098 3.902 5 N -0.645 5.645 6 C 0.534 3.466 7 O -0.634 6.634 8 C -0.564 4.564 9 H 0.094 0.906 10 C 0.029 3.971 11 N -0.823 5.823 12 Si 0.992 3.008 13 H -0.261 1.261 14 H -0.275 1.275 15 H -0.244 1.244 16 C 0.114 3.886 17 C -0.147 4.147 18 C 0.076 3.924 19 O -0.393 6.393 20 H 0.080 0.920 21 H 0.067 0.933 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.274 0.726 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.017 0.983 31 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.346 -5.520 -6.387 12.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.021 3.979 3 H 0.041 0.959 4 C -0.026 4.026 5 N -0.381 5.381 6 C 0.340 3.660 7 O -0.522 6.522 8 C -0.601 4.601 9 H 0.112 0.888 10 C -0.186 4.186 11 N -0.453 5.453 12 Si 0.811 3.189 13 H -0.186 1.186 14 H -0.200 1.200 15 H -0.167 1.167 16 C -0.009 4.009 17 C -0.185 4.185 18 C 0.000 4.000 19 O -0.312 6.312 20 H 0.099 0.901 21 H 0.086 0.914 22 H 0.095 0.905 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.122 0.878 30 H 0.036 0.964 31 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.670 -5.488 -6.378 12.081 hybrid contribution 0.478 0.748 0.759 1.169 sum -8.191 -4.740 -5.618 11.006 Atomic orbital electron populations 1.21680 0.90244 1.03643 1.03158 1.22123 0.96343 0.94005 0.85384 0.95892 1.22232 0.80746 1.00565 0.99039 1.47836 1.06064 1.27887 1.56308 1.18786 0.88057 0.81246 0.77862 1.90527 1.18817 1.78803 1.64054 1.21494 0.94354 1.04310 1.39902 0.88824 1.27000 0.96869 1.00269 0.94467 1.70177 1.15356 1.25481 1.34255 0.85118 0.78593 0.76099 0.79111 1.18553 1.19983 1.16721 1.21518 0.93131 0.91981 0.94298 1.22379 1.02635 0.99002 0.94466 1.22185 0.80625 0.96610 1.00548 1.86167 1.23645 1.77304 1.44062 0.90122 0.91351 0.90517 0.90204 0.90204 0.91627 0.93196 0.93476 0.89517 0.87757 0.96404 0.86832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.34 9.55 71.98 0.69 -2.65 16 2 C 0.08 2.85 3.24 31.21 0.10 2.95 16 3 H 0.02 0.97 8.03 -2.39 -0.02 0.96 16 4 C 0.10 3.72 4.49 87.25 0.39 4.11 16 5 N -0.65 -30.22 2.19 -823.05 -1.80 -32.02 16 6 C 0.53 31.54 7.54 86.36 0.65 32.19 16 7 O -0.63 -43.36 14.41 -4.30 -0.06 -43.42 16 8 C -0.56 -31.81 8.56 24.83 0.21 -31.60 16 9 H 0.09 4.69 5.97 -2.91 -0.02 4.67 16 10 C 0.03 1.62 5.49 85.30 0.47 2.09 16 11 N -0.82 -50.79 11.87 21.84 0.26 -50.53 16 12 Si 0.99 40.71 29.56 68.60 2.03 42.74 16 13 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 14 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 15 H -0.24 -9.14 7.11 99.48 0.71 -8.44 16 16 C 0.11 4.62 6.12 86.38 0.53 5.15 16 17 C -0.15 -4.39 5.79 30.31 0.18 -4.22 16 18 C 0.08 2.50 6.36 71.50 0.45 2.96 16 19 O -0.39 -13.26 9.49 -119.15 -1.13 -14.39 16 20 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 21 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 22 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.08 2.61 8.11 -2.39 -0.02 2.59 16 24 H 0.08 3.10 6.06 -2.39 -0.01 3.08 16 25 H 0.27 15.34 8.29 -92.71 -0.77 14.57 16 26 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.05 2.21 7.06 -2.39 -0.02 2.19 16 28 H 0.09 2.35 8.02 -2.39 -0.02 2.33 16 29 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.02 0.72 7.40 -2.39 -0.02 0.70 16 31 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 Total: -1.00 -75.43 253.79 4.08 -71.35 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 1.11 Total: 15.30 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 3.67 Total: 10.98 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -1.54 Total: -82.56 kcal Atomic # 8 Polarization: -56.62 SS G_CDS: -1.19 Total: -57.81 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -75.43 4.08 -71.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061920740.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.064 kcal (2) G-P(sol) polarization free energy of solvation -75.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds