Wall clock time and date at job start Sun Mar 29 2020 22:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37091 * 120.00032 * 2 1 4 4 H 1.08005 * 119.99641 * 203.79895 * 3 2 1 5 5 C 1.38945 * 120.00211 * 23.80028 * 3 2 1 6 6 N 1.31416 * 119.99841 * 15.13442 * 5 3 2 7 7 Si 1.86797 * 120.00383 * 195.13249 * 5 3 2 8 8 H 1.48500 * 109.47438 * 94.62157 * 7 5 3 9 9 H 1.48496 * 109.47326 * 214.62928 * 7 5 3 10 10 H 1.48508 * 109.46752 * 334.62689 * 7 5 3 11 11 C 1.34786 * 119.99646 * 180.02562 * 2 1 3 12 12 O 1.21294 * 119.99803 * 4.00224 * 11 2 1 13 13 C 1.50691 * 119.99544 * 184.00163 * 11 2 1 14 14 H 1.08997 * 109.52658 * 303.65563 * 13 11 2 15 15 C 1.53321 * 109.50464 * 183.49635 * 13 11 2 16 16 C 1.53172 * 108.96424 * 183.14285 * 15 13 11 17 17 C 1.53090 * 109.21867 * 56.95372 * 16 15 13 18 18 O 1.42898 * 109.41557 * 302.35925 * 17 16 15 19 19 C 1.42903 * 114.09838 * 61.15432 * 18 17 16 20 20 H 1.08992 * 109.47233 * 266.99244 * 1 2 3 21 21 H 1.08997 * 109.46900 * 26.99178 * 1 2 3 22 22 H 1.09006 * 109.47263 * 146.99270 * 1 2 3 23 23 H 0.97004 * 119.99817 * 180.02562 * 6 5 3 24 24 H 1.09004 * 109.62190 * 63.27138 * 15 13 11 25 25 H 1.08998 * 109.53152 * 302.95892 * 15 13 11 26 26 H 1.09001 * 109.52435 * 297.01689 * 16 15 13 27 27 H 1.09005 * 109.52174 * 176.89221 * 16 15 13 28 28 H 1.09010 * 109.47811 * 62.34323 * 17 16 15 29 29 H 1.09003 * 109.48559 * 182.36037 * 17 16 15 30 30 H 1.09003 * 109.48110 * 58.82308 * 19 18 17 31 31 H 1.09001 * 109.48284 * 178.84383 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1617 1.2269 -0.3775 5 6 1.5445 2.3394 0.4856 6 7 0.4507 2.2516 1.2088 7 14 2.2843 4.0131 0.1105 8 1 1.6249 4.5883 -1.0893 9 1 2.0773 4.9170 1.2704 10 1 3.7392 3.8645 -0.1477 11 6 2.1389 -1.1673 -0.0005 12 8 1.5346 -2.2164 -0.0743 13 6 3.6431 -1.1689 0.0906 14 1 4.0578 -0.5701 -0.7203 15 6 4.1609 -2.6080 -0.0174 16 6 5.6829 -2.6036 0.1553 17 6 6.0359 -1.9574 1.4975 18 8 5.4987 -0.6341 1.5435 19 6 4.0749 -0.5782 1.4353 20 1 -0.3633 -0.0539 1.0262 21 1 -0.3633 0.9157 -0.4664 22 1 -0.3634 -0.8618 -0.5598 23 1 0.0274 3.0560 1.5475 24 1 3.9060 -3.0163 -0.9954 25 1 3.7071 -3.2181 0.7635 26 1 6.1397 -2.0344 -0.6543 27 1 6.0547 -3.6281 0.1352 28 1 5.6126 -2.5500 2.3087 29 1 7.1196 -1.9141 1.6063 30 1 3.6259 -1.1527 2.2456 31 1 3.7458 0.4590 1.4994 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062235337.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:53 Heat of formation + Delta-G solvation = -87.530932 kcal Electronic energy + Delta-G solvation = -15028.575204 eV Core-core repulsion = 12502.914895 eV Total energy + Delta-G solvation = -2525.660308 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.42713 -37.67276 -34.85805 -32.96378 -31.55341 -30.77522 -26.46466 -24.93502 -24.27105 -23.03245 -20.09916 -18.96942 -17.12103 -16.02138 -15.67747 -15.35632 -14.48304 -14.37968 -14.37657 -13.53574 -13.26521 -12.84679 -12.32929 -12.04236 -11.74673 -11.34430 -11.21236 -10.97330 -10.83408 -10.72920 -10.45273 -10.37417 -10.25428 -9.82999 -9.12082 -9.05487 -8.38247 -7.74747 -6.42392 -4.01494 3.09541 3.20063 3.22911 3.84082 4.06404 4.33085 4.80380 5.01465 5.21029 5.25895 5.38504 5.65530 5.68142 5.85150 5.97358 6.15658 6.18931 6.32297 6.38389 6.51834 6.79958 6.80837 6.86085 6.98560 7.30270 7.36518 7.65952 7.75511 8.33144 9.02685 9.48294 9.89261 10.60813 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.031806 B = 0.011700 C = 0.009248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.132217 B = 2392.515778 C = 3026.825554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.442 5.442 3 C -0.341 4.341 4 H 0.099 0.901 5 C 0.040 3.960 6 N -0.865 5.865 7 Si 0.919 3.081 8 H -0.277 1.277 9 H -0.282 1.282 10 H -0.266 1.266 11 C 0.461 3.539 12 O -0.611 6.611 13 C -0.118 4.118 14 H 0.089 0.911 15 C -0.100 4.100 16 C -0.155 4.155 17 C 0.058 3.942 18 O -0.384 6.384 19 C 0.070 3.930 20 H 0.050 0.950 21 H 0.065 0.935 22 H 0.033 0.967 23 H 0.270 0.730 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.045 0.955 29 H 0.085 0.915 30 H 0.043 0.957 31 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.247 -2.890 -0.453 7.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.159 5.159 3 C -0.469 4.469 4 H 0.116 0.884 5 C -0.166 4.166 6 N -0.502 5.502 7 Si 0.745 3.255 8 H -0.203 1.203 9 H -0.208 1.208 10 H -0.190 1.190 11 C 0.249 3.751 12 O -0.498 6.498 13 C -0.140 4.140 14 H 0.107 0.893 15 C -0.138 4.138 16 C -0.193 4.193 17 C -0.019 4.019 18 O -0.302 6.302 19 C -0.006 4.006 20 H 0.068 0.932 21 H 0.084 0.916 22 H 0.052 0.948 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.062 0.938 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.885 -3.065 -0.362 7.545 hybrid contribution 0.042 0.778 -0.209 0.806 sum 6.927 -2.288 -0.571 7.317 Atomic orbital electron populations 1.21240 0.80816 0.99282 1.00781 1.43588 1.05636 1.04763 1.61911 1.19641 1.00555 0.84996 1.41721 0.88379 1.25336 0.96492 1.00113 0.94682 1.70039 1.19687 1.29812 1.30636 0.86031 0.79712 0.81620 0.78136 1.20325 1.20794 1.19020 1.19979 0.88855 0.83683 0.82544 1.90509 1.70237 1.31731 1.57334 1.21592 0.94723 0.97309 1.00380 0.89275 1.21392 0.93474 0.96072 1.02832 1.22220 0.97367 1.00847 0.98827 1.22526 0.98472 0.84882 0.96057 1.87938 1.21911 1.26417 1.93966 1.22714 0.79280 1.04392 0.94220 0.93190 0.91615 0.94840 0.91970 0.91595 0.91509 0.91365 0.91402 0.93657 0.89635 0.93835 0.85686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.05 8.72 59.85 0.52 3.57 16 2 N -0.44 -11.30 3.01 -122.19 -0.37 -11.67 16 3 C -0.34 -8.54 7.12 -14.94 -0.11 -8.65 16 4 H 0.10 2.36 6.22 -52.48 -0.33 2.03 16 5 C 0.04 0.99 4.99 -17.47 -0.09 0.90 16 6 N -0.86 -22.45 10.94 55.50 0.61 -21.84 16 7 Si 0.92 19.31 29.58 -169.99 -5.03 14.29 16 8 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 9 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 10 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 11 C 0.46 11.39 6.99 -10.99 -0.08 11.32 16 12 O -0.61 -16.44 15.55 5.55 0.09 -16.36 16 13 C -0.12 -2.45 1.91 -91.56 -0.18 -2.62 16 14 H 0.09 1.82 7.32 -51.93 -0.38 1.44 16 15 C -0.10 -1.79 4.66 -26.48 -0.12 -1.91 16 16 C -0.15 -2.22 6.13 -26.60 -0.16 -2.38 16 17 C 0.06 0.85 6.84 37.20 0.25 1.10 16 18 O -0.38 -7.06 10.77 -35.23 -0.38 -7.44 16 19 C 0.07 1.42 5.84 37.21 0.22 1.64 16 20 H 0.05 1.29 7.78 -51.93 -0.40 0.88 16 21 H 0.07 1.64 6.91 -51.93 -0.36 1.28 16 22 H 0.03 0.80 7.46 -51.93 -0.39 0.41 16 23 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 24 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 25 H 0.07 1.25 7.98 -51.93 -0.41 0.84 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.64 8.14 -51.92 -0.42 0.21 16 29 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.13 2.75 5.89 -51.93 -0.31 2.44 16 LS Contribution 251.09 15.07 3.78 3.78 Total: -1.00 -28.48 251.09 -5.28 -33.77 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -4.25 Total: 2.52 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 0.26 Total: 2.96 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: 0.24 Total: -33.51 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.29 Total: -23.80 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.29 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -28.48 -5.28 -33.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062235337.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.762 kcal (2) G-P(sol) polarization free energy of solvation -28.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds