Wall clock time and date at job start Sun Mar 29 2020 22:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37091 * 120.00032 * 2 1 4 4 H 1.08005 * 119.99641 * 203.79895 * 3 2 1 5 5 C 1.38945 * 120.00211 * 23.80028 * 3 2 1 6 6 N 1.31416 * 119.99841 * 15.13442 * 5 3 2 7 7 Si 1.86797 * 120.00383 * 195.13249 * 5 3 2 8 8 H 1.48500 * 109.47438 * 94.62157 * 7 5 3 9 9 H 1.48496 * 109.47326 * 214.62928 * 7 5 3 10 10 H 1.48508 * 109.46752 * 334.62689 * 7 5 3 11 11 C 1.34786 * 119.99646 * 180.02562 * 2 1 3 12 12 O 1.21294 * 119.99803 * 4.00224 * 11 2 1 13 13 C 1.50691 * 119.99544 * 184.00163 * 11 2 1 14 14 H 1.08997 * 109.52658 * 303.65563 * 13 11 2 15 15 C 1.53321 * 109.50464 * 183.49635 * 13 11 2 16 16 C 1.53172 * 108.96424 * 183.14285 * 15 13 11 17 17 C 1.53090 * 109.21867 * 56.95372 * 16 15 13 18 18 O 1.42898 * 109.41557 * 302.35925 * 17 16 15 19 19 C 1.42903 * 114.09838 * 61.15432 * 18 17 16 20 20 H 1.08992 * 109.47233 * 266.99244 * 1 2 3 21 21 H 1.08997 * 109.46900 * 26.99178 * 1 2 3 22 22 H 1.09006 * 109.47263 * 146.99270 * 1 2 3 23 23 H 0.97004 * 119.99817 * 180.02562 * 6 5 3 24 24 H 1.09004 * 109.62190 * 63.27138 * 15 13 11 25 25 H 1.08998 * 109.53152 * 302.95892 * 15 13 11 26 26 H 1.09001 * 109.52435 * 297.01689 * 16 15 13 27 27 H 1.09005 * 109.52174 * 176.89221 * 16 15 13 28 28 H 1.09010 * 109.47811 * 62.34323 * 17 16 15 29 29 H 1.09003 * 109.48559 * 182.36037 * 17 16 15 30 30 H 1.09003 * 109.48110 * 58.82308 * 19 18 17 31 31 H 1.09001 * 109.48284 * 178.84383 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1617 1.2269 -0.3775 5 6 1.5445 2.3394 0.4856 6 7 0.4507 2.2516 1.2088 7 14 2.2843 4.0131 0.1105 8 1 1.6249 4.5883 -1.0893 9 1 2.0773 4.9170 1.2704 10 1 3.7392 3.8645 -0.1477 11 6 2.1389 -1.1673 -0.0005 12 8 1.5346 -2.2164 -0.0743 13 6 3.6431 -1.1689 0.0906 14 1 4.0578 -0.5701 -0.7203 15 6 4.1609 -2.6080 -0.0174 16 6 5.6829 -2.6036 0.1553 17 6 6.0359 -1.9574 1.4975 18 8 5.4987 -0.6341 1.5435 19 6 4.0749 -0.5782 1.4353 20 1 -0.3633 -0.0539 1.0262 21 1 -0.3633 0.9157 -0.4664 22 1 -0.3634 -0.8618 -0.5598 23 1 0.0274 3.0560 1.5475 24 1 3.9060 -3.0163 -0.9954 25 1 3.7071 -3.2181 0.7635 26 1 6.1397 -2.0344 -0.6543 27 1 6.0547 -3.6281 0.1352 28 1 5.6126 -2.5500 2.3087 29 1 7.1196 -1.9141 1.6063 30 1 3.6259 -1.1527 2.2456 31 1 3.7458 0.4590 1.4994 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062235337.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:53 Heat of formation + Delta-G solvation = -105.902128 kcal Electronic energy + Delta-G solvation = -15029.371838 eV Core-core repulsion = 12502.914895 eV Total energy + Delta-G solvation = -2526.456943 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.13050 -39.33490 -36.82982 -34.44192 -33.48907 -32.26395 -28.37596 -26.78373 -25.76985 -24.58214 -21.60604 -20.80209 -18.92799 -17.91589 -17.15541 -16.86259 -16.26581 -16.09520 -15.98493 -15.24280 -14.89618 -14.43318 -13.95112 -13.60918 -13.41899 -13.20448 -13.07902 -12.66914 -12.53662 -12.35406 -12.06002 -11.94523 -11.73768 -11.29762 -11.00198 -10.57035 -10.26214 -9.75732 -8.33920 -5.99881 1.41723 1.48936 1.60304 1.93720 2.29325 2.82833 3.01855 3.19963 3.84395 3.96284 4.03081 4.12578 4.24777 4.43913 4.55686 4.70712 4.79185 4.88388 4.92954 4.96871 5.02347 5.08852 5.22319 5.28753 5.39473 5.43542 5.80640 6.27034 6.37170 7.07792 7.52043 7.92968 8.70694 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.031806 B = 0.011700 C = 0.009248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.132217 B = 2392.515778 C = 3026.825554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.133 3.867 2 N -0.454 5.454 3 C -0.354 4.354 4 H 0.107 0.893 5 C 0.000 4.000 6 N -0.896 5.896 7 Si 0.987 3.013 8 H -0.274 1.274 9 H -0.282 1.282 10 H -0.256 1.256 11 C 0.449 3.551 12 O -0.639 6.639 13 C -0.113 4.113 14 H 0.092 0.908 15 C -0.098 4.098 16 C -0.145 4.145 17 C 0.048 3.952 18 O -0.393 6.393 19 C 0.084 3.916 20 H 0.034 0.966 21 H 0.061 0.939 22 H 0.035 0.965 23 H 0.273 0.727 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.075 0.925 27 H 0.100 0.900 28 H 0.051 0.949 29 H 0.120 0.880 30 H 0.034 0.966 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.344 -2.642 -0.769 9.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.171 5.171 3 C -0.481 4.481 4 H 0.125 0.875 5 C -0.203 4.203 6 N -0.533 5.533 7 Si 0.810 3.190 8 H -0.200 1.200 9 H -0.208 1.208 10 H -0.180 1.180 11 C 0.239 3.761 12 O -0.528 6.528 13 C -0.134 4.134 14 H 0.110 0.890 15 C -0.136 4.136 16 C -0.182 4.182 17 C -0.028 4.028 18 O -0.312 6.312 19 C 0.007 3.993 20 H 0.053 0.947 21 H 0.080 0.920 22 H 0.054 0.946 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.094 0.906 27 H 0.118 0.882 28 H 0.069 0.931 29 H 0.138 0.862 30 H 0.053 0.947 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.997 -2.825 -0.680 9.455 hybrid contribution -0.623 0.636 -0.086 0.895 sum 8.374 -2.189 -0.766 8.690 Atomic orbital electron populations 1.21067 0.81222 0.99073 0.99728 1.43864 1.05818 1.05548 1.61917 1.19921 1.01032 0.84988 1.42124 0.87541 1.26180 0.96777 1.03339 0.94048 1.70137 1.20926 1.30873 1.31365 0.84997 0.79344 0.76932 0.77717 1.19994 1.20794 1.17979 1.20744 0.90717 0.82968 0.81654 1.90475 1.71330 1.32570 1.58472 1.21585 0.91584 0.99473 1.00759 0.88954 1.21395 0.96260 0.93707 1.02207 1.22189 0.94189 1.03011 0.98839 1.22883 1.00314 0.83174 0.96454 1.87920 1.20248 1.29000 1.93983 1.22359 0.80681 1.02752 0.93524 0.94712 0.91985 0.94607 0.91740 0.91933 0.92783 0.90611 0.88165 0.93092 0.86164 0.94724 0.87863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.78 8.72 127.77 1.11 7.89 16 2 N -0.45 -23.57 3.01 -658.89 -1.98 -25.55 16 3 C -0.35 -17.67 7.12 84.04 0.60 -17.07 16 4 H 0.11 5.05 6.22 -2.91 -0.02 5.03 16 5 C 0.00 -0.01 4.99 84.92 0.42 0.41 16 6 N -0.90 -46.78 10.94 21.66 0.24 -46.55 16 7 Si 0.99 38.94 29.58 68.60 2.03 40.97 16 8 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 9 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 10 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 11 C 0.45 22.43 6.99 87.65 0.61 23.04 16 12 O -0.64 -34.91 15.55 -3.07 -0.05 -34.96 16 13 C -0.11 -4.58 1.91 -11.40 -0.02 -4.60 16 14 H 0.09 3.68 7.32 -2.39 -0.02 3.66 16 15 C -0.10 -3.36 4.66 30.76 0.14 -3.21 16 16 C -0.14 -3.65 6.13 30.68 0.19 -3.47 16 17 C 0.05 1.24 6.84 72.01 0.49 1.73 16 18 O -0.39 -13.62 10.77 -148.98 -1.60 -15.22 16 19 C 0.08 3.34 5.84 72.01 0.42 3.76 16 20 H 0.03 1.84 7.78 -2.39 -0.02 1.82 16 21 H 0.06 3.15 6.91 -2.39 -0.02 3.13 16 22 H 0.04 1.76 7.46 -2.38 -0.02 1.74 16 23 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16 24 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 25 H 0.05 1.98 7.98 -2.39 -0.02 1.96 16 26 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 28 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.10 4.55 5.89 -2.39 -0.01 4.53 16 Total: -1.00 -60.40 251.09 3.72 -56.68 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 1.11 Total: 16.15 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 3.97 Total: 8.48 kcal Atomic # 7 Polarization: -70.35 SS G_CDS: -1.75 Total: -72.10 kcal Atomic # 8 Polarization: -48.53 SS G_CDS: -1.65 Total: -50.18 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -60.40 3.72 -56.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062235337.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.219 kcal (2) G-P(sol) polarization free energy of solvation -60.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds