Wall clock time and date at job start Sun Mar 29 2020 22:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.48995 * 2 1 4 4 C 1.53094 * 109.47984 * 120.03014 * 2 1 3 5 5 C 1.53173 * 109.16137 * 177.59168 * 4 2 1 6 6 H 1.08993 * 109.54870 * 62.97651 * 5 4 2 7 7 N 1.46904 * 109.54280 * 183.15413 * 5 4 2 8 8 C 1.46899 * 111.00029 * 205.00063 * 7 5 4 9 9 C 1.50703 * 109.47107 * 179.97438 * 8 7 5 10 10 H 1.07996 * 119.99751 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00001 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00094 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99955 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47171 * 89.99544 * 13 11 9 15 15 H 1.48500 * 109.46632 * 209.99795 * 13 11 9 16 16 H 1.48494 * 109.47053 * 329.99231 * 13 11 9 17 17 C 1.53173 * 109.03745 * 303.01507 * 5 4 2 18 18 C 1.53094 * 109.16341 * 56.98391 * 17 5 4 19 19 O 1.42903 * 109.41441 * 302.39133 * 18 17 5 20 20 H 1.09002 * 109.46881 * 299.97219 * 1 2 3 21 21 H 1.09003 * 109.47209 * 59.96980 * 1 2 3 22 22 H 1.08999 * 109.47101 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46778 * 180.02562 * 3 2 1 24 24 H 1.08996 * 109.47008 * 300.02780 * 3 2 1 25 25 H 1.08999 * 109.47132 * 60.03214 * 3 2 1 26 26 H 1.09003 * 109.52208 * 57.68543 * 4 2 1 27 27 H 1.08999 * 109.57196 * 297.52666 * 4 2 1 28 28 H 1.00902 * 111.00190 * 81.03763 * 7 5 4 29 29 H 1.09002 * 109.47043 * 299.99792 * 8 7 5 30 30 H 1.09001 * 109.47354 * 59.99854 * 8 7 5 31 31 H 0.97000 * 120.00333 * 179.97438 * 12 11 9 32 32 H 1.09002 * 109.52842 * 176.88887 * 17 5 4 33 33 H 1.09005 * 109.52906 * 297.08038 * 17 5 4 34 34 H 1.08996 * 109.48565 * 182.40722 * 18 17 5 35 35 H 1.09003 * 109.48118 * 62.36728 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4423 0.0000 4 6 2.0405 -0.7223 1.2496 5 6 3.5710 -0.7709 1.2121 6 1 3.9690 0.2433 1.2424 7 7 4.0671 -1.5281 2.3691 8 6 5.4368 -1.1248 2.7142 9 6 5.9104 -1.9207 3.9031 10 1 5.2588 -2.6525 4.3572 11 6 7.1751 -1.7137 4.4118 12 7 7.9684 -0.8222 3.8592 13 14 7.7623 -2.7008 5.8851 14 1 8.4243 -3.9444 5.4157 15 1 8.7288 -1.8912 6.6697 16 1 6.6005 -3.0511 6.7410 17 6 4.0176 -1.4601 -0.0808 18 6 3.4307 -0.7094 -1.2791 19 8 2.0066 -0.6742 -1.1664 20 1 -0.3633 0.5134 0.8903 21 1 -0.3634 0.5143 -0.8897 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1305 1.4419 -0.0005 24 1 1.6769 1.9564 -0.8897 25 1 1.6778 1.9561 0.8903 26 1 1.6442 -1.7375 1.2709 27 1 1.7148 -0.1853 2.1404 28 1 4.0141 -2.5216 2.2008 29 1 6.0953 -1.3117 1.8659 30 1 5.4522 -0.0628 2.9590 31 1 8.8580 -0.6763 4.2172 32 1 5.1058 -1.4499 -0.1421 33 1 3.6612 -2.4903 -0.0864 34 1 3.7099 -1.2203 -2.2005 35 1 3.8192 0.3089 -1.2958 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069859911.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:02 Heat of formation + Delta-G solvation = -63.922773 kcal Electronic energy + Delta-G solvation = -14830.698496 eV Core-core repulsion = 12441.895009 eV Total energy + Delta-G solvation = -2388.803487 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.81771 -35.65777 -33.45061 -32.79279 -30.55712 -27.96464 -27.24005 -25.90746 -23.18714 -21.94010 -20.79746 -19.02595 -16.54954 -15.99627 -15.59595 -15.02040 -14.50084 -14.31821 -13.83318 -13.55004 -13.01703 -12.58128 -12.30277 -12.16486 -12.02193 -11.73172 -11.56566 -11.35315 -10.97044 -10.85305 -10.78753 -10.67930 -10.45467 -10.10281 -9.69237 -9.30695 -9.08827 -8.49558 -7.27196 -6.04384 -4.06350 3.31085 3.37080 3.41901 3.90527 4.41899 4.84151 4.97119 5.06567 5.12429 5.28595 5.31980 5.49667 5.57606 5.62899 5.68192 5.72148 5.78740 5.83756 6.01586 6.06472 6.19649 6.21460 6.26842 6.40679 6.53412 6.65026 7.24188 7.41589 7.46115 7.78056 8.11924 8.39225 8.61017 9.03176 9.58721 11.06673 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.057835 B = 0.006301 C = 0.006138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.016752 B = 4442.645803 C = 4560.903955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.110 3.890 3 C -0.179 4.179 4 C -0.127 4.127 5 C 0.085 3.915 6 H 0.072 0.928 7 N -0.684 5.684 8 C 0.194 3.806 9 C -0.515 4.515 10 H 0.062 0.938 11 C 0.055 3.945 12 N -0.899 5.899 13 Si 0.899 3.101 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.273 1.273 17 C -0.184 4.184 18 C 0.064 3.936 19 O -0.379 6.379 20 H 0.069 0.931 21 H 0.059 0.941 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.329 0.671 29 H -0.013 1.013 30 H 0.026 0.974 31 H 0.261 0.739 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.054 2.086 -8.712 14.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.070 3.930 3 C -0.236 4.236 4 C -0.165 4.165 5 C -0.026 4.026 6 H 0.091 0.909 7 N -0.313 5.313 8 C 0.068 3.932 9 C -0.553 4.553 10 H 0.080 0.920 11 C -0.146 4.146 12 N -0.538 5.538 13 Si 0.727 3.273 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.224 4.224 18 C -0.013 4.013 19 O -0.298 6.298 20 H 0.088 0.912 21 H 0.078 0.922 22 H 0.080 0.920 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.146 0.854 29 H 0.004 0.996 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.275 2.512 -8.328 14.241 hybrid contribution 1.312 -0.779 0.254 1.547 sum -9.963 1.734 -8.074 12.940 Atomic orbital electron populations 1.21733 0.92808 1.02593 1.02072 1.21523 0.94381 0.91241 0.85830 1.22448 1.02339 0.96548 1.02298 1.22173 0.96238 1.01115 0.96992 1.21594 0.94028 0.98290 0.88659 0.90937 1.60739 1.27325 1.08548 1.34677 1.19572 0.81981 0.96742 0.94926 1.21201 0.98857 1.21444 1.13816 0.91992 1.24993 0.96657 0.95516 0.97415 1.69961 1.08592 1.33908 1.41345 0.86480 0.78540 0.79785 0.82507 1.20718 1.21230 1.19764 1.22959 1.01684 1.00723 0.97003 1.22505 0.81101 0.99556 0.98186 1.87896 1.21055 1.77561 1.43335 0.91185 0.92238 0.91978 0.91707 0.92316 0.91451 0.91514 0.90654 0.85396 0.99572 0.95581 0.92917 0.90852 0.91392 0.89506 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 8.85 37.16 0.33 -1.18 16 2 C 0.11 1.48 1.11 -90.57 -0.10 1.38 16 3 C -0.18 -2.24 7.94 37.16 0.29 -1.95 16 4 C -0.13 -1.95 4.53 -26.59 -0.12 -2.07 16 5 C 0.09 1.53 2.24 -67.53 -0.15 1.38 16 6 H 0.07 1.37 6.28 -51.93 -0.33 1.05 16 7 N -0.68 -14.82 6.24 -107.80 -0.67 -15.49 16 8 C 0.19 5.12 5.24 -4.98 -0.03 5.09 16 9 C -0.51 -14.71 9.32 -34.44 -0.32 -15.03 16 10 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 11 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 12 N -0.90 -26.95 13.29 55.43 0.74 -26.22 16 13 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 17 C -0.18 -2.98 5.39 -26.59 -0.14 -3.13 16 18 C 0.06 0.90 6.52 37.21 0.24 1.14 16 19 O -0.38 -5.61 10.24 -35.23 -0.36 -5.98 16 20 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.06 0.88 4.98 -51.93 -0.26 0.62 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.33 6.91 8.43 -39.29 -0.33 6.58 16 29 H -0.01 -0.37 7.54 -51.93 -0.39 -0.77 16 30 H 0.03 0.74 8.06 -51.93 -0.42 0.32 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.07 1.27 7.58 -51.93 -0.39 0.88 16 33 H 0.07 1.09 8.09 -51.93 -0.42 0.67 16 34 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.05 0.69 6.34 -51.93 -0.33 0.36 16 LS Contribution 275.76 15.07 4.16 4.16 Total: -1.00 -30.02 275.76 -7.05 -37.07 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.80 Total: 2.55 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -0.09 Total: -12.87 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 0.06 Total: -41.71 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.36 Total: -5.98 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.02 -7.05 -37.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069859911.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.851 kcal (2) G-P(sol) polarization free energy of solvation -30.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds