Wall clock time and date at job start Sun Mar 29 2020 22:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.48995 * 2 1 4 4 C 1.53094 * 109.47984 * 120.03014 * 2 1 3 5 5 C 1.53173 * 109.16137 * 177.59168 * 4 2 1 6 6 H 1.08993 * 109.54870 * 62.97651 * 5 4 2 7 7 N 1.46904 * 109.54280 * 183.15413 * 5 4 2 8 8 C 1.46899 * 111.00029 * 205.00063 * 7 5 4 9 9 C 1.50703 * 109.47107 * 179.97438 * 8 7 5 10 10 H 1.07996 * 119.99751 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00001 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00094 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99955 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47171 * 89.99544 * 13 11 9 15 15 H 1.48500 * 109.46632 * 209.99795 * 13 11 9 16 16 H 1.48494 * 109.47053 * 329.99231 * 13 11 9 17 17 C 1.53173 * 109.03745 * 303.01507 * 5 4 2 18 18 C 1.53094 * 109.16341 * 56.98391 * 17 5 4 19 19 O 1.42903 * 109.41441 * 302.39133 * 18 17 5 20 20 H 1.09002 * 109.46881 * 299.97219 * 1 2 3 21 21 H 1.09003 * 109.47209 * 59.96980 * 1 2 3 22 22 H 1.08999 * 109.47101 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46778 * 180.02562 * 3 2 1 24 24 H 1.08996 * 109.47008 * 300.02780 * 3 2 1 25 25 H 1.08999 * 109.47132 * 60.03214 * 3 2 1 26 26 H 1.09003 * 109.52208 * 57.68543 * 4 2 1 27 27 H 1.08999 * 109.57196 * 297.52666 * 4 2 1 28 28 H 1.00902 * 111.00190 * 81.03763 * 7 5 4 29 29 H 1.09002 * 109.47043 * 299.99792 * 8 7 5 30 30 H 1.09001 * 109.47354 * 59.99854 * 8 7 5 31 31 H 0.97000 * 120.00333 * 179.97438 * 12 11 9 32 32 H 1.09002 * 109.52842 * 176.88887 * 17 5 4 33 33 H 1.09005 * 109.52906 * 297.08038 * 17 5 4 34 34 H 1.08996 * 109.48565 * 182.40722 * 18 17 5 35 35 H 1.09003 * 109.48118 * 62.36728 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4423 0.0000 4 6 2.0405 -0.7223 1.2496 5 6 3.5710 -0.7709 1.2121 6 1 3.9690 0.2433 1.2424 7 7 4.0671 -1.5281 2.3691 8 6 5.4368 -1.1248 2.7142 9 6 5.9104 -1.9207 3.9031 10 1 5.2588 -2.6525 4.3572 11 6 7.1751 -1.7137 4.4118 12 7 7.9684 -0.8222 3.8592 13 14 7.7623 -2.7008 5.8851 14 1 8.4243 -3.9444 5.4157 15 1 8.7288 -1.8912 6.6697 16 1 6.6005 -3.0511 6.7410 17 6 4.0176 -1.4601 -0.0808 18 6 3.4307 -0.7094 -1.2791 19 8 2.0066 -0.6742 -1.1664 20 1 -0.3633 0.5134 0.8903 21 1 -0.3634 0.5143 -0.8897 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1305 1.4419 -0.0005 24 1 1.6769 1.9564 -0.8897 25 1 1.6778 1.9561 0.8903 26 1 1.6442 -1.7375 1.2709 27 1 1.7148 -0.1853 2.1404 28 1 4.0141 -2.5216 2.2008 29 1 6.0953 -1.3117 1.8659 30 1 5.4522 -0.0628 2.9590 31 1 8.8580 -0.6763 4.2172 32 1 5.1058 -1.4499 -0.1421 33 1 3.6612 -2.4903 -0.0864 34 1 3.7099 -1.2203 -2.2005 35 1 3.8192 0.3089 -1.2958 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069859911.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:02 Heat of formation + Delta-G solvation = -84.578549 kcal Electronic energy + Delta-G solvation = -14831.594198 eV Core-core repulsion = 12441.895009 eV Total energy + Delta-G solvation = -2389.699189 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.03243 -37.30704 -34.87630 -34.50934 -32.23983 -29.34222 -28.21448 -27.76271 -24.56111 -23.80507 -22.27869 -20.24824 -18.60481 -17.14779 -17.03618 -16.71428 -16.00246 -15.77355 -15.24520 -15.05731 -14.36220 -14.19457 -13.91210 -13.62010 -13.17477 -12.93689 -12.86765 -12.75802 -12.64930 -12.55456 -12.14876 -12.10710 -11.98674 -11.87824 -11.39115 -10.91126 -10.68615 -10.42919 -9.09410 -8.24564 -6.36115 1.40016 1.41728 1.53647 2.38551 2.81984 3.08576 3.43842 3.77034 3.86927 3.93506 4.11473 4.20671 4.31601 4.43821 4.46869 4.67536 4.75381 4.80783 4.89507 4.91347 5.00789 5.04152 5.10157 5.13214 5.19526 5.27596 5.37187 5.42851 5.60244 6.00212 6.33170 6.43235 6.69593 6.86690 7.35090 8.86892 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.057835 B = 0.006301 C = 0.006138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.016752 B = 4442.645803 C = 4560.903955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.108 3.892 3 C -0.178 4.178 4 C -0.119 4.119 5 C 0.082 3.918 6 H 0.058 0.942 7 N -0.684 5.684 8 C 0.212 3.788 9 C -0.538 4.538 10 H 0.063 0.937 11 C 0.002 3.998 12 N -0.934 5.934 13 Si 0.974 3.026 14 H -0.271 1.271 15 H -0.281 1.281 16 H -0.265 1.265 17 C -0.178 4.178 18 C 0.068 3.932 19 O -0.385 6.385 20 H 0.084 0.916 21 H 0.071 0.929 22 H 0.061 0.939 23 H 0.048 0.952 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.334 0.666 29 H -0.037 1.037 30 H -0.004 1.004 31 H 0.266 0.734 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.137 1.640 -8.713 15.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.068 3.932 3 C -0.235 4.235 4 C -0.157 4.157 5 C -0.028 4.028 6 H 0.076 0.924 7 N -0.313 5.313 8 C 0.084 3.916 9 C -0.576 4.576 10 H 0.081 0.919 11 C -0.197 4.197 12 N -0.574 5.574 13 Si 0.798 3.202 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.189 1.189 17 C -0.218 4.218 18 C -0.009 4.009 19 O -0.304 6.304 20 H 0.103 0.897 21 H 0.090 0.910 22 H 0.080 0.920 23 H 0.067 0.933 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.151 0.849 29 H -0.019 1.019 30 H 0.014 0.986 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.126 0.874 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.385 2.065 -8.346 15.077 hybrid contribution 1.631 -0.608 0.221 1.754 sum -10.754 1.457 -8.125 13.557 Atomic orbital electron populations 1.21743 0.90624 1.03078 1.03428 1.21663 0.95978 0.91217 0.84330 1.22439 1.01332 0.96211 1.03516 1.22112 0.93771 1.01501 0.98342 1.21688 0.95873 0.97050 0.88237 0.92419 1.60645 1.24348 1.09139 1.37175 1.19183 0.83988 0.94730 0.93696 1.21561 0.99479 1.21911 1.14679 0.91856 1.25962 0.96688 0.96495 1.00527 1.70088 1.09064 1.35303 1.42951 0.85314 0.78127 0.78274 0.78472 1.19628 1.20621 1.18917 1.22854 1.00639 1.01022 0.97249 1.22527 0.80906 0.99732 0.97783 1.87903 1.21067 1.77799 1.43668 0.89716 0.91044 0.91962 0.93269 0.90762 0.90608 0.91557 0.90767 0.84910 1.01944 0.98558 0.92575 0.92656 0.91157 0.87359 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 8.85 71.98 0.64 -1.96 16 2 C 0.11 2.71 1.11 -10.76 -0.01 2.70 16 3 C -0.18 -4.17 7.94 71.98 0.57 -3.60 16 4 C -0.12 -3.55 4.53 30.68 0.14 -3.41 16 5 C 0.08 2.97 2.24 45.03 0.10 3.07 16 6 H 0.06 2.26 6.28 -2.39 -0.02 2.24 16 7 N -0.68 -30.21 6.24 -494.97 -3.09 -33.30 16 8 C 0.21 11.55 5.24 85.56 0.45 12.00 16 9 C -0.54 -31.19 9.32 25.60 0.24 -30.95 16 10 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 11 C 0.00 0.09 5.46 84.65 0.46 0.55 16 12 N -0.93 -56.87 13.29 21.45 0.28 -56.58 16 13 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 14 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 15 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 16 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 17 C -0.18 -5.78 5.39 30.68 0.17 -5.61 16 18 C 0.07 1.81 6.52 72.01 0.47 2.28 16 19 O -0.38 -10.63 10.24 -148.98 -1.53 -12.15 16 20 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 21 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.05 1.30 4.98 -2.38 -0.01 1.29 16 24 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 26 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.33 14.16 8.43 -89.69 -0.76 13.40 16 29 H -0.04 -2.16 7.54 -2.39 -0.02 -2.18 16 30 H 0.00 -0.22 8.06 -2.39 -0.02 -0.24 16 31 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 32 H 0.05 1.98 7.58 -2.39 -0.02 1.96 16 33 H 0.07 2.23 8.09 -2.38 -0.02 2.21 16 34 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.06 1.45 6.34 -2.39 -0.02 1.43 16 Total: -1.00 -64.02 275.76 1.21 -62.80 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.30 Total: 17.56 kcal Atomic # 6 Polarization: -28.16 SS G_CDS: 3.22 Total: -24.94 kcal Atomic # 7 Polarization: -87.08 SS G_CDS: -2.81 Total: -89.89 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -1.53 Total: -12.15 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -64.02 1.21 -62.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069859911.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.777 kcal (2) G-P(sol) polarization free energy of solvation -64.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds