Wall clock time and date at job start Sun Mar 29 2020 22:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 119.99828 * 2 1 4 4 H 1.48500 * 109.46856 * 239.99645 * 3 2 1 5 5 H 1.48493 * 109.47079 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47260 * 119.99936 * 3 2 1 7 7 C 1.38812 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99971 * 159.27658 * 7 2 1 9 9 N 1.36934 * 119.99992 * 339.27501 * 7 2 1 10 10 C 1.46507 * 119.99983 * 321.59797 * 9 7 2 11 11 C 1.52997 * 109.47135 * 269.99659 * 10 9 7 12 12 C 1.52996 * 109.47491 * 179.97438 * 11 10 9 13 13 O 1.42898 * 109.47570 * 180.02562 * 12 11 10 14 14 C 1.46493 * 120.00198 * 141.59287 * 9 7 2 15 15 C 1.54272 * 110.03022 * 62.55160 * 14 9 7 16 16 C 1.54963 * 104.16292 * 217.13754 * 15 14 9 17 17 C 1.54891 * 102.77391 * 37.88635 * 16 15 14 18 18 C 1.53870 * 110.03465 * 305.33693 * 14 9 7 19 19 H 0.97006 * 119.99846 * 355.02840 * 1 2 3 20 20 H 1.09002 * 109.47191 * 29.99694 * 10 9 7 21 21 H 1.08998 * 109.47154 * 149.99723 * 10 9 7 22 22 H 1.08996 * 109.47729 * 300.00299 * 11 10 9 23 23 H 1.09011 * 109.46718 * 59.99965 * 11 10 9 24 24 H 1.09005 * 109.47016 * 300.00766 * 12 11 10 25 25 H 1.09004 * 109.46544 * 60.00442 * 12 11 10 26 26 H 0.96704 * 114.00204 * 180.02562 * 13 12 11 27 27 H 1.08997 * 110.02122 * 183.94088 * 14 9 7 28 28 H 1.09005 * 110.48444 * 335.78674 * 15 14 9 29 29 H 1.09000 * 110.48875 * 98.42735 * 15 14 9 30 30 H 1.09002 * 110.72173 * 279.57436 * 16 15 14 31 31 H 1.08995 * 110.92652 * 156.29458 * 16 15 14 32 32 H 1.09003 * 110.48554 * 203.40557 * 17 16 15 33 33 H 1.09002 * 110.59872 * 80.82256 * 17 16 15 34 34 H 1.08998 * 110.03552 * 238.56616 * 18 14 9 35 35 H 1.08996 * 110.03248 * 359.97438 * 18 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0379 -1.2325 -0.3304 9 7 1.3921 -2.3495 0.4207 10 6 0.4697 -2.3101 1.5583 11 6 1.2459 -2.5586 2.8531 12 6 0.2828 -2.5169 4.0411 13 8 1.0078 -2.7484 5.2506 14 6 1.6529 -3.6162 -0.2673 15 6 3.1426 -3.9941 -0.1319 16 6 3.4984 -4.6295 -1.4997 17 6 2.7001 -3.7575 -2.5005 18 6 1.3715 -3.4663 -1.7726 19 1 -0.4850 0.8369 0.0728 20 1 -0.0095 -1.3322 1.6039 21 1 -0.2904 -3.0818 1.4366 22 1 1.7251 -3.5365 2.8076 23 1 2.0060 -1.7868 2.9748 24 1 -0.1961 -1.5388 4.0865 25 1 -0.4776 -3.2885 3.9196 26 1 0.4590 -2.7364 6.0467 27 1 1.0282 -4.4045 0.1527 28 1 3.7473 -3.1044 0.0441 29 1 3.2814 -4.7162 0.6727 30 1 3.1664 -5.6669 -1.5411 31 1 4.5684 -4.5598 -1.6948 32 1 2.5167 -4.3072 -3.4237 33 1 3.2320 -2.8293 -2.7096 34 1 0.6107 -4.1823 -2.0834 35 1 1.0404 -2.4511 -1.9912 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070714985.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:18 Heat of formation + Delta-G solvation = -51.685542 kcal Electronic energy + Delta-G solvation = -15034.321788 eV Core-core repulsion = 12646.048947 eV Total energy + Delta-G solvation = -2388.272841 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -37.76764 -36.57588 -34.46273 -31.62881 -30.17963 -27.77734 -26.53929 -25.08702 -22.38409 -20.38410 -19.83437 -18.98162 -17.04470 -16.03852 -15.35886 -14.93010 -14.56648 -14.20562 -13.66486 -13.03439 -12.66973 -12.52125 -12.10713 -11.71885 -11.12660 -10.90803 -10.69445 -10.52870 -10.47181 -10.35867 -10.19972 -10.11120 -10.07477 -9.69539 -9.60820 -9.44607 -9.35751 -8.39874 -6.51901 -5.70701 -3.34558 3.39749 3.45510 3.48768 4.49800 4.71804 5.32748 5.41547 5.48768 5.56398 5.67509 5.73670 5.86803 6.20190 6.21156 6.29311 6.33662 6.46057 6.47580 6.58594 6.63901 6.67505 6.78718 6.84158 6.93083 7.07997 7.19476 7.29137 7.45530 7.71377 7.88121 7.98774 8.58303 9.25323 9.87754 10.46528 11.24934 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.017393 B = 0.014095 C = 0.008972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.427480 B = 1986.077965 C = 3119.949123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.011 3.989 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.245 4.245 8 H 0.060 0.940 9 N -0.577 5.577 10 C 0.150 3.850 11 C -0.134 4.134 12 C 0.077 3.923 13 O -0.580 6.580 14 C 0.171 3.829 15 C -0.136 4.136 16 C -0.123 4.123 17 C -0.117 4.117 18 C -0.131 4.131 19 H 0.253 0.747 20 H 0.093 0.907 21 H 0.022 0.978 22 H 0.048 0.952 23 H 0.064 0.936 24 H 0.042 0.958 25 H 0.036 0.964 26 H 0.368 0.632 27 H 0.046 0.954 28 H 0.073 0.927 29 H 0.046 0.954 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.039 0.961 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.972 -6.211 2.356 6.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.188 4.188 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.375 4.375 8 H 0.077 0.923 9 N -0.296 5.296 10 C 0.023 3.977 11 C -0.174 4.174 12 C -0.001 4.001 13 O -0.384 6.384 14 C 0.063 3.937 15 C -0.175 4.175 16 C -0.161 4.161 17 C -0.155 4.155 18 C -0.170 4.170 19 H 0.063 0.937 20 H 0.110 0.890 21 H 0.040 0.960 22 H 0.067 0.933 23 H 0.083 0.917 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.213 0.787 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.322 -6.098 1.836 6.504 hybrid contribution -0.064 0.928 0.465 1.040 sum 1.257 -5.170 2.301 5.797 Atomic orbital electron populations 1.70064 1.05447 1.25981 1.51495 1.25139 0.94918 0.98559 1.00232 0.86574 0.79330 0.83844 0.78294 1.20748 1.21727 1.20964 1.18867 0.93557 0.85516 1.39586 0.92276 1.43877 1.51929 1.03393 1.30398 1.20794 0.90761 1.02214 0.83891 1.22243 0.99310 1.01498 0.94332 1.22298 0.94660 0.98499 0.84635 1.86532 1.39631 1.95532 1.16703 1.21047 0.92845 0.88516 0.91273 1.22867 0.99873 0.99762 0.95013 1.22440 0.98668 0.98318 0.96651 1.22255 0.97433 0.98963 0.96880 1.22541 0.95322 1.02514 0.96639 0.93742 0.88955 0.95953 0.93346 0.91744 0.93940 0.94531 0.78722 0.93575 0.90869 0.93560 0.92744 0.92975 0.93485 0.92016 0.94180 0.89597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.00 11.48 55.49 0.64 -24.36 16 2 C 0.01 0.31 4.96 -17.43 -0.09 0.22 16 3 Si 0.89 21.50 29.61 -169.99 -5.03 16.47 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 7 C -0.25 -6.51 7.75 -15.06 -0.12 -6.62 16 8 H 0.06 1.59 6.94 -52.49 -0.36 1.23 16 9 N -0.58 -14.03 2.38 -164.39 -0.39 -14.42 16 10 C 0.15 3.47 5.28 -4.04 -0.02 3.45 16 11 C -0.13 -2.79 5.91 -26.73 -0.16 -2.95 16 12 C 0.08 1.34 7.05 37.16 0.26 1.61 16 13 O -0.58 -9.60 13.66 -35.23 -0.48 -10.08 16 14 C 0.17 3.62 3.42 -66.81 -0.23 3.39 16 15 C -0.14 -2.59 6.43 -25.03 -0.16 -2.75 16 16 C -0.12 -2.02 6.91 -24.70 -0.17 -2.19 16 17 C -0.12 -2.08 6.83 -25.07 -0.17 -2.25 16 18 C -0.13 -2.68 6.24 -25.62 -0.16 -2.84 16 19 H 0.25 6.93 8.32 -40.82 -0.34 6.59 16 20 H 0.09 2.39 5.55 -51.93 -0.29 2.11 16 21 H 0.02 0.49 7.90 -51.93 -0.41 0.08 16 22 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.06 1.49 8.14 -51.92 -0.42 1.06 16 24 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.37 4.02 9.12 45.56 0.42 4.43 16 27 H 0.05 0.94 7.81 -51.93 -0.41 0.54 16 28 H 0.07 1.55 6.64 -51.93 -0.34 1.20 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 2.08 7.17 -51.93 -0.37 1.71 16 LS Contribution 280.10 15.07 4.22 4.22 Total: -1.00 -28.89 280.10 -7.19 -36.08 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -5.13 Total: 3.02 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -1.01 Total: -10.93 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.25 Total: -38.78 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.48 Total: -10.08 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.89 -7.19 -36.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070714985.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.604 kcal (2) G-P(sol) polarization free energy of solvation -28.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds