Wall clock time and date at job start Sun Mar 29 2020 22:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 119.99828 * 2 1 4 4 H 1.48500 * 109.46856 * 239.99645 * 3 2 1 5 5 H 1.48493 * 109.47079 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47260 * 119.99936 * 3 2 1 7 7 C 1.38812 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99971 * 159.27658 * 7 2 1 9 9 N 1.36934 * 119.99992 * 339.27501 * 7 2 1 10 10 C 1.46507 * 119.99983 * 321.59797 * 9 7 2 11 11 C 1.52997 * 109.47135 * 269.99659 * 10 9 7 12 12 C 1.52996 * 109.47491 * 179.97438 * 11 10 9 13 13 O 1.42898 * 109.47570 * 180.02562 * 12 11 10 14 14 C 1.46493 * 120.00198 * 141.59287 * 9 7 2 15 15 C 1.54272 * 110.03022 * 62.55160 * 14 9 7 16 16 C 1.54963 * 104.16292 * 217.13754 * 15 14 9 17 17 C 1.54891 * 102.77391 * 37.88635 * 16 15 14 18 18 C 1.53870 * 110.03465 * 305.33693 * 14 9 7 19 19 H 0.97006 * 119.99846 * 355.02840 * 1 2 3 20 20 H 1.09002 * 109.47191 * 29.99694 * 10 9 7 21 21 H 1.08998 * 109.47154 * 149.99723 * 10 9 7 22 22 H 1.08996 * 109.47729 * 300.00299 * 11 10 9 23 23 H 1.09011 * 109.46718 * 59.99965 * 11 10 9 24 24 H 1.09005 * 109.47016 * 300.00766 * 12 11 10 25 25 H 1.09004 * 109.46544 * 60.00442 * 12 11 10 26 26 H 0.96704 * 114.00204 * 180.02562 * 13 12 11 27 27 H 1.08997 * 110.02122 * 183.94088 * 14 9 7 28 28 H 1.09005 * 110.48444 * 335.78674 * 15 14 9 29 29 H 1.09000 * 110.48875 * 98.42735 * 15 14 9 30 30 H 1.09002 * 110.72173 * 279.57436 * 16 15 14 31 31 H 1.08995 * 110.92652 * 156.29458 * 16 15 14 32 32 H 1.09003 * 110.48554 * 203.40557 * 17 16 15 33 33 H 1.09002 * 110.59872 * 80.82256 * 17 16 15 34 34 H 1.08998 * 110.03552 * 238.56616 * 18 14 9 35 35 H 1.08996 * 110.03248 * 359.97438 * 18 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0379 -1.2325 -0.3304 9 7 1.3921 -2.3495 0.4207 10 6 0.4697 -2.3101 1.5583 11 6 1.2459 -2.5586 2.8531 12 6 0.2828 -2.5169 4.0411 13 8 1.0078 -2.7484 5.2506 14 6 1.6529 -3.6162 -0.2673 15 6 3.1426 -3.9941 -0.1319 16 6 3.4984 -4.6295 -1.4997 17 6 2.7001 -3.7575 -2.5005 18 6 1.3715 -3.4663 -1.7726 19 1 -0.4850 0.8369 0.0728 20 1 -0.0095 -1.3322 1.6039 21 1 -0.2904 -3.0818 1.4366 22 1 1.7251 -3.5365 2.8076 23 1 2.0060 -1.7868 2.9748 24 1 -0.1961 -1.5388 4.0865 25 1 -0.4776 -3.2885 3.9196 26 1 0.4590 -2.7364 6.0467 27 1 1.0282 -4.4045 0.1527 28 1 3.7473 -3.1044 0.0441 29 1 3.2814 -4.7162 0.6727 30 1 3.1664 -5.6669 -1.5411 31 1 4.5684 -4.5598 -1.6948 32 1 2.5167 -4.3072 -3.4237 33 1 3.2320 -2.8293 -2.7096 34 1 0.6107 -4.1823 -2.0834 35 1 1.0404 -2.4511 -1.9912 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070714985.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:18 Heat of formation + Delta-G solvation = -70.317691 kcal Electronic energy + Delta-G solvation = -15035.129739 eV Core-core repulsion = 12646.048947 eV Total energy + Delta-G solvation = -2389.080792 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.42554 -37.94838 -36.18102 -33.53515 -31.89160 -29.31282 -28.22181 -26.91061 -24.10866 -22.07887 -21.29422 -20.73034 -18.54398 -17.79392 -17.08918 -16.54424 -16.30679 -15.85492 -15.26548 -14.70393 -14.27784 -14.07146 -13.79382 -13.45101 -13.03240 -12.77642 -12.44581 -12.25585 -12.12454 -11.96248 -11.76415 -11.71623 -11.68493 -11.39940 -11.22500 -11.13907 -10.83272 -10.43315 -8.50603 -7.73400 -5.41204 1.44859 1.47414 1.53326 2.52972 3.21353 3.41083 3.81153 4.00352 4.06200 4.17384 4.29621 4.43050 4.64870 4.69386 4.75959 4.78330 4.91632 4.95853 4.99958 5.07995 5.12122 5.23121 5.25244 5.34732 5.47062 5.60339 5.63090 5.69688 5.76329 5.87673 6.53867 6.94770 7.24084 7.94190 8.46201 9.17559 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.017393 B = 0.014095 C = 0.008972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.427480 B = 1986.077965 C = 3119.949123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.035 4.035 3 Si 0.943 3.057 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.284 1.284 7 C -0.241 4.241 8 H 0.050 0.950 9 N -0.592 5.592 10 C 0.152 3.848 11 C -0.121 4.121 12 C 0.086 3.914 13 O -0.594 6.594 14 C 0.160 3.840 15 C -0.131 4.131 16 C -0.111 4.111 17 C -0.113 4.113 18 C -0.128 4.128 19 H 0.249 0.751 20 H 0.064 0.936 21 H 0.031 0.969 22 H 0.049 0.951 23 H 0.034 0.966 24 H 0.042 0.958 25 H 0.060 0.940 26 H 0.394 0.606 27 H 0.055 0.945 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.044 0.956 34 H 0.056 0.944 35 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.526 -7.736 2.547 8.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.232 4.232 3 Si 0.771 3.229 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.210 1.210 7 C -0.372 4.372 8 H 0.068 0.932 9 N -0.312 5.312 10 C 0.026 3.974 11 C -0.161 4.161 12 C 0.008 3.992 13 O -0.402 6.402 14 C 0.054 3.946 15 C -0.170 4.170 16 C -0.148 4.148 17 C -0.151 4.151 18 C -0.167 4.167 19 H 0.058 0.942 20 H 0.082 0.918 21 H 0.050 0.950 22 H 0.068 0.932 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.244 0.756 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.882 -7.640 2.045 8.130 hybrid contribution -0.249 1.332 0.436 1.424 sum 1.634 -6.308 2.480 6.972 Atomic orbital electron populations 1.70169 1.06427 1.26128 1.53175 1.25705 0.95554 1.00948 1.00961 0.85735 0.78168 0.80822 0.78133 1.20308 1.21878 1.21047 1.18942 0.93193 0.86624 1.38451 0.93220 1.44089 1.51886 1.03924 1.31277 1.20695 0.91012 1.00905 0.84828 1.21985 0.98909 1.00258 0.94977 1.22072 0.93818 0.99411 0.83937 1.86450 1.40754 1.95485 1.17523 1.21300 0.94497 0.87366 0.91484 1.22754 0.97652 0.99197 0.97424 1.22403 0.99601 0.98976 0.93867 1.22220 0.95709 0.98986 0.98203 1.22449 0.97381 1.00193 0.96719 0.94210 0.91791 0.95035 0.93233 0.94757 0.93977 0.92194 0.75634 0.92640 0.93574 0.92219 0.90215 0.91226 0.90712 0.93723 0.92559 0.94143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.90 11.48 21.65 0.25 -52.65 16 2 C -0.03 -1.92 4.96 84.86 0.42 -1.50 16 3 Si 0.94 45.07 29.61 68.60 2.03 47.10 16 4 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 7 C -0.24 -13.08 7.75 84.03 0.65 -12.43 16 8 H 0.05 2.75 6.94 -2.91 -0.02 2.73 16 9 N -0.59 -29.13 2.38 -674.02 -1.60 -30.73 16 10 C 0.15 7.09 5.28 86.38 0.46 7.55 16 11 C -0.12 -5.02 5.91 30.59 0.18 -4.84 16 12 C 0.09 2.86 7.05 71.98 0.51 3.36 16 13 O -0.59 -18.37 13.66 -148.98 -2.04 -20.41 16 14 C 0.16 6.66 3.42 45.72 0.16 6.82 16 15 C -0.13 -4.80 6.43 31.70 0.20 -4.60 16 16 C -0.11 -3.29 6.91 31.91 0.22 -3.07 16 17 C -0.11 -3.79 6.83 31.67 0.22 -3.57 16 18 C -0.13 -5.16 6.24 31.32 0.20 -4.96 16 19 H 0.25 14.00 8.32 -92.70 -0.77 13.23 16 20 H 0.06 3.40 5.55 -2.39 -0.01 3.39 16 21 H 0.03 1.38 7.90 -2.39 -0.02 1.36 16 22 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 23 H 0.03 1.59 8.14 -2.38 -0.02 1.57 16 24 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 25 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 26 H 0.39 7.52 9.12 -74.05 -0.68 6.84 16 27 H 0.06 2.18 7.81 -2.39 -0.02 2.16 16 28 H 0.05 1.93 6.64 -2.38 -0.02 1.92 16 29 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.04 1.99 7.17 -2.39 -0.02 1.97 16 Total: -1.00 -62.65 280.10 2.23 -60.42 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.38 Total: 13.50 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: 3.21 Total: -17.24 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -1.36 Total: -83.38 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -2.04 Total: -20.41 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -62.65 2.23 -60.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070714985.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.893 kcal (2) G-P(sol) polarization free energy of solvation -62.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds