Wall clock time and date at job start Sun Mar 29 2020 22:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47355 * 180.02562 * 10 9 7 12 12 N 1.46893 * 109.47186 * 179.97438 * 11 10 9 13 13 C 1.46903 * 111.00119 * 179.97438 * 12 11 10 14 14 H 1.08999 * 109.51600 * 34.87675 * 13 12 11 15 15 C 1.53178 * 109.51981 * 154.99879 * 13 12 11 16 16 C 1.53179 * 109.03389 * 176.89126 * 15 13 12 17 17 C 1.53100 * 109.16280 * 303.02149 * 16 15 13 18 18 O 1.42899 * 109.41312 * 57.60917 * 17 16 15 19 19 C 1.42905 * 114.09630 * 298.84037 * 18 17 16 20 20 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 22 22 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 23 23 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 24 24 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 25 25 H 1.09002 * 109.46807 * 299.99709 * 11 10 9 26 26 H 1.08992 * 109.47112 * 59.99408 * 11 10 9 27 27 H 1.00899 * 111.00123 * 303.95270 * 12 11 10 28 28 H 1.08997 * 109.54678 * 296.75714 * 15 13 12 29 29 H 1.08999 * 109.54370 * 56.93613 * 15 13 12 30 30 H 1.08998 * 109.52559 * 62.92244 * 16 15 13 31 31 H 1.09002 * 109.52190 * 183.05094 * 16 15 13 32 32 H 1.08994 * 109.47605 * 177.59395 * 17 16 15 33 33 H 1.09003 * 109.47696 * 297.61130 * 17 16 15 34 34 H 1.09002 * 109.48067 * 301.17669 * 19 18 17 35 35 H 1.09003 * 109.47885 * 181.14280 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4348 -6.1037 -0.0018 13 6 1.7345 -7.3950 -0.0018 14 1 0.8198 -7.3132 -0.5889 15 6 2.6405 -8.4686 -0.6126 16 6 1.9307 -9.8238 -0.5363 17 6 1.5760 -10.1239 0.9226 18 8 0.7581 -9.0719 1.4386 19 6 1.3875 -7.7889 1.4362 20 1 -0.4850 0.8401 0.0004 21 1 0.6247 -2.5571 0.8897 22 1 0.6240 -2.5568 -0.8903 23 1 2.8719 -3.6044 -0.8906 24 1 2.8719 -3.6044 0.8894 25 1 0.8533 -5.0451 0.8886 26 1 0.8539 -5.0446 -0.8913 27 1 3.0696 -6.0362 -0.7832 28 1 2.8460 -8.2228 -1.6544 29 1 3.5772 -8.5143 -0.0572 30 1 1.0194 -9.7919 -1.1334 31 1 2.5902 -10.6025 -0.9194 32 1 1.0328 -11.0672 0.9778 33 1 2.4905 -10.1960 1.5115 34 1 2.2994 -7.8303 2.0320 35 1 0.7083 -7.0501 1.8617 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071012923.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:46 Heat of formation + Delta-G solvation = -72.961702 kcal Electronic energy + Delta-G solvation = -14099.178839 eV Core-core repulsion = 11709.983395 eV Total energy + Delta-G solvation = -2389.195445 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.49853 -36.29741 -33.91657 -32.83738 -31.37581 -29.00493 -25.92117 -25.16918 -23.19508 -21.78675 -20.55462 -19.79225 -16.43217 -16.27723 -16.24515 -15.33144 -14.93542 -14.66757 -14.36753 -14.09527 -13.19752 -12.98850 -12.72166 -12.35460 -12.01025 -11.72540 -11.34565 -11.27763 -10.94632 -10.80185 -10.57628 -10.48352 -10.32890 -9.72859 -9.58939 -9.31328 -9.04524 -8.32267 -8.22086 -5.97428 -3.99676 3.35266 3.39331 3.42055 3.74763 4.34388 4.49365 4.63393 4.69224 4.80647 5.02621 5.16477 5.31706 5.38208 5.46697 5.63325 5.64738 5.73859 5.79193 5.81546 5.92067 6.02120 6.12488 6.33046 6.71538 6.73434 7.08518 7.14564 7.36960 7.59002 7.70303 7.85349 8.02830 8.45934 9.07311 9.64155 11.14012 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.081401 B = 0.004530 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 343.892531 B = 6179.374405 C = 6324.517054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.058 3.942 12 N -0.685 5.685 13 C 0.052 3.948 14 H 0.050 0.950 15 C -0.125 4.125 16 C -0.153 4.153 17 C 0.059 3.941 18 O -0.385 6.385 19 C 0.071 3.929 20 H 0.261 0.739 21 H 0.016 0.984 22 H 0.013 0.987 23 H 0.045 0.955 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.025 0.975 27 H 0.341 0.659 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.060 -18.444 -0.494 18.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.213 1.213 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.071 4.071 12 N -0.318 5.318 13 C -0.058 4.058 14 H 0.068 0.932 15 C -0.163 4.163 16 C -0.191 4.191 17 C -0.018 4.018 18 O -0.303 6.303 19 C -0.006 4.006 20 H 0.070 0.930 21 H 0.035 0.965 22 H 0.032 0.968 23 H 0.063 0.937 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.044 0.956 27 H 0.159 0.841 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.790 -18.350 0.262 18.739 hybrid contribution 0.374 1.016 -1.120 1.558 sum 4.164 -17.333 -0.857 17.847 Atomic orbital electron populations 1.69960 1.06068 1.26671 1.50905 1.25033 0.94847 0.99252 0.95365 0.86650 0.79567 0.83120 0.78612 1.21307 1.20211 1.20287 1.21220 0.93012 0.91072 1.50520 0.92726 1.19066 0.94017 0.91361 0.97143 1.21628 0.99190 0.92949 1.00722 1.22209 0.94089 0.90761 1.00004 1.60491 1.20363 1.00890 1.50008 1.22124 0.96449 0.90027 0.97229 0.93182 1.21789 0.99032 0.94259 1.01198 1.22185 1.01304 0.97543 0.98110 1.22560 0.95325 0.90867 0.93050 1.87944 1.41898 1.16748 1.83699 1.22582 0.98439 0.84088 0.95504 0.92976 0.96548 0.96814 0.93664 0.92520 0.91421 0.95628 0.84107 0.91591 0.90910 0.91117 0.90839 0.89125 0.93198 0.92384 0.88725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.29 55.43 0.74 -26.61 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 10 C -0.11 -2.24 5.41 -26.73 -0.14 -2.38 16 11 C 0.06 1.01 5.49 -3.83 -0.02 0.99 16 12 N -0.68 -10.02 6.31 -106.59 -0.67 -10.70 16 13 C 0.05 0.67 2.69 -67.58 -0.18 0.49 16 14 H 0.05 0.70 7.80 -51.93 -0.41 0.30 16 15 C -0.12 -1.29 5.29 -26.55 -0.14 -1.43 16 16 C -0.15 -1.37 6.14 -26.59 -0.16 -1.53 16 17 C 0.06 0.57 6.84 37.21 0.25 0.82 16 18 O -0.39 -5.02 10.77 -35.23 -0.38 -5.39 16 19 C 0.07 0.93 6.34 37.20 0.24 1.17 16 20 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 21 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 22 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 23 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.07 1.21 7.51 -51.93 -0.39 0.82 16 26 H 0.03 0.45 8.06 -51.93 -0.42 0.04 16 27 H 0.34 4.62 8.36 -39.29 -0.33 4.30 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.09 1.31 7.54 -51.93 -0.39 0.92 16 LS Contribution 283.85 15.07 4.28 4.28 Total: -1.00 -30.52 283.85 -7.89 -38.42 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -6.13 Total: -1.69 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -0.71 Total: -15.21 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.06 Total: -37.30 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.38 Total: -5.39 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.52 -7.89 -38.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071012923.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.546 kcal (2) G-P(sol) polarization free energy of solvation -30.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds