Wall clock time and date at job start Sun Mar 29 2020 22:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47355 * 180.02562 * 10 9 7 12 12 N 1.46893 * 109.47186 * 179.97438 * 11 10 9 13 13 C 1.46903 * 111.00119 * 179.97438 * 12 11 10 14 14 H 1.08999 * 109.51600 * 34.87675 * 13 12 11 15 15 C 1.53178 * 109.51981 * 154.99879 * 13 12 11 16 16 C 1.53179 * 109.03389 * 176.89126 * 15 13 12 17 17 C 1.53100 * 109.16280 * 303.02149 * 16 15 13 18 18 O 1.42899 * 109.41312 * 57.60917 * 17 16 15 19 19 C 1.42905 * 114.09630 * 298.84037 * 18 17 16 20 20 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 22 22 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 23 23 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 24 24 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 25 25 H 1.09002 * 109.46807 * 299.99709 * 11 10 9 26 26 H 1.08992 * 109.47112 * 59.99408 * 11 10 9 27 27 H 1.00899 * 111.00123 * 303.95270 * 12 11 10 28 28 H 1.08997 * 109.54678 * 296.75714 * 15 13 12 29 29 H 1.08999 * 109.54370 * 56.93613 * 15 13 12 30 30 H 1.08998 * 109.52559 * 62.92244 * 16 15 13 31 31 H 1.09002 * 109.52190 * 183.05094 * 16 15 13 32 32 H 1.08994 * 109.47605 * 177.59395 * 17 16 15 33 33 H 1.09003 * 109.47696 * 297.61130 * 17 16 15 34 34 H 1.09002 * 109.48067 * 301.17669 * 19 18 17 35 35 H 1.09003 * 109.47885 * 181.14280 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4348 -6.1037 -0.0018 13 6 1.7345 -7.3950 -0.0018 14 1 0.8198 -7.3132 -0.5889 15 6 2.6405 -8.4686 -0.6126 16 6 1.9307 -9.8238 -0.5363 17 6 1.5760 -10.1239 0.9226 18 8 0.7581 -9.0719 1.4386 19 6 1.3875 -7.7889 1.4362 20 1 -0.4850 0.8401 0.0004 21 1 0.6247 -2.5571 0.8897 22 1 0.6240 -2.5568 -0.8903 23 1 2.8719 -3.6044 -0.8906 24 1 2.8719 -3.6044 0.8894 25 1 0.8533 -5.0451 0.8886 26 1 0.8539 -5.0446 -0.8913 27 1 3.0696 -6.0362 -0.7832 28 1 2.8460 -8.2228 -1.6544 29 1 3.5772 -8.5143 -0.0572 30 1 1.0194 -9.7919 -1.1334 31 1 2.5902 -10.6025 -0.9194 32 1 1.0328 -11.0672 0.9778 33 1 2.4905 -10.1960 1.5115 34 1 2.2994 -7.8303 2.0320 35 1 0.7083 -7.0501 1.8617 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071012923.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:46 Heat of formation + Delta-G solvation = -93.746175 kcal Electronic energy + Delta-G solvation = -14100.080122 eV Core-core repulsion = 11709.983395 eV Total energy + Delta-G solvation = -2390.096727 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.44476 -37.61265 -35.64826 -34.17401 -32.90725 -30.37335 -27.69232 -26.08392 -24.70863 -23.05590 -22.06317 -20.98880 -18.47659 -17.46828 -17.18982 -16.55522 -16.39600 -15.91879 -15.72337 -15.51551 -14.40267 -14.23021 -14.14143 -13.59566 -13.53074 -13.35064 -12.85907 -12.58044 -12.47169 -12.29159 -12.08493 -11.83173 -11.55452 -11.36826 -11.25013 -11.05724 -10.55386 -10.53837 -9.44914 -8.20074 -6.31549 1.40352 1.43809 1.51765 2.41239 2.79621 3.12988 3.28788 3.72375 3.87540 3.98562 4.13150 4.21875 4.26344 4.38811 4.50189 4.66181 4.70534 4.76264 4.82508 4.93363 4.97519 5.01110 5.08527 5.12989 5.24005 5.29357 5.51226 5.73717 5.85028 5.92054 6.24449 6.31336 6.43815 6.85314 7.37829 8.91788 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.081401 B = 0.004530 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 343.892531 B = 6179.374405 C = 6324.517054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.283 1.283 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.024 3.976 10 C -0.091 4.091 11 C 0.071 3.929 12 N -0.681 5.681 13 C 0.053 3.947 14 H 0.037 0.963 15 C -0.121 4.121 16 C -0.148 4.148 17 C 0.050 3.950 18 O -0.405 6.405 19 C 0.073 3.927 20 H 0.264 0.736 21 H -0.010 1.010 22 H -0.010 1.010 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.021 0.979 27 H 0.350 0.650 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.692 -19.214 -0.863 20.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.208 1.208 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.079 0.921 9 C -0.014 4.014 10 C -0.129 4.129 11 C -0.058 4.058 12 N -0.314 5.314 13 C -0.057 4.057 14 H 0.055 0.945 15 C -0.159 4.159 16 C -0.186 4.186 17 C -0.026 4.026 18 O -0.323 6.323 19 C -0.004 4.004 20 H 0.072 0.928 21 H 0.009 0.991 22 H 0.008 0.992 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.040 0.960 27 H 0.169 0.831 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.118 0.882 32 H 0.127 0.873 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.439 -19.146 -0.112 19.904 hybrid contribution -0.165 1.187 -0.997 1.559 sum 5.274 -17.959 -1.109 18.750 Atomic orbital electron populations 1.70099 1.07879 1.27866 1.51656 1.26017 0.95782 1.03478 0.94657 0.85473 0.78248 0.77920 0.79245 1.20814 1.19130 1.19067 1.21677 0.93590 0.92357 1.50639 0.92098 1.18981 0.94468 0.93231 0.94704 1.21371 0.97990 0.92661 1.00923 1.21898 0.93994 0.90380 0.99519 1.60389 1.19751 1.00755 1.50531 1.22152 0.96511 0.89846 0.97239 0.94476 1.21780 0.98645 0.93936 1.01494 1.22171 1.01462 0.97401 0.97597 1.22841 0.95756 0.90497 0.93536 1.87917 1.43075 1.17128 1.84203 1.22474 0.98091 0.84295 0.95557 0.92758 0.99120 0.99176 0.92873 0.92679 0.92185 0.96040 0.83115 0.90690 0.90290 0.91685 0.88201 0.87287 0.92179 0.92044 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.92 13.29 21.45 0.28 -57.64 16 2 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 3 Si 0.97 44.76 29.54 68.60 2.03 46.78 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.54 -31.66 9.11 25.60 0.23 -31.43 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 9 C 0.02 1.29 4.97 29.85 0.15 1.44 16 10 C -0.09 -3.84 5.41 30.59 0.17 -3.67 16 11 C 0.07 2.51 5.49 86.30 0.47 2.98 16 12 N -0.68 -19.24 6.31 -491.13 -3.10 -22.34 16 13 C 0.05 1.31 2.69 45.00 0.12 1.43 16 14 H 0.04 1.03 7.80 -2.39 -0.02 1.01 16 15 C -0.12 -2.20 5.29 30.71 0.16 -2.04 16 16 C -0.15 -2.26 6.14 30.69 0.19 -2.07 16 17 C 0.05 0.85 6.84 72.02 0.49 1.34 16 18 O -0.40 -10.17 10.77 -148.98 -1.60 -11.77 16 19 C 0.07 1.89 6.34 72.01 0.46 2.34 16 20 H 0.26 15.34 8.31 -92.71 -0.77 14.56 16 21 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 22 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 23 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.06 2.20 7.51 -2.39 -0.02 2.18 16 26 H 0.02 0.77 8.06 -2.39 -0.02 0.75 16 27 H 0.35 8.88 8.36 -89.69 -0.75 8.13 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.08 2.22 7.54 -2.39 -0.02 2.20 16 Total: -1.00 -65.42 283.85 0.80 -64.62 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 0.29 Total: 9.66 kcal Atomic # 6 Polarization: -32.22 SS G_CDS: 2.90 Total: -29.32 kcal Atomic # 7 Polarization: -77.16 SS G_CDS: -2.81 Total: -79.98 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -1.60 Total: -11.77 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -65.42 0.80 -64.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071012923.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.125 kcal (2) G-P(sol) polarization free energy of solvation -65.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds