Wall clock time and date at job start Sun Mar 29 2020 21:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47115 * 2 1 4 4 C 1.52999 * 109.46719 * 119.99642 * 2 1 3 5 5 N 1.46502 * 109.47327 * 294.99580 * 4 2 1 6 6 C 1.36935 * 119.99575 * 90.00334 * 5 4 2 7 7 H 1.08000 * 119.99955 * 215.40168 * 6 5 4 8 8 C 1.38810 * 120.00149 * 35.40353 * 6 5 4 9 9 N 1.31617 * 120.00246 * 21.31496 * 8 6 5 10 10 Si 1.86799 * 120.00048 * 201.31919 * 8 6 5 11 11 H 1.48497 * 109.47307 * 180.02562 * 10 8 6 12 12 H 1.48506 * 109.46869 * 299.99705 * 10 8 6 13 13 H 1.48497 * 109.47295 * 59.99468 * 10 8 6 14 14 C 1.46494 * 120.00328 * 270.00488 * 5 4 2 15 15 C 1.52996 * 117.50108 * 192.69916 * 14 5 4 16 16 C 1.53002 * 60.00155 * 252.50641 * 15 14 5 17 17 C 1.50701 * 109.47132 * 239.99699 * 2 1 3 18 18 O 1.20828 * 119.99565 * 240.00409 * 17 2 1 19 19 O 1.34226 * 120.00200 * 60.00081 * 17 2 1 20 20 H 1.08997 * 109.47455 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.46998 * 300.00370 * 1 2 3 22 22 H 1.08995 * 109.47176 * 59.99953 * 1 2 3 23 23 H 1.09008 * 109.46990 * 175.00321 * 4 2 1 24 24 H 1.08990 * 109.47387 * 55.00441 * 4 2 1 25 25 H 0.96996 * 120.00702 * 179.86725 * 9 8 6 26 26 H 1.09007 * 115.55095 * 338.40395 * 14 5 4 27 27 H 1.09003 * 117.49923 * 359.97438 * 15 14 5 28 28 H 1.09003 * 117.50057 * 145.01654 * 15 14 5 29 29 H 1.08992 * 117.50000 * 252.50780 * 16 15 14 30 30 H 1.08997 * 117.51251 * 107.47369 * 16 15 14 31 31 H 0.96695 * 116.99987 * 179.97438 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6524 0.0355 2.4424 6 6 0.4579 -0.2240 3.0597 7 1 -0.1043 0.5816 3.5084 8 6 -0.0303 -1.5225 3.1088 9 7 0.7906 -2.5403 2.9595 10 14 -1.8525 -1.8253 3.3866 11 1 -2.1154 -3.2868 3.3977 12 1 -2.2586 -1.2399 4.6896 13 1 -2.6322 -1.1899 2.2940 14 6 2.5426 1.0698 2.9751 15 6 2.2364 1.6149 4.3714 16 6 1.9704 2.4795 3.1375 17 6 2.0323 -0.7105 -1.2304 18 8 2.7269 -1.6929 -1.1194 19 8 1.7081 -0.2520 -2.4496 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 3.1263 -0.7994 1.2057 24 1 1.6053 -1.7197 1.2953 25 1 0.4499 -3.4477 2.9957 26 1 3.5904 0.9821 2.6873 27 1 1.3723 1.2042 4.8937 28 1 3.0827 1.8857 5.0028 29 1 2.6416 3.3190 2.9570 30 1 0.9316 2.6373 2.8477 31 1 2.0541 -0.7408 -3.2087 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071738062.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:31 Heat of formation + Delta-G solvation = -52.191533 kcal Electronic energy + Delta-G solvation = -14895.120126 eV Core-core repulsion = 12370.992249 eV Total energy + Delta-G solvation = -2524.127877 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.79503 -37.21703 -35.67213 -34.33223 -32.23380 -29.86279 -26.07045 -24.06515 -23.05868 -21.38076 -20.11221 -19.41097 -17.56971 -16.40355 -15.81703 -15.45013 -15.11820 -14.34663 -14.00477 -13.26056 -12.99317 -12.42825 -12.14118 -11.58664 -11.27455 -11.07493 -11.00358 -10.93315 -10.75979 -10.61157 -10.34259 -10.04780 -9.91856 -9.76114 -9.54269 -9.28197 -8.43831 -6.59112 -5.84025 -3.42851 2.77662 3.31798 3.39606 3.40328 3.58803 4.40474 4.92719 5.24498 5.31568 5.66845 5.78737 5.89309 5.93685 6.11203 6.19355 6.27641 6.46231 6.58884 6.70480 6.72747 6.84992 6.94584 6.97294 7.15116 7.17144 7.68595 7.78032 8.38441 8.45951 9.09955 9.73341 10.28724 11.14137 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.021892 B = 0.013985 C = 0.010189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.722989 B = 2001.661889 C = 2747.513942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.098 4.098 3 H 0.091 0.909 4 C 0.159 3.841 5 N -0.546 5.546 6 C -0.263 4.263 7 H 0.065 0.935 8 C 0.017 3.983 9 N -0.879 5.879 10 Si 0.893 3.107 11 H -0.289 1.289 12 H -0.280 1.280 13 H -0.279 1.279 14 C 0.124 3.876 15 C -0.195 4.195 16 C -0.228 4.228 17 C 0.480 3.520 18 O -0.518 6.518 19 O -0.525 6.525 20 H 0.050 0.950 21 H 0.091 0.909 22 H 0.040 0.960 23 H 0.035 0.965 24 H 0.112 0.888 25 H 0.258 0.742 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.816 5.584 -5.699 8.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.120 4.120 3 H 0.109 0.891 4 C 0.032 3.968 5 N -0.261 5.261 6 C -0.392 4.392 7 H 0.083 0.917 8 C -0.184 4.184 9 N -0.520 5.520 10 Si 0.722 3.278 11 H -0.215 1.215 12 H -0.206 1.206 13 H -0.205 1.205 14 C 0.014 3.986 15 C -0.234 4.234 16 C -0.269 4.269 17 C 0.323 3.677 18 O -0.406 6.406 19 O -0.336 6.336 20 H 0.069 0.931 21 H 0.109 0.891 22 H 0.060 0.940 23 H 0.053 0.947 24 H 0.129 0.871 25 H 0.068 0.932 26 H 0.106 0.894 27 H 0.117 0.883 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 0.820 5.275 -5.303 7.524 hybrid contribution -0.690 -0.459 -0.380 0.912 sum 0.130 4.815 -5.683 7.450 Atomic orbital electron populations 1.21645 0.92193 1.02274 1.02328 1.22021 0.99026 1.00694 0.90262 0.89136 1.20934 0.96716 0.98033 0.81081 1.43372 1.18243 1.39132 1.25349 1.18846 0.95254 0.91405 1.33727 0.91726 1.25149 0.97943 0.95851 0.99438 1.69950 1.33264 0.98276 1.50554 0.86530 0.85694 0.77031 0.78584 1.21516 1.20603 1.20494 1.21164 0.92953 0.88532 0.95931 1.23056 1.03173 1.05313 0.91831 1.23382 1.01852 0.96529 1.05110 1.24336 0.76364 0.82641 0.84407 1.90674 1.36327 1.26423 1.87160 1.84633 1.72698 1.59142 1.17123 0.93109 0.89068 0.94044 0.94654 0.87093 0.93181 0.89447 0.88283 0.90815 0.90952 0.89646 0.74679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 8.68 37.16 0.32 -2.16 16 2 C -0.10 -1.93 3.03 -91.77 -0.28 -2.21 16 3 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 4 C 0.16 3.71 4.19 -4.04 -0.02 3.70 16 5 N -0.55 -12.95 2.68 -165.67 -0.44 -13.39 16 6 C -0.26 -6.69 6.11 -15.06 -0.09 -6.78 16 7 H 0.07 1.65 7.17 -52.49 -0.38 1.27 16 8 C 0.02 0.46 4.98 -17.43 -0.09 0.37 16 9 N -0.88 -24.69 11.31 55.49 0.63 -24.07 16 10 Si 0.89 20.75 29.60 -169.99 -5.03 15.72 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 14 C 0.12 2.58 6.61 -67.93 -0.45 2.13 16 15 C -0.19 -3.81 9.79 -26.73 -0.26 -4.07 16 16 C -0.23 -4.19 10.12 -26.73 -0.27 -4.46 16 17 C 0.48 8.98 7.63 36.01 0.27 9.25 16 18 O -0.52 -11.19 16.68 -18.75 -0.31 -11.50 16 19 O -0.52 -7.74 13.33 -39.25 -0.52 -8.26 16 20 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 21 H 0.09 1.92 6.35 -51.93 -0.33 1.59 16 22 H 0.04 0.70 8.11 -51.93 -0.42 0.28 16 23 H 0.04 0.83 7.86 -51.92 -0.41 0.42 16 24 H 0.11 2.98 5.35 -51.93 -0.28 2.71 16 25 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 26 H 0.09 1.71 8.10 -51.92 -0.42 1.29 16 27 H 0.10 2.13 6.85 -51.93 -0.36 1.78 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.09 1.65 8.12 -51.93 -0.42 1.23 16 31 H 0.40 3.94 9.10 45.56 0.41 4.35 16 LS Contribution 263.93 15.07 3.98 3.98 Total: -1.00 -29.11 263.93 -5.99 -35.10 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -3.42 Total: 6.65 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -0.86 Total: -4.23 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.18 Total: -37.46 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.84 Total: -19.76 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.11 -5.99 -35.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071738062.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.093 kcal (2) G-P(sol) polarization free energy of solvation -29.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds