Wall clock time and date at job start Sun Mar 29 2020 21:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47115 * 2 1 4 4 C 1.52999 * 109.46719 * 119.99642 * 2 1 3 5 5 N 1.46502 * 109.47327 * 294.99580 * 4 2 1 6 6 C 1.36935 * 119.99575 * 90.00334 * 5 4 2 7 7 H 1.08000 * 119.99955 * 215.40168 * 6 5 4 8 8 C 1.38810 * 120.00149 * 35.40353 * 6 5 4 9 9 N 1.31617 * 120.00246 * 21.31496 * 8 6 5 10 10 Si 1.86799 * 120.00048 * 201.31919 * 8 6 5 11 11 H 1.48497 * 109.47307 * 180.02562 * 10 8 6 12 12 H 1.48506 * 109.46869 * 299.99705 * 10 8 6 13 13 H 1.48497 * 109.47295 * 59.99468 * 10 8 6 14 14 C 1.46494 * 120.00328 * 270.00488 * 5 4 2 15 15 C 1.52996 * 117.50108 * 192.69916 * 14 5 4 16 16 C 1.53002 * 60.00155 * 252.50641 * 15 14 5 17 17 C 1.50701 * 109.47132 * 239.99699 * 2 1 3 18 18 O 1.20828 * 119.99565 * 240.00409 * 17 2 1 19 19 O 1.34226 * 120.00200 * 60.00081 * 17 2 1 20 20 H 1.08997 * 109.47455 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.46998 * 300.00370 * 1 2 3 22 22 H 1.08995 * 109.47176 * 59.99953 * 1 2 3 23 23 H 1.09008 * 109.46990 * 175.00321 * 4 2 1 24 24 H 1.08990 * 109.47387 * 55.00441 * 4 2 1 25 25 H 0.96996 * 120.00702 * 179.86725 * 9 8 6 26 26 H 1.09007 * 115.55095 * 338.40395 * 14 5 4 27 27 H 1.09003 * 117.49923 * 359.97438 * 15 14 5 28 28 H 1.09003 * 117.50057 * 145.01654 * 15 14 5 29 29 H 1.08992 * 117.50000 * 252.50780 * 16 15 14 30 30 H 1.08997 * 117.51251 * 107.47369 * 16 15 14 31 31 H 0.96695 * 116.99987 * 179.97438 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6524 0.0355 2.4424 6 6 0.4579 -0.2240 3.0597 7 1 -0.1043 0.5816 3.5084 8 6 -0.0303 -1.5225 3.1088 9 7 0.7906 -2.5403 2.9595 10 14 -1.8525 -1.8253 3.3866 11 1 -2.1154 -3.2868 3.3977 12 1 -2.2586 -1.2399 4.6896 13 1 -2.6322 -1.1899 2.2940 14 6 2.5426 1.0698 2.9751 15 6 2.2364 1.6149 4.3714 16 6 1.9704 2.4795 3.1375 17 6 2.0323 -0.7105 -1.2304 18 8 2.7269 -1.6929 -1.1194 19 8 1.7081 -0.2520 -2.4496 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 3.1263 -0.7994 1.2057 24 1 1.6053 -1.7197 1.2953 25 1 0.4499 -3.4477 2.9957 26 1 3.5904 0.9821 2.6873 27 1 1.3723 1.2042 4.8937 28 1 3.0827 1.8857 5.0028 29 1 2.6416 3.3190 2.9570 30 1 0.9316 2.6373 2.8477 31 1 2.0541 -0.7408 -3.2087 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071738062.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:31 Heat of formation + Delta-G solvation = -70.525824 kcal Electronic energy + Delta-G solvation = -14895.915161 eV Core-core repulsion = 12370.992249 eV Total energy + Delta-G solvation = -2524.922911 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.27966 -38.89699 -37.06268 -35.99167 -34.07738 -31.66395 -27.90226 -25.76328 -24.71195 -22.89983 -21.76619 -21.05746 -19.03449 -18.14685 -17.46200 -17.19267 -16.63071 -16.09802 -15.73692 -14.84629 -14.53507 -14.17719 -13.81599 -13.19672 -13.03781 -12.75686 -12.72032 -12.54729 -12.45587 -12.19307 -12.08542 -11.86681 -11.66863 -11.33383 -11.25848 -10.88196 -10.35995 -8.48838 -7.79075 -5.41841 1.29335 1.46446 1.49713 1.54862 2.19718 2.51905 3.19819 3.49279 3.57184 4.08998 4.19905 4.33864 4.41246 4.53057 4.60478 4.75312 4.98411 5.00419 5.10162 5.12976 5.18068 5.39470 5.55543 5.59647 5.63768 5.69493 5.84515 6.46509 7.08143 7.16500 7.85487 8.36611 9.14773 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.021892 B = 0.013985 C = 0.010189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.722989 B = 2001.661889 C = 2747.513942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.093 4.093 3 H 0.110 0.890 4 C 0.164 3.836 5 N -0.561 5.561 6 C -0.249 4.249 7 H 0.063 0.937 8 C -0.030 4.030 9 N -0.917 5.917 10 Si 0.943 3.057 11 H -0.299 1.299 12 H -0.276 1.276 13 H -0.270 1.270 14 C 0.094 3.906 15 C -0.196 4.196 16 C -0.197 4.197 17 C 0.491 3.509 18 O -0.553 6.553 19 O -0.508 6.508 20 H 0.029 0.971 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.024 0.976 24 H 0.075 0.925 25 H 0.250 0.750 26 H 0.099 0.901 27 H 0.074 0.926 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.645 7.574 -6.588 10.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.114 4.114 3 H 0.128 0.872 4 C 0.037 3.963 5 N -0.277 5.277 6 C -0.379 4.379 7 H 0.080 0.920 8 C -0.227 4.227 9 N -0.560 5.560 10 Si 0.771 3.229 11 H -0.225 1.225 12 H -0.202 1.202 13 H -0.195 1.195 14 C -0.014 4.014 15 C -0.235 4.235 16 C -0.237 4.237 17 C 0.335 3.665 18 O -0.444 6.444 19 O -0.321 6.321 20 H 0.048 0.952 21 H 0.093 0.907 22 H 0.091 0.909 23 H 0.042 0.958 24 H 0.093 0.907 25 H 0.060 0.940 26 H 0.117 0.883 27 H 0.092 0.908 28 H 0.117 0.883 29 H 0.124 0.876 30 H 0.094 0.906 31 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 0.643 7.313 -6.220 9.622 hybrid contribution -0.576 -0.994 -0.151 1.159 sum 0.067 6.319 -6.372 8.974 Atomic orbital electron populations 1.21523 0.91906 1.01043 1.02992 1.21723 0.99052 1.01114 0.89515 0.87199 1.20657 0.95719 0.96975 0.82917 1.43494 1.18441 1.39854 1.25953 1.18953 0.95751 0.91004 1.32177 0.91961 1.25723 1.00872 0.95793 1.00322 1.70099 1.34619 0.98204 1.53104 0.85719 0.82176 0.76219 0.78768 1.22514 1.20167 1.19498 1.21426 0.93370 0.89305 0.97296 1.23067 1.03132 1.05466 0.91804 1.23328 1.01781 0.95775 1.02837 1.23912 0.75567 0.81721 0.85326 1.90678 1.38012 1.27875 1.87839 1.84532 1.72042 1.58862 1.16669 0.95225 0.90694 0.90939 0.95761 0.90728 0.94027 0.88306 0.90792 0.88283 0.87632 0.90571 0.71703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.41 8.68 71.98 0.62 -3.79 16 2 C -0.09 -3.52 3.03 -11.54 -0.04 -3.56 16 3 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 4 C 0.16 7.73 4.19 86.38 0.36 8.09 16 5 N -0.56 -26.54 2.68 -678.04 -1.81 -28.35 16 6 C -0.25 -12.69 6.11 84.03 0.51 -12.18 16 7 H 0.06 3.17 7.17 -2.91 -0.02 3.15 16 8 C -0.03 -1.58 4.98 84.86 0.42 -1.16 16 9 N -0.92 -53.13 11.31 21.65 0.24 -52.88 16 10 Si 0.94 43.09 29.60 68.60 2.03 45.12 16 11 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 12 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 13 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 14 C 0.09 3.79 6.61 44.99 0.30 4.09 16 15 C -0.20 -7.29 9.79 30.59 0.30 -6.99 16 16 C -0.20 -6.65 10.12 30.60 0.31 -6.35 16 17 C 0.49 17.57 7.63 71.24 0.54 18.11 16 18 O -0.55 -23.68 16.68 21.96 0.37 -23.31 16 19 O -0.51 -13.32 13.33 -51.37 -0.68 -14.00 16 20 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 21 H 0.07 3.06 6.35 -2.38 -0.02 3.04 16 22 H 0.07 2.24 8.11 -2.39 -0.02 2.22 16 23 H 0.02 1.15 7.86 -2.38 -0.02 1.13 16 24 H 0.07 4.15 5.35 -2.39 -0.01 4.13 16 25 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 26 H 0.10 3.71 8.10 -2.38 -0.02 3.69 16 27 H 0.07 3.14 6.85 -2.39 -0.02 3.12 16 28 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 29 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 30 H 0.08 2.75 8.12 -2.39 -0.02 2.73 16 31 H 0.42 6.90 9.10 -74.06 -0.67 6.23 16 Total: -1.00 -63.12 263.93 3.94 -59.18 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.46 Total: 17.97 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 3.34 Total: -3.73 kcal Atomic # 7 Polarization: -79.67 SS G_CDS: -1.57 Total: -81.24 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -0.32 Total: -37.31 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -63.12 3.94 -59.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071738062.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.347 kcal (2) G-P(sol) polarization free energy of solvation -63.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds