Wall clock time and date at job start Sun Mar 29 2020 22:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42901 * 113.99741 * 2 1 4 4 C 1.52996 * 109.46893 * 180.02562 * 3 2 1 5 5 H 1.09005 * 110.88969 * 57.42341 * 4 3 2 6 6 C 1.55155 * 111.00532 * 181.35217 * 4 3 2 7 7 C 1.54327 * 102.94571 * 153.57522 * 6 4 3 8 8 N 1.47024 * 107.26774 * 337.80617 * 7 6 4 9 9 C 1.34780 * 125.64847 * 179.20685 * 8 7 6 10 10 O 1.21685 * 120.00536 * 179.69004 * 9 8 7 11 11 C 1.46381 * 119.99792 * 359.68549 * 9 8 7 12 12 H 1.08001 * 119.99713 * 0.02562 * 11 9 8 13 13 C 1.40045 * 119.99788 * 179.97438 * 11 9 8 14 14 N 1.30668 * 120.00262 * 0.02562 * 13 11 9 15 15 Si 1.86808 * 119.99569 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.46760 * 60.01033 * 15 13 11 17 17 H 1.48501 * 109.46649 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47451 * 300.00197 * 15 13 11 19 19 C 1.47426 * 108.70449 * 358.94057 * 8 7 6 20 20 H 1.09000 * 109.47153 * 60.00025 * 1 2 3 21 21 H 1.08996 * 109.46777 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46617 * 299.99826 * 1 2 3 23 23 H 1.09002 * 109.47114 * 60.00155 * 3 2 1 24 24 H 1.09002 * 109.47275 * 299.99923 * 3 2 1 25 25 H 1.08999 * 110.71965 * 271.93488 * 6 4 3 26 26 H 1.09000 * 110.72417 * 35.03508 * 6 4 3 27 27 H 1.08995 * 109.88184 * 218.39040 * 7 6 4 28 28 H 1.09002 * 109.88385 * 97.22047 * 7 6 4 29 29 H 0.97001 * 119.99763 * 179.97438 * 14 13 11 30 30 H 1.09002 * 110.36518 * 142.96440 * 19 8 7 31 31 H 1.08995 * 110.36673 * 265.17549 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8793 0.6075 -0.8591 6 6 4.2042 2.5843 0.0335 7 6 5.5676 2.2999 0.6983 8 7 5.4286 1.0516 1.4625 9 6 6.4039 0.4544 2.1757 10 8 6.1732 -0.5784 2.7764 11 6 7.7409 1.0481 2.2275 12 1 7.9456 1.9649 1.6946 13 6 8.7542 0.4279 2.9689 14 7 8.5064 -0.6811 3.6141 15 14 10.4602 1.1860 3.0356 16 1 10.3735 2.5496 3.6173 17 1 11.3440 0.3426 3.8798 18 1 11.0195 1.2682 1.6624 19 6 4.0439 0.5647 1.3248 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3632 0.5138 0.8900 23 1 1.6886 1.8464 0.8900 24 1 1.6886 1.8464 -0.8900 25 1 4.3408 2.9712 -0.9763 26 1 3.6164 3.2781 0.6345 27 1 5.8308 3.1178 1.3689 28 1 6.3356 2.1828 -0.0663 29 1 9.2084 -1.1108 4.1273 30 1 4.0286 -0.5236 1.2649 31 1 3.4365 0.9063 2.1629 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081062944.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:28 Heat of formation + Delta-G solvation = -86.641246 kcal Electronic energy + Delta-G solvation = -14292.754914 eV Core-core repulsion = 11767.133185 eV Total energy + Delta-G solvation = -2525.621729 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.80297 -37.40694 -35.57234 -32.47004 -31.31410 -28.75437 -27.17552 -26.11631 -24.48667 -22.04974 -20.11016 -19.06945 -16.80145 -16.24797 -15.90157 -15.50052 -15.26704 -14.42115 -13.99757 -13.54189 -13.14879 -12.82658 -12.14713 -11.98018 -11.84624 -11.38470 -11.21745 -11.05530 -10.86561 -10.80800 -10.48588 -10.29079 -10.25008 -10.13445 -9.60575 -8.81537 -7.59086 -7.11685 -6.15828 -4.60740 3.17932 3.22343 3.24519 3.78660 4.11780 4.59185 4.66089 4.95259 5.06790 5.14594 5.28460 5.32871 5.49339 5.55040 5.60892 5.71749 5.83642 5.95709 6.02517 6.13326 6.45683 6.61024 6.67898 6.74390 7.21399 7.45200 7.47982 8.14937 8.46612 9.05211 9.55699 10.62255 10.81317 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.061705 B = 0.006832 C = 0.006238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.664778 B = 4097.403781 C = 4487.714209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.075 3.925 4 C -0.104 4.104 5 H 0.087 0.913 6 C -0.124 4.124 7 C 0.122 3.878 8 N -0.648 5.648 9 C 0.570 3.430 10 O -0.576 6.576 11 C -0.539 4.539 12 H 0.069 0.931 13 C 0.087 3.913 14 N -0.769 5.769 15 Si 0.909 3.091 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.268 1.268 19 C 0.127 3.873 20 H 0.037 0.963 21 H 0.084 0.916 22 H 0.039 0.961 23 H 0.050 0.950 24 H 0.048 0.952 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.269 0.731 30 H 0.067 0.933 31 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.286 6.815 -7.633 14.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.002 4.002 4 C -0.123 4.123 5 H 0.105 0.895 6 C -0.162 4.162 7 C -0.003 4.003 8 N -0.388 5.388 9 C 0.377 3.623 10 O -0.458 6.458 11 C -0.576 4.576 12 H 0.087 0.913 13 C -0.133 4.133 14 N -0.397 5.397 15 Si 0.733 3.267 16 H -0.193 1.193 17 H -0.205 1.205 18 H -0.193 1.193 19 C 0.003 3.997 20 H 0.056 0.944 21 H 0.102 0.898 22 H 0.058 0.942 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.147 5.867 -7.108 13.707 hybrid contribution 0.560 0.736 -0.034 0.925 sum -9.586 6.603 -7.141 13.656 Atomic orbital electron populations 1.22711 0.81562 1.02579 0.99610 1.87953 1.19191 1.28111 1.95316 1.22496 0.93348 0.84504 0.99815 1.22370 0.92240 0.97473 1.00202 0.89487 1.22646 0.96905 0.95832 1.00855 1.21550 0.95210 0.88727 0.94768 1.48741 1.09932 1.25576 1.54584 1.18032 0.83358 0.83537 0.77374 1.90609 1.82160 1.25438 1.47637 1.20867 0.93486 1.10521 1.32754 0.91327 1.25734 0.99963 0.94036 0.93563 1.70017 1.33111 1.14354 1.22267 0.86422 0.81826 0.79598 0.78831 1.19272 1.20532 1.19260 1.21731 0.84870 0.99451 0.93664 0.94433 0.89794 0.94214 0.93176 0.93402 0.90838 0.91230 0.92828 0.92758 0.92029 0.91466 0.93937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.39 -5.67 10.56 -35.23 -0.37 -6.04 16 3 C 0.08 0.99 5.38 37.16 0.20 1.19 16 4 C -0.10 -1.64 3.33 -88.47 -0.29 -1.93 16 5 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 6 C -0.12 -1.76 6.42 -24.90 -0.16 -1.92 16 7 C 0.12 2.31 6.05 -3.06 -0.02 2.29 16 8 N -0.65 -15.73 3.33 -172.17 -0.57 -16.31 16 9 C 0.57 17.16 7.78 -12.98 -0.10 17.06 16 10 O -0.58 -19.65 15.28 5.20 0.08 -19.57 16 11 C -0.54 -15.72 9.06 -35.63 -0.32 -16.04 16 12 H 0.07 1.83 7.16 -52.49 -0.38 1.45 16 13 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 14 N -0.77 -23.63 11.83 55.55 0.66 -22.97 16 15 Si 0.91 20.48 29.56 -169.99 -5.02 15.45 16 16 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 19 C 0.13 2.66 6.23 -2.53 -0.02 2.65 16 20 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 21 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 22 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.05 0.62 8.10 -51.93 -0.42 0.20 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 0.88 8.04 -51.93 -0.42 0.46 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.27 7.48 8.29 -40.82 -0.34 7.15 16 30 H 0.07 1.57 8.04 -51.93 -0.42 1.15 16 31 H 0.04 0.88 8.01 -51.93 -0.42 0.46 16 LS Contribution 265.41 15.07 4.00 4.00 Total: -1.00 -35.72 265.41 -5.49 -41.21 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -4.56 Total: -2.89 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 0.30 Total: 7.12 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.08 Total: -39.28 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.29 Total: -25.61 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -35.72 -5.49 -41.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081062944.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.431 kcal (2) G-P(sol) polarization free energy of solvation -35.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds