Wall clock time and date at job start Sun Mar 29 2020 22:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42901 * 113.99741 * 2 1 4 4 C 1.52996 * 109.46893 * 180.02562 * 3 2 1 5 5 H 1.09005 * 110.88969 * 57.42341 * 4 3 2 6 6 C 1.55155 * 111.00532 * 181.35217 * 4 3 2 7 7 C 1.54327 * 102.94571 * 153.57522 * 6 4 3 8 8 N 1.47024 * 107.26774 * 337.80617 * 7 6 4 9 9 C 1.34780 * 125.64847 * 179.20685 * 8 7 6 10 10 O 1.21685 * 120.00536 * 179.69004 * 9 8 7 11 11 C 1.46381 * 119.99792 * 359.68549 * 9 8 7 12 12 H 1.08001 * 119.99713 * 0.02562 * 11 9 8 13 13 C 1.40045 * 119.99788 * 179.97438 * 11 9 8 14 14 N 1.30668 * 120.00262 * 0.02562 * 13 11 9 15 15 Si 1.86808 * 119.99569 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.46760 * 60.01033 * 15 13 11 17 17 H 1.48501 * 109.46649 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47451 * 300.00197 * 15 13 11 19 19 C 1.47426 * 108.70449 * 358.94057 * 8 7 6 20 20 H 1.09000 * 109.47153 * 60.00025 * 1 2 3 21 21 H 1.08996 * 109.46777 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46617 * 299.99826 * 1 2 3 23 23 H 1.09002 * 109.47114 * 60.00155 * 3 2 1 24 24 H 1.09002 * 109.47275 * 299.99923 * 3 2 1 25 25 H 1.08999 * 110.71965 * 271.93488 * 6 4 3 26 26 H 1.09000 * 110.72417 * 35.03508 * 6 4 3 27 27 H 1.08995 * 109.88184 * 218.39040 * 7 6 4 28 28 H 1.09002 * 109.88385 * 97.22047 * 7 6 4 29 29 H 0.97001 * 119.99763 * 179.97438 * 14 13 11 30 30 H 1.09002 * 110.36518 * 142.96440 * 19 8 7 31 31 H 1.08995 * 110.36673 * 265.17549 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8793 0.6075 -0.8591 6 6 4.2042 2.5843 0.0335 7 6 5.5676 2.2999 0.6983 8 7 5.4286 1.0516 1.4625 9 6 6.4039 0.4544 2.1757 10 8 6.1732 -0.5784 2.7764 11 6 7.7409 1.0481 2.2275 12 1 7.9456 1.9649 1.6946 13 6 8.7542 0.4279 2.9689 14 7 8.5064 -0.6811 3.6141 15 14 10.4602 1.1860 3.0356 16 1 10.3735 2.5496 3.6173 17 1 11.3440 0.3426 3.8798 18 1 11.0195 1.2682 1.6624 19 6 4.0439 0.5647 1.3248 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3632 0.5138 0.8900 23 1 1.6886 1.8464 0.8900 24 1 1.6886 1.8464 -0.8900 25 1 4.3408 2.9712 -0.9763 26 1 3.6164 3.2781 0.6345 27 1 5.8308 3.1178 1.3689 28 1 6.3356 2.1828 -0.0663 29 1 9.2084 -1.1108 4.1273 30 1 4.0286 -0.5236 1.2649 31 1 3.4365 0.9063 2.1629 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081062944.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:28 Heat of formation + Delta-G solvation = -113.783562 kcal Electronic energy + Delta-G solvation = -14293.931893 eV Core-core repulsion = 11767.133185 eV Total energy + Delta-G solvation = -2526.798708 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.37091 -38.78395 -37.44595 -34.67925 -32.94870 -30.20698 -28.92390 -27.45847 -25.93837 -23.61843 -21.51260 -20.98435 -18.62913 -17.66138 -17.51440 -16.93858 -16.45500 -16.16928 -15.49644 -15.28836 -14.71505 -14.33077 -13.75978 -13.57236 -13.27563 -12.91690 -12.89203 -12.65464 -12.52293 -12.35559 -12.06484 -11.97075 -11.73357 -11.55316 -10.94057 -10.56738 -9.91698 -9.11421 -8.31699 -6.88577 1.38537 1.42992 1.55098 2.22962 2.42318 2.76622 2.94674 3.54329 3.71465 3.78013 4.03195 4.36103 4.40419 4.45732 4.52595 4.59990 4.63834 4.77370 4.85161 4.88053 4.97892 5.02597 5.18699 5.29051 5.37441 5.64527 6.01664 6.30714 6.39136 6.83313 7.46455 8.42585 8.64662 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.061705 B = 0.006832 C = 0.006238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.664778 B = 4097.403781 C = 4487.714209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.425 6.425 3 C 0.079 3.921 4 C -0.091 4.091 5 H 0.080 0.920 6 C -0.104 4.104 7 C 0.110 3.890 8 N -0.658 5.658 9 C 0.546 3.454 10 O -0.637 6.637 11 C -0.565 4.565 12 H 0.089 0.911 13 C 0.025 3.975 14 N -0.824 5.824 15 Si 1.003 2.997 16 H -0.252 1.252 17 H -0.273 1.273 18 H -0.252 1.252 19 C 0.121 3.879 20 H 0.059 0.941 21 H 0.089 0.911 22 H 0.048 0.952 23 H 0.059 0.941 24 H 0.084 0.916 25 H 0.113 0.887 26 H 0.093 0.907 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.275 0.725 30 H 0.026 0.974 31 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.330 9.552 -9.238 16.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.344 6.344 3 C 0.002 3.998 4 C -0.111 4.111 5 H 0.099 0.901 6 C -0.142 4.142 7 C -0.013 4.013 8 N -0.396 5.396 9 C 0.353 3.647 10 O -0.525 6.525 11 C -0.601 4.601 12 H 0.108 0.892 13 C -0.189 4.189 14 N -0.454 5.454 15 Si 0.821 3.179 16 H -0.175 1.175 17 H -0.198 1.198 18 H -0.176 1.176 19 C -0.002 4.002 20 H 0.078 0.922 21 H 0.107 0.893 22 H 0.066 0.934 23 H 0.077 0.923 24 H 0.102 0.898 25 H 0.132 0.868 26 H 0.112 0.888 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.045 0.955 31 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -10.245 8.658 -8.762 16.022 hybrid contribution 0.476 -0.147 0.455 0.675 sum -9.769 8.510 -8.307 15.390 Atomic orbital electron populations 1.22912 0.79421 1.03556 1.01081 1.87907 1.21650 1.29249 1.95643 1.22513 0.90897 0.84425 1.01950 1.22305 0.94675 0.97871 0.96205 0.90129 1.22628 0.93556 0.95007 1.02985 1.21890 0.98660 0.86209 0.94515 1.48609 1.10186 1.27109 1.53650 1.18528 0.85138 0.83325 0.77667 1.90543 1.83566 1.27988 1.50365 1.21384 0.93772 1.11450 1.33509 0.89250 1.27098 1.05507 0.94149 0.92178 1.70206 1.35358 1.16513 1.23316 0.85009 0.74344 0.78871 0.79668 1.17537 1.19770 1.17615 1.21878 0.83683 0.97513 0.97157 0.92204 0.89276 0.93375 0.92283 0.89778 0.86821 0.88802 0.92518 0.92712 0.91469 0.95489 0.94024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.42 -11.88 10.56 -148.98 -1.57 -13.45 16 3 C 0.08 1.83 5.38 71.98 0.39 2.22 16 4 C -0.09 -2.72 3.33 -9.40 -0.03 -2.75 16 5 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 6 C -0.10 -2.56 6.42 31.78 0.20 -2.36 16 7 C 0.11 4.02 6.05 86.73 0.52 4.55 16 8 N -0.66 -32.75 3.33 -816.85 -2.72 -35.47 16 9 C 0.55 34.35 7.78 86.36 0.67 35.02 16 10 O -0.64 -46.21 15.28 -4.30 -0.07 -46.27 16 11 C -0.56 -33.53 9.06 24.83 0.23 -33.31 16 12 H 0.09 4.73 7.16 -2.91 -0.02 4.71 16 13 C 0.03 1.47 5.50 85.30 0.47 1.94 16 14 N -0.82 -52.52 11.83 21.83 0.26 -52.26 16 15 Si 1.00 41.85 29.56 68.60 2.03 43.87 16 16 H -0.25 -9.77 7.11 99.48 0.71 -9.07 16 17 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 18 H -0.25 -9.83 7.11 99.48 0.71 -9.13 16 19 C 0.12 5.25 6.23 86.86 0.54 5.79 16 20 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 21 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 22 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 24 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.09 1.92 8.04 -2.39 -0.02 1.90 16 27 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.28 15.82 8.29 -92.71 -0.77 15.05 16 30 H 0.03 1.34 8.04 -2.39 -0.02 1.32 16 31 H 0.04 1.77 8.01 -2.39 -0.02 1.75 16 Total: -1.00 -83.54 265.41 3.27 -80.27 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 1.10 Total: 10.47 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: 4.24 Total: 12.83 kcal Atomic # 7 Polarization: -85.27 SS G_CDS: -2.46 Total: -87.73 kcal Atomic # 8 Polarization: -58.09 SS G_CDS: -1.64 Total: -59.72 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.87 kcal Total: -83.54 3.27 -80.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081062944.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.510 kcal (2) G-P(sol) polarization free energy of solvation -83.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds