Wall clock time and date at job start Sun Mar 29 2020 22:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37097 * 119.99980 * 2 1 4 4 H 1.08003 * 119.99957 * 204.39674 * 3 2 1 5 5 C 1.38947 * 119.99981 * 24.40030 * 3 2 1 6 6 N 1.31420 * 119.99809 * 12.63867 * 5 3 2 7 7 Si 1.86800 * 120.00365 * 192.63555 * 5 3 2 8 8 H 1.48507 * 109.46902 * 89.99702 * 7 5 3 9 9 H 1.48491 * 109.47627 * 210.00115 * 7 5 3 10 10 H 1.48499 * 109.46780 * 330.00646 * 7 5 3 11 11 C 1.34776 * 120.00010 * 180.02562 * 2 1 3 12 12 O 1.21287 * 119.99796 * 179.97438 * 11 2 1 13 13 C 1.50700 * 120.00150 * 359.97438 * 11 2 1 14 14 C 1.52998 * 109.47114 * 180.02562 * 13 11 2 15 15 H 1.08999 * 110.27716 * 304.36508 * 14 13 11 16 16 C 1.55510 * 110.36508 * 182.25694 * 14 13 11 17 17 C 1.55303 * 100.69208 * 204.60919 * 16 14 13 18 18 C 1.54381 * 102.43578 * 34.13214 * 17 16 14 19 19 O 1.43231 * 107.59269 * 338.53896 * 18 17 16 20 20 H 1.09002 * 109.46674 * 265.85711 * 1 2 3 21 21 H 1.08989 * 109.47098 * 25.85614 * 1 2 3 22 22 H 1.09000 * 109.46960 * 145.86504 * 1 2 3 23 23 H 0.96996 * 119.99702 * 179.97438 * 6 5 3 24 24 H 1.09001 * 109.46596 * 60.00661 * 13 11 2 25 25 H 1.09003 * 109.47552 * 300.00822 * 13 11 2 26 26 H 1.09000 * 111.32791 * 86.74054 * 16 14 13 27 27 H 1.08997 * 111.14509 * 322.40966 * 16 14 13 28 28 H 1.08993 * 110.85031 * 275.83626 * 17 16 14 29 29 H 1.09000 * 110.84599 * 152.41866 * 17 16 14 30 30 H 1.09004 * 109.83152 * 98.05763 * 18 17 16 31 31 H 1.09005 * 109.82864 * 218.93285 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1582 1.2291 -0.3863 5 6 1.5488 2.3369 0.4971 6 7 0.4346 2.2490 1.1884 7 14 2.3237 4.0073 0.1830 8 1 1.7869 4.5721 -1.0812 9 1 2.0035 4.9212 1.3087 10 1 3.7968 3.8564 0.0714 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3854 -2.4723 -0.0005 14 6 2.3797 -3.6352 -0.0005 15 1 3.0638 -3.5473 -0.8445 16 6 1.6242 -4.9932 -0.0579 17 6 2.6771 -5.9362 0.5854 18 6 3.3486 -5.0204 1.6313 19 8 3.1126 -3.6645 1.2346 20 1 -0.3633 -0.0742 1.0250 21 1 -0.3633 0.9247 -0.4481 22 1 -0.3633 -0.8506 -0.5767 23 1 0.0148 3.0514 1.5357 24 1 0.7586 -2.5298 -0.8904 25 1 0.7590 -2.5303 0.8896 26 1 1.4115 -5.2854 -1.0863 27 1 0.7109 -4.9605 0.5362 28 1 3.4008 -6.2733 -0.1566 29 1 2.1937 -6.7860 1.0674 30 1 2.9122 -5.1994 2.6141 31 1 4.4203 -5.2172 1.6614 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082276673.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:36 Heat of formation + Delta-G solvation = -78.615287 kcal Electronic energy + Delta-G solvation = -14555.654201 eV Core-core repulsion = 12030.380504 eV Total energy + Delta-G solvation = -2525.273697 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.27897 -37.89371 -34.52615 -32.04527 -31.61125 -30.93903 -26.81899 -25.80164 -24.01938 -21.59021 -21.05393 -18.62233 -16.76612 -16.57981 -15.91056 -15.28541 -14.65850 -14.50098 -13.99382 -13.77936 -13.12203 -12.80357 -12.01967 -11.89058 -11.55227 -11.40086 -11.25009 -11.20317 -10.90622 -10.78639 -10.70566 -10.62486 -10.26490 -10.13903 -9.05729 -8.90667 -8.21321 -7.52913 -6.21621 -3.77259 3.23116 3.30851 3.37168 4.01885 4.21261 4.23227 4.63564 4.79436 5.00416 5.19477 5.22930 5.43914 5.47108 5.66414 5.76608 5.82935 5.91524 5.95360 6.10180 6.15166 6.21778 6.48821 6.55053 6.93593 7.27637 7.52439 7.66878 8.26714 8.61945 9.32073 9.55533 10.14100 10.83943 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.063766 B = 0.007247 C = 0.006885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.001925 B = 3862.770200 C = 4065.731287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.455 5.455 3 C -0.302 4.302 4 H 0.096 0.904 5 C 0.027 3.973 6 N -0.887 5.887 7 Si 0.925 3.075 8 H -0.279 1.279 9 H -0.285 1.285 10 H -0.270 1.270 11 C 0.453 3.547 12 O -0.577 6.577 13 C -0.132 4.132 14 C 0.104 3.896 15 H 0.073 0.927 16 C -0.154 4.154 17 C -0.155 4.155 18 C 0.047 3.953 19 O -0.358 6.358 20 H 0.049 0.951 21 H 0.073 0.927 22 H 0.023 0.977 23 H 0.265 0.735 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.175 -12.029 -2.108 12.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.175 5.175 3 C -0.430 4.430 4 H 0.114 0.886 5 C -0.175 4.175 6 N -0.527 5.527 7 Si 0.752 3.248 8 H -0.205 1.205 9 H -0.210 1.210 10 H -0.194 1.194 11 C 0.241 3.759 12 O -0.461 6.461 13 C -0.172 4.172 14 C 0.046 3.954 15 H 0.091 0.909 16 C -0.192 4.192 17 C -0.193 4.193 18 C -0.030 4.030 19 O -0.277 6.277 20 H 0.068 0.932 21 H 0.091 0.909 22 H 0.042 0.958 23 H 0.076 0.924 24 H 0.106 0.894 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.641 -11.686 -1.899 11.952 hybrid contribution -0.023 0.668 -0.076 0.673 sum -1.665 -11.018 -1.974 11.317 Atomic orbital electron populations 1.21431 0.81503 0.99636 1.00400 1.43589 1.05308 1.04814 1.63819 1.19639 1.00503 0.84278 1.38621 0.88596 1.25329 0.96755 1.00045 0.95362 1.70001 1.19454 1.29364 1.33834 0.85940 0.79645 0.81491 0.77706 1.20495 1.21040 1.19427 1.19975 0.88129 0.84718 0.83116 1.90529 1.13889 1.87018 1.54615 1.21746 0.98267 0.94065 1.03149 1.22762 0.91953 0.92661 0.88055 0.90874 1.23457 0.98832 0.95175 1.01751 1.23093 0.98552 0.98730 0.98923 1.23076 0.99619 0.82876 0.97452 1.88648 1.75818 1.23452 1.39759 0.93213 0.90870 0.95818 0.92444 0.89432 0.89737 0.90092 0.90361 0.90807 0.90515 0.91948 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.63 8.44 59.85 0.51 3.14 16 2 N -0.46 -12.25 3.01 -122.20 -0.37 -12.62 16 3 C -0.30 -8.83 9.24 -14.93 -0.14 -8.97 16 4 H 0.10 2.93 7.45 -52.48 -0.39 2.54 16 5 C 0.03 0.75 5.04 -17.47 -0.09 0.67 16 6 N -0.89 -24.61 10.83 55.50 0.60 -24.01 16 7 Si 0.93 21.52 29.57 -169.99 -5.03 16.49 16 8 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 11 C 0.45 11.66 7.53 -10.99 -0.08 11.58 16 12 O -0.58 -16.99 15.25 -6.29 -0.10 -17.09 16 13 C -0.13 -2.53 4.07 -27.88 -0.11 -2.64 16 14 C 0.10 1.82 2.93 -25.40 -0.07 1.75 16 15 H 0.07 1.37 8.00 -51.93 -0.42 0.95 16 16 C -0.15 -1.92 6.62 -24.18 -0.16 -2.08 16 17 C -0.16 -1.75 7.00 -24.79 -0.17 -1.92 16 18 C 0.05 0.67 7.80 37.88 0.30 0.97 16 19 O -0.36 -7.16 10.41 -47.07 -0.49 -7.65 16 20 H 0.05 1.18 7.83 -51.93 -0.41 0.77 16 21 H 0.07 1.77 6.80 -51.94 -0.35 1.42 16 22 H 0.02 0.44 6.61 -51.93 -0.34 0.10 16 23 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 24 H 0.09 1.41 7.41 -51.93 -0.38 1.03 16 25 H 0.08 1.56 8.11 -51.93 -0.42 1.14 16 26 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.08 0.91 8.07 -51.93 -0.42 0.49 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 258.34 15.07 3.89 3.89 Total: -1.00 -33.65 258.34 -5.90 -39.55 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -4.38 Total: -1.06 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -0.03 Total: 2.50 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.23 Total: -36.63 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.59 Total: -24.74 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -33.65 -5.90 -39.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082276673.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.069 kcal (2) G-P(sol) polarization free energy of solvation -33.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds