Wall clock time and date at job start Sun Mar 29 2020 22:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37097 * 119.99980 * 2 1 4 4 H 1.08003 * 119.99957 * 204.39674 * 3 2 1 5 5 C 1.38947 * 119.99981 * 24.40030 * 3 2 1 6 6 N 1.31420 * 119.99809 * 12.63867 * 5 3 2 7 7 Si 1.86800 * 120.00365 * 192.63555 * 5 3 2 8 8 H 1.48507 * 109.46902 * 89.99702 * 7 5 3 9 9 H 1.48491 * 109.47627 * 210.00115 * 7 5 3 10 10 H 1.48499 * 109.46780 * 330.00646 * 7 5 3 11 11 C 1.34776 * 120.00010 * 180.02562 * 2 1 3 12 12 O 1.21287 * 119.99796 * 179.97438 * 11 2 1 13 13 C 1.50700 * 120.00150 * 359.97438 * 11 2 1 14 14 C 1.52998 * 109.47114 * 180.02562 * 13 11 2 15 15 H 1.08999 * 110.27716 * 304.36508 * 14 13 11 16 16 C 1.55510 * 110.36508 * 182.25694 * 14 13 11 17 17 C 1.55303 * 100.69208 * 204.60919 * 16 14 13 18 18 C 1.54381 * 102.43578 * 34.13214 * 17 16 14 19 19 O 1.43231 * 107.59269 * 338.53896 * 18 17 16 20 20 H 1.09002 * 109.46674 * 265.85711 * 1 2 3 21 21 H 1.08989 * 109.47098 * 25.85614 * 1 2 3 22 22 H 1.09000 * 109.46960 * 145.86504 * 1 2 3 23 23 H 0.96996 * 119.99702 * 179.97438 * 6 5 3 24 24 H 1.09001 * 109.46596 * 60.00661 * 13 11 2 25 25 H 1.09003 * 109.47552 * 300.00822 * 13 11 2 26 26 H 1.09000 * 111.32791 * 86.74054 * 16 14 13 27 27 H 1.08997 * 111.14509 * 322.40966 * 16 14 13 28 28 H 1.08993 * 110.85031 * 275.83626 * 17 16 14 29 29 H 1.09000 * 110.84599 * 152.41866 * 17 16 14 30 30 H 1.09004 * 109.83152 * 98.05763 * 18 17 16 31 31 H 1.09005 * 109.82864 * 218.93285 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1582 1.2291 -0.3863 5 6 1.5488 2.3369 0.4971 6 7 0.4346 2.2490 1.1884 7 14 2.3237 4.0073 0.1830 8 1 1.7869 4.5721 -1.0812 9 1 2.0035 4.9212 1.3087 10 1 3.7968 3.8564 0.0714 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3854 -2.4723 -0.0005 14 6 2.3797 -3.6352 -0.0005 15 1 3.0638 -3.5473 -0.8445 16 6 1.6242 -4.9932 -0.0579 17 6 2.6771 -5.9362 0.5854 18 6 3.3486 -5.0204 1.6313 19 8 3.1126 -3.6645 1.2346 20 1 -0.3633 -0.0742 1.0250 21 1 -0.3633 0.9247 -0.4481 22 1 -0.3633 -0.8506 -0.5767 23 1 0.0148 3.0514 1.5357 24 1 0.7586 -2.5298 -0.8904 25 1 0.7590 -2.5303 0.8896 26 1 1.4115 -5.2854 -1.0863 27 1 0.7109 -4.9605 0.5362 28 1 3.4008 -6.2733 -0.1566 29 1 2.1937 -6.7860 1.0674 30 1 2.9122 -5.1994 2.6141 31 1 4.4203 -5.2172 1.6614 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082276673.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:36 Heat of formation + Delta-G solvation = -101.886212 kcal Electronic energy + Delta-G solvation = -14556.663304 eV Core-core repulsion = 12030.380504 eV Total energy + Delta-G solvation = -2526.282800 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.76685 -39.63195 -36.60392 -33.79457 -33.10725 -32.38279 -28.53308 -27.49338 -25.91752 -22.76521 -22.28967 -20.45094 -18.85329 -17.90278 -17.70655 -16.64210 -16.42962 -16.17079 -15.81328 -15.38538 -14.58559 -14.08296 -13.76434 -13.53849 -13.27084 -13.11187 -12.83798 -12.63400 -12.54639 -12.34971 -12.17355 -12.00828 -11.93962 -11.60835 -10.98524 -10.37055 -10.26860 -9.62993 -8.32602 -5.97583 1.37496 1.39474 1.52592 2.09495 2.29321 2.97468 3.11341 3.14727 3.63598 3.86741 4.06466 4.12778 4.25423 4.37435 4.54396 4.62634 4.71362 4.86948 4.88356 4.93050 5.02612 5.07594 5.12494 5.33967 5.38426 5.45093 6.12326 6.31597 6.53111 7.20665 7.51531 8.10143 8.70930 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.063766 B = 0.007247 C = 0.006885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.001925 B = 3862.770200 C = 4065.731287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.472 5.472 3 C -0.345 4.345 4 H 0.066 0.934 5 C -0.006 4.006 6 N -0.900 5.900 7 Si 0.991 3.009 8 H -0.262 1.262 9 H -0.273 1.273 10 H -0.279 1.279 11 C 0.437 3.563 12 O -0.627 6.627 13 C -0.120 4.120 14 C 0.093 3.907 15 H 0.051 0.949 16 C -0.140 4.140 17 C -0.145 4.145 18 C 0.033 3.967 19 O -0.408 6.408 20 H 0.039 0.961 21 H 0.056 0.944 22 H 0.072 0.928 23 H 0.273 0.727 24 H 0.124 0.876 25 H 0.095 0.905 26 H 0.107 0.893 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.108 0.892 30 H 0.073 0.927 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.702 -13.209 -2.476 13.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.192 5.192 3 C -0.473 4.473 4 H 0.084 0.916 5 C -0.207 4.207 6 N -0.539 5.539 7 Si 0.814 3.186 8 H -0.187 1.187 9 H -0.198 1.198 10 H -0.204 1.204 11 C 0.227 3.773 12 O -0.514 6.514 13 C -0.160 4.160 14 C 0.036 3.964 15 H 0.069 0.931 16 C -0.177 4.177 17 C -0.182 4.182 18 C -0.044 4.044 19 O -0.329 6.329 20 H 0.057 0.943 21 H 0.075 0.925 22 H 0.090 0.910 23 H 0.082 0.918 24 H 0.142 0.858 25 H 0.113 0.887 26 H 0.126 0.874 27 H 0.110 0.890 28 H 0.101 0.899 29 H 0.126 0.874 30 H 0.092 0.908 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.213 -12.884 -2.265 13.470 hybrid contribution 0.480 1.028 0.088 1.138 sum -2.733 -11.855 -2.177 12.360 Atomic orbital electron populations 1.21414 0.79339 1.00876 1.00400 1.43916 1.06798 1.04694 1.63823 1.19595 1.00294 0.86457 1.40968 0.91595 1.26112 0.97163 1.03019 0.94394 1.70072 1.19886 1.30658 1.33292 0.84983 0.78135 0.76980 0.78505 1.18682 1.19767 1.20380 1.21185 0.88098 0.86558 0.81434 1.90483 1.16404 1.88062 1.56480 1.21761 0.98392 0.90604 1.05203 1.22866 0.91823 0.94968 0.86758 0.93102 1.23421 0.98809 0.91611 1.03853 1.23093 0.98296 0.98648 0.98157 1.23363 1.00361 0.81528 0.99107 1.88596 1.76549 1.27017 1.40689 0.94271 0.92527 0.91007 0.91768 0.85781 0.88675 0.87423 0.88960 0.89931 0.87376 0.90835 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.56 8.44 127.77 1.08 6.64 16 2 N -0.47 -25.85 3.01 -658.90 -1.98 -27.84 16 3 C -0.34 -20.80 9.24 84.04 0.78 -20.02 16 4 H 0.07 4.26 7.45 -2.91 -0.02 4.24 16 5 C -0.01 -0.32 5.04 84.92 0.43 0.11 16 6 N -0.90 -49.83 10.83 21.66 0.23 -49.60 16 7 Si 0.99 44.35 29.57 68.60 2.03 46.38 16 8 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 9 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 11 C 0.44 22.95 7.53 87.66 0.66 23.61 16 12 O -0.63 -38.67 15.25 8.27 0.13 -38.55 16 13 C -0.12 -4.42 4.07 29.85 0.12 -4.30 16 14 C 0.09 3.20 2.93 31.46 0.09 3.30 16 15 H 0.05 1.92 8.00 -2.39 -0.02 1.90 16 16 C -0.14 -2.96 6.62 32.25 0.21 -2.74 16 17 C -0.14 -2.77 7.00 31.85 0.22 -2.55 16 18 C 0.03 0.90 7.80 72.45 0.56 1.46 16 19 O -0.41 -16.46 10.41 -137.66 -1.43 -17.89 16 20 H 0.04 1.83 7.83 -2.39 -0.02 1.81 16 21 H 0.06 2.72 6.80 -2.39 -0.02 2.70 16 22 H 0.07 2.51 6.61 -2.39 -0.02 2.49 16 23 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 24 H 0.12 3.60 7.41 -2.39 -0.02 3.58 16 25 H 0.09 3.32 8.11 -2.39 -0.02 3.30 16 26 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.09 1.73 8.07 -2.39 -0.02 1.71 16 28 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 Total: -1.00 -76.52 258.34 4.24 -72.28 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 1.11 Total: 9.70 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 4.16 Total: 5.51 kcal Atomic # 7 Polarization: -75.68 SS G_CDS: -1.75 Total: -77.43 kcal Atomic # 8 Polarization: -55.13 SS G_CDS: -1.31 Total: -56.44 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -76.52 4.24 -72.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082276673.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.603 kcal (2) G-P(sol) polarization free energy of solvation -76.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds