Wall clock time and date at job start Sun Mar 29 2020 22:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37098 * 119.99861 * 2 1 4 4 H 1.07999 * 120.00005 * 151.16302 * 3 2 1 5 5 C 1.38951 * 120.00083 * 331.16351 * 3 2 1 6 6 N 1.31417 * 119.99812 * 331.78136 * 5 3 2 7 7 Si 1.86801 * 120.00037 * 151.78285 * 5 3 2 8 8 H 1.48507 * 109.46837 * 180.02562 * 7 5 3 9 9 H 1.48502 * 109.47147 * 299.99810 * 7 5 3 10 10 H 1.48491 * 109.47143 * 60.00161 * 7 5 3 11 11 C 1.34769 * 120.00273 * 179.97438 * 2 1 3 12 12 O 1.21288 * 120.00268 * 179.97438 * 11 2 1 13 13 C 1.50706 * 120.00092 * 0.02562 * 11 2 1 14 14 C 1.52994 * 109.47333 * 180.02562 * 13 11 2 15 15 H 1.09000 * 109.87517 * 53.98591 * 14 13 11 16 16 C 1.54094 * 109.87970 * 174.99902 * 14 13 11 17 17 C 1.54809 * 104.19011 * 121.45141 * 16 14 13 18 18 C 1.54994 * 102.09560 * 20.87921 * 17 16 14 19 19 O 1.43751 * 109.87277 * 292.82691 * 14 13 11 20 20 H 1.08999 * 109.46572 * 94.71473 * 1 2 3 21 21 H 1.09001 * 109.46859 * 214.71090 * 1 2 3 22 22 H 1.08998 * 109.47539 * 334.71662 * 1 2 3 23 23 H 0.96992 * 120.00118 * 353.86002 * 6 5 3 24 24 H 1.09001 * 109.46434 * 299.99918 * 13 11 2 25 25 H 1.08999 * 109.46840 * 59.99439 * 13 11 2 26 26 H 1.08998 * 110.48762 * 240.12829 * 16 14 13 27 27 H 1.09003 * 110.48694 * 2.64098 * 16 14 13 28 28 H 1.08998 * 110.90997 * 139.07971 * 17 16 14 29 29 H 1.09008 * 110.90498 * 262.67903 * 17 16 14 30 30 H 1.08999 * 110.61851 * 81.47613 * 18 17 16 31 31 H 1.08996 * 110.61870 * 204.32304 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1301 1.2453 0.4511 5 6 1.5850 2.3161 -0.5804 6 7 0.7277 2.1875 -1.5681 7 14 2.0433 4.0162 0.0433 8 1 1.3079 5.0442 -0.7362 9 1 1.6809 4.1312 1.4788 10 1 3.5048 4.2247 -0.1165 11 6 2.1389 -1.1671 0.0005 12 8 3.3518 -1.1671 0.0001 13 6 1.3855 -2.4723 0.0005 14 6 2.3797 -3.6352 0.0018 15 1 3.0780 -3.5248 0.8315 16 6 1.6229 -4.9715 0.1281 17 6 2.0329 -5.7611 -1.1388 18 6 3.3498 -5.0545 -1.5498 19 8 3.0969 -3.6663 -1.2436 20 1 -0.3632 -0.0845 -1.0242 21 1 -0.3633 -0.8448 0.5852 22 1 -0.3634 0.9292 0.4389 23 1 0.5569 1.3130 -1.9513 24 1 0.7586 -2.5298 0.8903 25 1 0.7591 -2.5302 -0.8896 26 1 1.9353 -5.5033 1.0268 27 1 0.5465 -4.8005 0.1419 28 1 2.2117 -6.8100 -0.9025 29 1 1.2786 -5.6627 -1.9195 30 1 4.1870 -5.4309 -0.9619 31 1 3.5400 -5.1866 -2.6149 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082276674.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:39 Heat of formation + Delta-G solvation = -106.616566 kcal Electronic energy + Delta-G solvation = -14616.579644 eV Core-core repulsion = 12090.091720 eV Total energy + Delta-G solvation = -2526.487923 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.91900 -39.75283 -36.88113 -33.84590 -33.14985 -32.32039 -28.48036 -27.64925 -25.67768 -23.21839 -22.00782 -20.87645 -19.31443 -17.90837 -17.13664 -17.09012 -16.57679 -16.28483 -15.76297 -15.51788 -14.50805 -14.46839 -13.95298 -13.61003 -13.49689 -13.13144 -12.79251 -12.61352 -12.53660 -12.16387 -11.98929 -11.94832 -11.91019 -11.54449 -10.94294 -10.61396 -10.29184 -9.83873 -8.77794 -6.07130 1.52087 1.53404 1.82570 2.02049 2.41294 2.90522 2.97387 3.09356 3.63798 3.78757 4.00286 4.03585 4.15879 4.32127 4.36182 4.48019 4.61814 4.67109 4.77357 4.83666 4.87046 4.91651 4.99721 5.12129 5.24568 5.78713 5.90257 6.11945 6.64144 6.93138 7.41557 7.95422 8.46984 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.064274 B = 0.007304 C = 0.007055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.532440 B = 3832.484249 C = 3967.758933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.480 5.480 3 C -0.436 4.436 4 H 0.052 0.948 5 C -0.025 4.025 6 N -0.888 5.888 7 Si 1.123 2.877 8 H -0.272 1.272 9 H -0.265 1.265 10 H -0.280 1.280 11 C 0.438 3.562 12 O -0.622 6.622 13 C -0.121 4.121 14 C 0.090 3.910 15 H 0.046 0.954 16 C -0.142 4.142 17 C -0.143 4.143 18 C 0.028 3.972 19 O -0.403 6.403 20 H 0.040 0.960 21 H 0.092 0.908 22 H 0.056 0.944 23 H 0.263 0.737 24 H 0.125 0.875 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.367 -13.733 3.207 14.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.201 5.201 3 C -0.563 4.563 4 H 0.070 0.930 5 C -0.228 4.228 6 N -0.522 5.522 7 Si 0.942 3.058 8 H -0.197 1.197 9 H -0.189 1.189 10 H -0.206 1.206 11 C 0.229 3.771 12 O -0.508 6.508 13 C -0.160 4.160 14 C 0.032 3.968 15 H 0.064 0.936 16 C -0.180 4.180 17 C -0.181 4.181 18 C -0.049 4.049 19 O -0.323 6.323 20 H 0.059 0.941 21 H 0.110 0.890 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.143 0.857 25 H 0.115 0.885 26 H 0.113 0.887 27 H 0.116 0.884 28 H 0.125 0.875 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.093 -11.936 2.902 12.947 hybrid contribution 0.638 -1.530 -0.015 1.658 sum -3.456 -13.466 2.887 14.199 Atomic orbital electron populations 1.21711 0.80113 1.02599 1.00746 1.43946 1.06196 1.05048 1.64941 1.20283 1.05387 0.88823 1.41808 0.93036 1.27785 0.95335 1.07012 0.92640 1.70876 1.35674 1.27035 1.18631 0.82844 0.76347 0.69957 0.76614 1.19663 1.18949 1.20618 1.21323 0.88184 0.86638 0.80956 1.90488 1.16581 1.88016 1.55735 1.21855 0.98452 0.90511 1.05213 1.22518 0.92361 0.95169 0.86789 0.93588 1.23028 1.01959 0.93098 0.99900 1.23112 0.96718 1.00779 0.97478 1.23821 0.98156 0.81042 1.01837 1.89057 1.76704 1.26631 1.39930 0.94102 0.89012 0.92523 0.92665 0.85735 0.88487 0.88700 0.88374 0.87475 0.90084 0.92057 0.88541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.93 8.47 127.77 1.08 5.01 16 2 N -0.48 -25.92 2.82 -658.89 -1.86 -27.78 16 3 C -0.44 -26.47 8.96 84.04 0.75 -25.72 16 4 H 0.05 3.41 7.65 -2.91 -0.02 3.39 16 5 C -0.02 -1.41 4.65 84.93 0.39 -1.01 16 6 N -0.89 -51.55 12.84 21.66 0.28 -51.27 16 7 Si 1.12 49.65 30.00 68.60 2.06 51.71 16 8 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 9 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 10 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 11 C 0.44 22.93 7.53 87.66 0.66 23.59 16 12 O -0.62 -38.70 15.27 7.80 0.12 -38.58 16 13 C -0.12 -4.38 3.80 29.85 0.11 -4.26 16 14 C 0.09 3.06 2.93 30.96 0.09 3.15 16 15 H 0.05 1.76 7.93 -2.39 -0.02 1.74 16 16 C -0.14 -3.00 6.64 31.58 0.21 -2.79 16 17 C -0.14 -2.72 7.15 31.89 0.23 -2.50 16 18 C 0.03 0.73 7.72 72.66 0.56 1.29 16 19 O -0.40 -16.09 10.58 -138.12 -1.46 -17.55 16 20 H 0.04 1.75 6.99 -2.39 -0.02 1.73 16 21 H 0.09 2.98 6.63 -2.39 -0.02 2.96 16 22 H 0.06 2.55 7.44 -2.39 -0.02 2.53 16 23 H 0.26 15.52 6.58 -92.71 -0.61 14.91 16 24 H 0.12 3.52 7.41 -2.39 -0.02 3.50 16 25 H 0.10 3.29 8.11 -2.39 -0.02 3.27 16 26 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.10 1.70 7.70 -2.39 -0.02 1.68 16 28 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -79.72 257.85 4.49 -75.22 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 1.27 Total: 11.49 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 4.09 Total: -3.24 kcal Atomic # 7 Polarization: -77.47 SS G_CDS: -1.58 Total: -79.05 kcal Atomic # 8 Polarization: -54.79 SS G_CDS: -1.34 Total: -56.13 kcal Atomic # 14 Polarization: 49.65 SS G_CDS: 2.06 Total: 51.71 kcal Total: -79.72 4.49 -75.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082276674.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.392 kcal (2) G-P(sol) polarization free energy of solvation -79.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds