Wall clock time and date at job start Sun Mar 29 2020 22:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48506 * 109.46812 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47258 * 299.99482 * 3 2 1 6 6 H 1.48499 * 109.47344 * 60.00017 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00020 * 163.07870 * 7 2 1 9 9 N 1.36937 * 120.00219 * 343.07619 * 7 2 1 10 10 C 1.46930 * 120.63259 * 331.83653 * 9 7 2 11 11 C 1.53183 * 108.89468 * 233.51494 * 10 9 7 12 12 C 1.53076 * 109.29478 * 305.57480 * 11 10 9 13 13 N 1.46500 * 109.43981 * 181.23571 * 12 11 10 14 14 C 1.34781 * 119.99994 * 84.79590 * 13 12 11 15 15 N 1.34778 * 119.99776 * 179.97438 * 14 13 12 16 16 O 1.21585 * 119.99655 * 359.97438 * 14 13 12 17 17 C 1.53033 * 109.65646 * 61.15632 * 12 11 10 18 18 C 1.46925 * 120.63413 * 151.81378 * 9 7 2 19 19 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 20 20 H 1.09005 * 109.58138 * 353.37071 * 10 9 7 21 21 H 1.08998 * 109.58912 * 113.65314 * 10 9 7 22 22 H 1.09005 * 109.50135 * 65.38839 * 11 10 9 23 23 H 1.09004 * 109.49749 * 185.48051 * 11 10 9 24 24 H 1.08994 * 109.34643 * 301.12502 * 12 11 10 25 25 H 0.97007 * 120.00023 * 264.79480 * 13 12 11 26 26 H 0.96997 * 120.00130 * 0.02562 * 15 14 13 27 27 H 0.97007 * 119.99410 * 179.97438 * 15 14 13 28 28 H 1.09003 * 109.49897 * 178.74799 * 17 12 11 29 29 H 1.09000 * 109.52987 * 58.66451 * 17 12 11 30 30 H 1.09001 * 109.58688 * 246.20238 * 18 9 7 31 31 H 1.08996 * 109.58570 * 6.47946 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2224 -0.2717 9 7 1.3702 -2.3622 0.3463 10 6 0.2263 -2.3400 1.2681 11 6 0.4942 -3.3197 2.4148 12 6 0.8122 -4.7007 1.8363 13 7 1.0400 -5.6473 2.9310 14 6 -0.0048 -6.2693 3.5124 15 7 0.2049 -7.1405 4.5192 16 8 -1.1364 -6.0445 3.1286 17 6 2.0675 -4.6173 0.9650 18 6 1.8138 -3.6528 -0.1979 19 1 -0.4850 0.8400 -0.0004 20 1 0.0995 -1.3342 1.6688 21 1 -0.6774 -2.6380 0.7364 22 1 1.3429 -2.9691 3.0021 23 1 -0.3879 -3.3839 3.0520 24 1 -0.0281 -5.0409 1.2311 25 1 1.9428 -5.8263 3.2374 26 1 1.1076 -7.3195 4.8256 27 1 -0.5472 -7.5879 4.9379 28 1 2.3043 -5.6062 0.5724 29 1 2.9029 -4.2538 1.5634 30 1 1.0401 -4.0605 -0.8485 31 1 2.7331 -3.5130 -0.7666 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082491342.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:47 Heat of formation + Delta-G solvation = -18.570830 kcal Electronic energy + Delta-G solvation = -14617.809967 eV Core-core repulsion = 12127.432744 eV Total energy + Delta-G solvation = -2490.377223 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.71449 -37.34973 -34.30945 -33.50696 -31.82860 -29.94492 -29.23831 -24.96446 -22.29479 -22.13219 -20.59476 -19.39479 -17.94385 -17.21477 -16.53741 -15.03379 -14.75569 -14.58890 -14.08250 -13.68763 -13.46103 -12.96944 -12.59193 -12.31605 -11.45345 -11.09792 -10.90769 -10.72012 -10.35525 -10.19634 -10.10738 -9.97300 -9.72710 -9.61525 -9.50602 -8.62869 -8.37783 -6.65488 -5.75907 -3.19168 3.15141 3.39034 3.44698 3.46494 3.48654 4.51530 4.64310 5.34157 5.43407 5.49532 5.68872 5.87943 6.12902 6.27591 6.39400 6.49216 6.60682 6.69063 6.76453 6.89880 6.95481 7.00106 7.10825 7.42823 7.72639 7.82412 8.17737 8.47912 8.83948 9.23700 9.87083 10.44022 11.32647 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.059196 B = 0.007359 C = 0.007059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.892816 B = 3803.838561 C = 3965.343012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.173 3.827 11 C -0.147 4.147 12 C 0.167 3.833 13 N -0.740 5.740 14 C 0.701 3.299 15 N -0.875 5.875 16 O -0.594 6.594 17 C -0.138 4.138 18 C 0.148 3.852 19 H 0.254 0.746 20 H 0.089 0.911 21 H 0.021 0.979 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.081 0.919 25 H 0.390 0.610 26 H 0.393 0.607 27 H 0.410 0.590 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.020 0.980 31 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.548 -11.639 7.261 14.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.047 3.953 11 C -0.187 4.187 12 C 0.063 3.937 13 N -0.394 5.394 14 C 0.399 3.601 15 N -0.443 5.443 16 O -0.472 6.472 17 C -0.178 4.178 18 C 0.021 3.979 19 H 0.064 0.936 20 H 0.107 0.893 21 H 0.039 0.961 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.099 0.901 25 H 0.223 0.777 26 H 0.220 0.780 27 H 0.241 0.759 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.038 0.962 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.537 -11.163 6.767 13.524 hybrid contribution 0.960 0.463 0.600 1.223 sum 4.497 -10.699 7.367 13.747 Atomic orbital electron populations 1.70048 1.05282 1.25435 1.53774 1.25069 0.95273 0.98458 1.00863 0.86236 0.79317 0.84010 0.77273 1.20272 1.21715 1.21584 1.19213 0.92543 0.84794 1.41778 0.91614 1.44116 1.35937 1.01531 1.50001 1.20757 0.88674 0.98077 0.87813 1.22583 1.00431 0.95292 1.00439 1.20919 0.98549 0.88142 0.86106 1.45508 1.07744 1.46971 1.39170 1.16078 0.85199 0.78995 0.79853 1.43042 1.12225 1.49270 1.39737 1.90969 1.21647 1.68190 1.66402 1.22331 0.96748 0.99672 0.99057 1.20841 0.98006 0.86743 0.92312 0.93628 0.89328 0.96097 0.92834 0.92777 0.90085 0.77707 0.77968 0.75865 0.92662 0.91919 0.96166 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.62 11.20 55.49 0.62 -26.00 16 2 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 21.76 29.59 -169.99 -5.03 16.73 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 7 C -0.25 -6.98 9.58 -15.06 -0.14 -7.12 16 8 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 9 N -0.59 -14.99 3.00 -172.33 -0.52 -15.51 16 10 C 0.17 4.30 5.30 -3.71 -0.02 4.28 16 11 C -0.15 -3.02 5.66 -26.60 -0.15 -3.17 16 12 C 0.17 2.99 2.41 -67.87 -0.16 2.83 16 13 N -0.74 -10.58 5.08 -58.62 -0.30 -10.88 16 14 C 0.70 10.77 8.80 -86.91 -0.76 10.01 16 15 N -0.87 -8.54 8.88 27.64 0.25 -8.29 16 16 O -0.59 -12.19 16.84 5.29 0.09 -12.10 16 17 C -0.14 -2.32 5.55 -26.62 -0.15 -2.46 16 18 C 0.15 3.08 6.52 -3.71 -0.02 3.06 16 19 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 20 H 0.09 2.45 6.06 -51.93 -0.31 2.13 16 21 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 23 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 24 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 25 H 0.39 4.26 8.62 -40.82 -0.35 3.91 16 26 H 0.39 2.48 8.84 -40.82 -0.36 2.12 16 27 H 0.41 3.52 8.93 -40.82 -0.36 3.15 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 1.17 7.93 -51.93 -0.41 0.75 16 LS Contribution 257.64 15.07 3.88 3.88 Total: -1.00 -33.32 257.64 -6.79 -40.10 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -4.28 Total: 4.67 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: -1.50 Total: 7.38 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: 0.05 Total: -60.67 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.09 Total: -12.10 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -33.32 -6.79 -40.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082491342.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.534 kcal (2) G-P(sol) polarization free energy of solvation -33.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds