Wall clock time and date at job start Sun Mar 29 2020 22:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48506 * 109.46812 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47258 * 299.99482 * 3 2 1 6 6 H 1.48499 * 109.47344 * 60.00017 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00020 * 163.07870 * 7 2 1 9 9 N 1.36937 * 120.00219 * 343.07619 * 7 2 1 10 10 C 1.46930 * 120.63259 * 331.83653 * 9 7 2 11 11 C 1.53183 * 108.89468 * 233.51494 * 10 9 7 12 12 C 1.53076 * 109.29478 * 305.57480 * 11 10 9 13 13 N 1.46500 * 109.43981 * 181.23571 * 12 11 10 14 14 C 1.34781 * 119.99994 * 84.79590 * 13 12 11 15 15 N 1.34778 * 119.99776 * 179.97438 * 14 13 12 16 16 O 1.21585 * 119.99655 * 359.97438 * 14 13 12 17 17 C 1.53033 * 109.65646 * 61.15632 * 12 11 10 18 18 C 1.46925 * 120.63413 * 151.81378 * 9 7 2 19 19 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 20 20 H 1.09005 * 109.58138 * 353.37071 * 10 9 7 21 21 H 1.08998 * 109.58912 * 113.65314 * 10 9 7 22 22 H 1.09005 * 109.50135 * 65.38839 * 11 10 9 23 23 H 1.09004 * 109.49749 * 185.48051 * 11 10 9 24 24 H 1.08994 * 109.34643 * 301.12502 * 12 11 10 25 25 H 0.97007 * 120.00023 * 264.79480 * 13 12 11 26 26 H 0.96997 * 120.00130 * 0.02562 * 15 14 13 27 27 H 0.97007 * 119.99410 * 179.97438 * 15 14 13 28 28 H 1.09003 * 109.49897 * 178.74799 * 17 12 11 29 29 H 1.09000 * 109.52987 * 58.66451 * 17 12 11 30 30 H 1.09001 * 109.58688 * 246.20238 * 18 9 7 31 31 H 1.08996 * 109.58570 * 6.47946 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2224 -0.2717 9 7 1.3702 -2.3622 0.3463 10 6 0.2263 -2.3400 1.2681 11 6 0.4942 -3.3197 2.4148 12 6 0.8122 -4.7007 1.8363 13 7 1.0400 -5.6473 2.9310 14 6 -0.0048 -6.2693 3.5124 15 7 0.2049 -7.1405 4.5192 16 8 -1.1364 -6.0445 3.1286 17 6 2.0675 -4.6173 0.9650 18 6 1.8138 -3.6528 -0.1979 19 1 -0.4850 0.8400 -0.0004 20 1 0.0995 -1.3342 1.6688 21 1 -0.6774 -2.6380 0.7364 22 1 1.3429 -2.9691 3.0021 23 1 -0.3879 -3.3839 3.0520 24 1 -0.0281 -5.0409 1.2311 25 1 1.9428 -5.8263 3.2374 26 1 1.1076 -7.3195 4.8256 27 1 -0.5472 -7.5879 4.9379 28 1 2.3043 -5.6062 0.5724 29 1 2.9029 -4.2538 1.5634 30 1 1.0401 -4.0605 -0.8485 31 1 2.7331 -3.5130 -0.7666 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082491342.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:47 Heat of formation + Delta-G solvation = -45.505480 kcal Electronic energy + Delta-G solvation = -14618.977941 eV Core-core repulsion = 12127.432744 eV Total energy + Delta-G solvation = -2491.545197 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.00481 -38.99266 -35.94938 -34.71850 -33.56273 -31.67397 -30.94588 -26.88128 -23.96462 -23.83925 -21.90259 -21.06201 -19.19369 -18.72766 -18.05608 -16.85143 -16.12145 -16.01733 -15.59588 -15.33960 -15.12800 -14.73625 -14.31724 -14.00578 -13.17101 -13.01648 -12.65063 -12.57202 -12.10575 -12.00775 -11.84940 -11.52842 -11.46707 -11.22694 -10.67339 -10.57428 -9.86720 -8.70552 -7.86476 -5.33210 1.48022 1.49569 1.60572 2.00462 2.23212 2.52622 3.29418 3.63795 3.74332 3.91597 4.11909 4.36864 4.49709 4.69126 4.82378 4.88989 5.06906 5.10681 5.15246 5.33846 5.47266 5.62435 5.65473 5.70938 5.99547 6.08358 6.39774 7.14167 7.20358 7.73101 7.85296 8.38281 9.20891 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.059196 B = 0.007359 C = 0.007059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.892816 B = 3803.838561 C = 3965.343012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.056 4.056 3 Si 0.970 3.030 4 H -0.261 1.261 5 H -0.294 1.294 6 H -0.292 1.292 7 C -0.260 4.260 8 H 0.075 0.925 9 N -0.610 5.610 10 C 0.182 3.818 11 C -0.131 4.131 12 C 0.178 3.822 13 N -0.725 5.725 14 C 0.695 3.305 15 N -0.845 5.845 16 O -0.650 6.650 17 C -0.120 4.120 18 C 0.140 3.860 19 H 0.249 0.751 20 H 0.054 0.946 21 H -0.012 1.012 22 H 0.062 0.938 23 H 0.043 0.957 24 H 0.054 0.946 25 H 0.412 0.588 26 H 0.415 0.585 27 H 0.419 0.581 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.011 0.989 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.907 -13.067 8.254 16.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.251 4.251 3 Si 0.798 3.202 4 H -0.185 1.185 5 H -0.221 1.221 6 H -0.219 1.219 7 C -0.390 4.390 8 H 0.093 0.907 9 N -0.334 5.334 10 C 0.055 3.945 11 C -0.171 4.171 12 C 0.072 3.928 13 N -0.380 5.380 14 C 0.393 3.607 15 N -0.415 5.415 16 O -0.533 6.533 17 C -0.159 4.159 18 C 0.014 3.986 19 H 0.058 0.942 20 H 0.073 0.927 21 H 0.006 0.994 22 H 0.080 0.920 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.249 0.751 26 H 0.246 0.754 27 H 0.252 0.748 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.029 0.971 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.981 -12.667 7.810 16.038 hybrid contribution 0.216 0.828 0.290 0.904 sum 6.198 -11.839 8.100 15.626 Atomic orbital electron populations 1.70221 1.06987 1.25813 1.55640 1.25896 0.95989 1.01871 1.01307 0.85170 0.78818 0.79626 0.76608 1.18501 1.22071 1.21930 1.19621 0.93052 0.85774 1.40579 0.90732 1.44368 1.35680 1.02749 1.50562 1.20463 0.87834 0.97314 0.88851 1.22330 1.00237 0.96090 0.98480 1.20515 0.98412 0.87044 0.86834 1.45062 1.08815 1.45949 1.38218 1.16306 0.84325 0.79508 0.80531 1.42722 1.13989 1.47197 1.37592 1.90947 1.23963 1.70077 1.68269 1.22121 0.96141 1.00393 0.97267 1.21063 0.97930 0.85591 0.94007 0.94190 0.92740 0.99411 0.91974 0.93824 0.92814 0.75097 0.75425 0.74776 0.88959 0.90492 0.97094 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.47 11.20 21.65 0.24 -57.23 16 2 C -0.06 -3.16 4.92 84.86 0.42 -2.74 16 3 Si 0.97 45.08 29.59 68.60 2.03 47.11 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 6 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 7 C -0.26 -14.28 9.58 84.03 0.81 -13.48 16 8 H 0.08 3.89 7.89 -2.91 -0.02 3.87 16 9 N -0.61 -30.98 3.00 -699.11 -2.09 -33.08 16 10 C 0.18 9.37 5.30 86.36 0.46 9.82 16 11 C -0.13 -5.38 5.66 30.68 0.17 -5.20 16 12 C 0.18 6.11 2.41 45.03 0.11 6.22 16 13 N -0.72 -18.65 5.08 -457.64 -2.33 -20.98 16 14 C 0.70 19.92 8.80 179.05 1.58 21.50 16 15 N -0.85 -13.80 8.88 -184.74 -1.64 -15.44 16 16 O -0.65 -26.46 16.84 -3.98 -0.07 -26.52 16 17 C -0.12 -3.65 5.55 30.67 0.17 -3.48 16 18 C 0.14 5.64 6.52 86.36 0.56 6.20 16 19 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 20 H 0.05 3.15 6.06 -2.38 -0.01 3.14 16 21 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 22 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 23 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 24 H 0.05 2.19 7.58 -2.39 -0.02 2.17 16 25 H 0.41 7.16 8.62 -92.70 -0.80 6.37 16 26 H 0.41 3.47 8.84 -92.71 -0.82 2.65 16 27 H 0.42 5.98 8.93 -92.70 -0.83 5.15 16 28 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 2.62 7.93 -2.39 -0.02 2.60 16 Total: -1.00 -74.67 257.64 -0.87 -75.54 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -1.29 Total: 11.73 kcal Atomic # 6 Polarization: 14.58 SS G_CDS: 4.27 Total: 18.85 kcal Atomic # 7 Polarization: -120.90 SS G_CDS: -5.82 Total: -126.72 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.07 Total: -26.52 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -74.67 -0.87 -75.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082491342.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.038 kcal (2) G-P(sol) polarization free energy of solvation -74.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds