Wall clock time and date at job start Sun Mar 29 2020 21:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 110.28291 * 2 1 4 4 C 1.54381 * 110.32498 * 237.87517 * 2 1 3 5 5 N 1.48559 * 104.59231 * 217.14299 * 4 2 1 6 6 C 1.46898 * 110.99694 * 159.03912 * 5 4 2 7 7 C 1.50706 * 109.46910 * 190.00198 * 6 5 4 8 8 H 1.07996 * 119.99993 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99839 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99970 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99806 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47214 * 60.00054 * 11 9 7 13 13 H 1.48501 * 109.46784 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47259 * 299.99746 * 11 9 7 15 15 C 1.48561 * 104.22189 * 39.48442 * 5 4 2 16 16 C 1.54255 * 110.32820 * 122.12536 * 2 1 3 17 17 H 1.09004 * 110.32666 * 237.90187 * 16 2 1 18 18 C 1.50707 * 110.32161 * 0.10256 * 16 2 1 19 19 O 1.20823 * 119.99617 * 87.20380 * 18 16 2 20 20 O 1.34220 * 120.00189 * 267.19833 * 18 16 2 21 21 H 1.09005 * 109.46291 * 177.04953 * 1 2 3 22 22 H 1.08996 * 109.47368 * 297.04762 * 1 2 3 23 23 H 1.08995 * 109.47496 * 57.05493 * 1 2 3 24 24 H 1.08998 * 110.41126 * 335.92547 * 4 2 1 25 25 H 1.09003 * 110.40952 * 98.36474 * 4 2 1 26 26 H 1.08996 * 109.47429 * 309.99687 * 6 5 4 27 27 H 1.09000 * 109.47547 * 70.00224 * 6 5 4 28 28 H 0.97005 * 119.99820 * 180.02562 * 10 9 7 29 29 H 1.08996 * 110.41378 * 79.29370 * 15 5 4 30 30 H 1.09001 * 110.41082 * 201.61592 * 15 5 4 31 31 H 0.96702 * 117.00288 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0663 -0.7698 -1.2260 5 7 3.2709 -1.4800 -0.7245 6 6 3.6093 -2.6180 -1.5896 7 6 4.6731 -3.4543 -0.9262 8 1 5.0589 -3.1691 0.0414 9 6 5.1531 -4.5841 -1.5541 10 7 4.6829 -4.9316 -2.7321 11 14 6.4722 -5.6203 -0.7322 12 1 5.9674 -6.1214 0.5713 13 1 6.8142 -6.7708 -1.6066 14 1 7.6843 -4.7920 -0.5083 15 6 2.8841 -1.9403 0.6339 16 6 2.0659 -0.7692 1.2250 17 1 2.7068 -0.1243 1.8264 18 6 0.9225 -1.2934 2.0551 19 8 0.4327 -2.3677 1.7986 20 8 0.4484 -0.5669 3.0793 21 1 -0.3632 -1.0264 -0.0529 22 1 -0.3634 0.4673 0.9152 23 1 -0.3634 0.5588 -0.8623 24 1 1.3237 -1.4846 -1.5807 25 1 2.3377 -0.0759 -2.0217 26 1 2.7198 -3.2259 -1.7547 27 1 3.9804 -2.2498 -2.5460 28 1 5.0203 -5.7267 -3.1737 29 1 2.2696 -2.8383 0.5704 30 1 3.7714 -2.1299 1.2381 31 1 -0.2861 -0.9444 3.5824 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082557826.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:47 Heat of formation + Delta-G solvation = -94.582334 kcal Electronic energy + Delta-G solvation = -14650.930881 eV Core-core repulsion = 12124.964801 eV Total energy + Delta-G solvation = -2525.966080 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.55785 -38.01296 -35.90777 -33.67121 -31.91694 -29.73993 -27.33794 -24.92087 -23.89973 -21.75518 -20.28373 -19.31978 -17.89592 -16.43858 -16.16853 -15.92698 -15.03801 -14.59565 -13.92798 -13.64161 -13.08840 -12.77545 -12.58390 -12.09698 -11.74303 -11.63786 -11.39976 -11.08862 -10.91800 -10.72462 -10.61328 -10.53822 -10.37702 -10.11992 -9.81935 -9.12631 -8.46063 -7.43811 -6.03490 -4.05467 2.37240 3.15873 3.34211 3.37834 3.40670 4.42700 4.77786 4.81888 4.92475 5.29366 5.36804 5.41130 5.59372 5.66406 5.73097 5.86143 6.01861 6.14793 6.32868 6.45156 6.49172 6.56796 6.70160 7.12780 7.34520 7.70126 7.93138 8.04912 8.14346 8.45880 9.00811 9.58884 11.07837 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.042316 B = 0.008193 C = 0.007409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.532154 B = 3416.632030 C = 3778.500473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.078 4.078 3 H 0.089 0.911 4 C 0.033 3.967 5 N -0.507 5.507 6 C 0.182 3.818 7 C -0.516 4.516 8 H 0.063 0.937 9 C 0.057 3.943 10 N -0.896 5.896 11 Si 0.898 3.102 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.276 1.276 15 C 0.059 3.941 16 C -0.091 4.091 17 H 0.106 0.894 18 C 0.490 3.510 19 O -0.510 6.510 20 O -0.521 6.521 21 H 0.061 0.939 22 H 0.057 0.943 23 H 0.064 0.936 24 H 0.042 0.958 25 H 0.077 0.923 26 H -0.004 1.004 27 H 0.036 0.964 28 H 0.262 0.738 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.676 9.589 7.923 14.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.097 4.097 3 H 0.107 0.893 4 C -0.096 4.096 5 N -0.231 5.231 6 C 0.057 3.943 7 C -0.554 4.554 8 H 0.081 0.919 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.726 3.274 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.201 1.201 15 C -0.069 4.069 16 C -0.111 4.111 17 H 0.124 0.876 18 C 0.332 3.668 19 O -0.398 6.398 20 O -0.333 6.333 21 H 0.080 0.920 22 H 0.076 0.924 23 H 0.083 0.917 24 H 0.060 0.940 25 H 0.095 0.905 26 H 0.014 0.986 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -6.972 9.641 7.460 14.043 hybrid contribution -0.498 -1.480 0.643 1.689 sum -7.470 8.161 8.103 13.713 Atomic orbital electron populations 1.22111 0.95097 1.02644 1.02024 1.21836 0.95129 0.99614 0.93164 0.89291 1.23199 0.92988 0.97451 0.95967 1.65550 1.29063 1.26531 1.01977 1.19906 0.95652 0.86077 0.92686 1.21140 1.21200 1.08229 1.04843 0.91918 1.24989 0.96966 0.97553 0.94953 1.69949 1.43159 1.25823 1.14625 0.86554 0.82003 0.79628 0.79222 1.20236 1.21278 1.20106 1.22958 0.97749 0.93836 0.92373 1.22073 0.93170 1.00456 0.95383 0.87598 1.23453 0.83387 0.82191 0.77729 1.90721 1.58432 1.22477 1.68134 1.84587 1.52163 1.52701 1.43814 0.91954 0.92433 0.91743 0.94009 0.90503 0.98628 0.94641 0.92803 0.91973 0.89695 0.73903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 7.95 37.16 0.30 -1.79 16 2 C -0.08 -1.14 3.65 -89.24 -0.33 -1.47 16 3 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 4 C 0.03 0.59 6.04 -2.18 -0.01 0.57 16 5 N -0.51 -11.10 5.48 -231.26 -1.27 -12.37 16 6 C 0.18 4.85 4.82 -4.97 -0.02 4.82 16 7 C -0.52 -14.65 8.58 -34.44 -0.30 -14.95 16 8 H 0.06 1.74 6.63 -52.49 -0.35 1.39 16 9 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 10 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 11 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 C 0.06 1.19 5.05 -2.06 -0.01 1.18 16 16 C -0.09 -1.42 3.57 -90.27 -0.32 -1.74 16 17 H 0.11 1.45 8.14 -51.93 -0.42 1.02 16 18 C 0.49 7.43 5.25 36.01 0.19 7.62 16 19 O -0.51 -9.47 15.74 -18.75 -0.30 -9.77 16 20 O -0.52 -5.93 13.05 -39.23 -0.51 -6.44 16 21 H 0.06 0.94 7.01 -51.93 -0.36 0.57 16 22 H 0.06 0.67 7.21 -51.93 -0.37 0.29 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.04 0.80 7.50 -51.93 -0.39 0.41 16 25 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.00 -0.12 7.88 -51.93 -0.41 -0.53 16 27 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.06 1.42 6.74 -51.93 -0.35 1.07 16 30 H 0.08 1.72 7.21 -51.93 -0.37 1.35 16 31 H 0.40 2.83 9.10 45.56 0.41 3.25 16 LS Contribution 257.07 15.07 3.87 3.87 Total: -1.00 -32.29 257.07 -6.53 -38.82 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -3.44 Total: -0.52 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -0.60 Total: -4.21 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: -0.53 Total: -38.61 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.81 Total: -16.21 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -32.29 -6.53 -38.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082557826.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.760 kcal (2) G-P(sol) polarization free energy of solvation -32.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds