Wall clock time and date at job start Sun Mar 29 2020 21:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 110.28291 * 2 1 4 4 C 1.54381 * 110.32498 * 237.87517 * 2 1 3 5 5 N 1.48559 * 104.59231 * 217.14299 * 4 2 1 6 6 C 1.46898 * 110.99694 * 159.03912 * 5 4 2 7 7 C 1.50706 * 109.46910 * 190.00198 * 6 5 4 8 8 H 1.07996 * 119.99993 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99839 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99970 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99806 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47214 * 60.00054 * 11 9 7 13 13 H 1.48501 * 109.46784 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47259 * 299.99746 * 11 9 7 15 15 C 1.48561 * 104.22189 * 39.48442 * 5 4 2 16 16 C 1.54255 * 110.32820 * 122.12536 * 2 1 3 17 17 H 1.09004 * 110.32666 * 237.90187 * 16 2 1 18 18 C 1.50707 * 110.32161 * 0.10256 * 16 2 1 19 19 O 1.20823 * 119.99617 * 87.20380 * 18 16 2 20 20 O 1.34220 * 120.00189 * 267.19833 * 18 16 2 21 21 H 1.09005 * 109.46291 * 177.04953 * 1 2 3 22 22 H 1.08996 * 109.47368 * 297.04762 * 1 2 3 23 23 H 1.08995 * 109.47496 * 57.05493 * 1 2 3 24 24 H 1.08998 * 110.41126 * 335.92547 * 4 2 1 25 25 H 1.09003 * 110.40952 * 98.36474 * 4 2 1 26 26 H 1.08996 * 109.47429 * 309.99687 * 6 5 4 27 27 H 1.09000 * 109.47547 * 70.00224 * 6 5 4 28 28 H 0.97005 * 119.99820 * 180.02562 * 10 9 7 29 29 H 1.08996 * 110.41378 * 79.29370 * 15 5 4 30 30 H 1.09001 * 110.41082 * 201.61592 * 15 5 4 31 31 H 0.96702 * 117.00288 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0663 -0.7698 -1.2260 5 7 3.2709 -1.4800 -0.7245 6 6 3.6093 -2.6180 -1.5896 7 6 4.6731 -3.4543 -0.9262 8 1 5.0589 -3.1691 0.0414 9 6 5.1531 -4.5841 -1.5541 10 7 4.6829 -4.9316 -2.7321 11 14 6.4722 -5.6203 -0.7322 12 1 5.9674 -6.1214 0.5713 13 1 6.8142 -6.7708 -1.6066 14 1 7.6843 -4.7920 -0.5083 15 6 2.8841 -1.9403 0.6339 16 6 2.0659 -0.7692 1.2250 17 1 2.7068 -0.1243 1.8264 18 6 0.9225 -1.2934 2.0551 19 8 0.4327 -2.3677 1.7986 20 8 0.4484 -0.5669 3.0793 21 1 -0.3632 -1.0264 -0.0529 22 1 -0.3634 0.4673 0.9152 23 1 -0.3634 0.5588 -0.8623 24 1 1.3237 -1.4846 -1.5807 25 1 2.3377 -0.0759 -2.0217 26 1 2.7198 -3.2259 -1.7547 27 1 3.9804 -2.2498 -2.5460 28 1 5.0203 -5.7267 -3.1737 29 1 2.2696 -2.8383 0.5704 30 1 3.7714 -2.1299 1.2381 31 1 -0.2861 -0.9444 3.5824 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082557826.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:47 Heat of formation + Delta-G solvation = -119.352316 kcal Electronic energy + Delta-G solvation = -14652.004988 eV Core-core repulsion = 12124.964801 eV Total energy + Delta-G solvation = -2527.040187 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.80789 -39.44462 -37.05087 -35.52897 -33.76827 -31.12426 -29.23445 -26.39967 -25.58969 -23.29683 -21.94382 -20.61860 -19.04895 -18.34566 -17.67985 -17.30274 -16.62671 -16.20149 -15.56111 -15.20967 -14.68720 -14.28316 -13.86781 -13.50369 -13.45948 -13.27194 -12.90446 -12.66644 -12.52093 -12.42970 -12.35322 -11.91675 -11.80555 -11.67617 -11.36775 -11.19539 -10.65995 -9.29075 -8.24851 -6.35644 1.17780 1.38841 1.42771 1.50439 2.05036 2.38021 3.08545 3.40668 3.46548 3.55288 3.97450 4.25070 4.37966 4.46718 4.53813 4.67099 4.74510 4.86606 4.88540 4.96584 5.06663 5.16811 5.25615 5.31795 5.56606 5.60972 5.87421 6.11871 6.42439 6.79249 7.01751 7.34220 8.87265 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.042316 B = 0.008193 C = 0.007409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.532154 B = 3416.632030 C = 3778.500473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.068 4.068 3 H 0.123 0.877 4 C 0.027 3.973 5 N -0.511 5.511 6 C 0.197 3.803 7 C -0.534 4.534 8 H 0.067 0.933 9 C 0.000 4.000 10 N -0.934 5.934 11 Si 0.971 3.029 12 H -0.269 1.269 13 H -0.281 1.281 14 H -0.263 1.263 15 C 0.058 3.942 16 C -0.086 4.086 17 H 0.138 0.862 18 C 0.501 3.499 19 O -0.552 6.552 20 O -0.503 6.503 21 H 0.033 0.967 22 H 0.078 0.922 23 H 0.083 0.917 24 H 0.020 0.980 25 H 0.092 0.908 26 H -0.041 1.041 27 H 0.011 0.989 28 H 0.266 0.734 29 H 0.026 0.974 30 H 0.079 0.921 31 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.499 11.234 9.728 16.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.087 4.087 3 H 0.142 0.858 4 C -0.101 4.101 5 N -0.235 5.235 6 C 0.071 3.929 7 C -0.572 4.572 8 H 0.085 0.915 9 C -0.198 4.198 10 N -0.574 5.574 11 Si 0.795 3.205 12 H -0.194 1.194 13 H -0.207 1.207 14 H -0.188 1.188 15 C -0.070 4.070 16 C -0.106 4.106 17 H 0.156 0.844 18 C 0.345 3.655 19 O -0.443 6.443 20 O -0.316 6.316 21 H 0.053 0.947 22 H 0.097 0.903 23 H 0.102 0.898 24 H 0.039 0.961 25 H 0.110 0.890 26 H -0.023 1.023 27 H 0.029 0.971 28 H 0.074 0.926 29 H 0.044 0.956 30 H 0.098 0.902 31 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -6.817 11.325 9.300 16.162 hybrid contribution -0.622 -1.939 0.098 2.038 sum -7.438 9.386 9.398 15.224 Atomic orbital electron populations 1.22065 0.93677 1.01466 1.04066 1.21875 0.96230 1.00324 0.90279 0.85846 1.23348 0.91157 0.97242 0.98401 1.65426 1.31493 1.24284 1.02264 1.19535 0.93825 0.86997 0.92582 1.21494 1.21625 1.08913 1.05141 0.91480 1.25981 0.99390 0.98896 0.95524 1.70087 1.44638 1.26473 1.16186 0.85406 0.79029 0.77816 0.78228 1.19427 1.20667 1.18774 1.22846 0.97725 0.94740 0.91712 1.22002 0.93531 0.98684 0.96374 0.84427 1.23201 0.82825 0.81476 0.78003 1.90729 1.59691 1.24404 1.69456 1.84508 1.52915 1.51628 1.42537 0.94739 0.90286 0.89785 0.96115 0.89001 1.02296 0.97135 0.92576 0.95604 0.90237 0.71253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 7.95 71.98 0.57 -3.05 16 2 C -0.07 -1.81 3.65 -9.90 -0.04 -1.85 16 3 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 4 C 0.03 0.96 6.04 86.45 0.52 1.48 16 5 N -0.51 -22.78 5.48 -885.57 -4.85 -27.63 16 6 C 0.20 11.02 4.82 85.56 0.41 11.43 16 7 C -0.53 -31.15 8.58 25.60 0.22 -30.93 16 8 H 0.07 3.76 6.63 -2.91 -0.02 3.74 16 9 C 0.00 0.02 5.46 84.66 0.46 0.49 16 10 N -0.93 -57.81 13.29 21.45 0.28 -57.53 16 11 Si 0.97 45.16 29.54 68.60 2.03 47.18 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 13 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 14 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 15 C 0.06 2.38 5.05 86.53 0.44 2.81 16 16 C -0.09 -2.51 3.57 -10.56 -0.04 -2.55 16 17 H 0.14 3.20 8.14 -2.39 -0.02 3.18 16 18 C 0.50 14.21 5.25 71.24 0.37 14.59 16 19 O -0.55 -20.43 15.74 21.97 0.35 -20.08 16 20 O -0.50 -9.56 13.05 -51.32 -0.67 -10.23 16 21 H 0.03 1.00 7.01 -2.38 -0.02 0.98 16 22 H 0.08 1.52 7.21 -2.39 -0.02 1.50 16 23 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 24 H 0.02 0.82 7.50 -2.39 -0.02 0.81 16 25 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 26 H -0.04 -2.51 7.88 -2.39 -0.02 -2.53 16 27 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 29 H 0.03 1.24 6.74 -2.39 -0.02 1.22 16 30 H 0.08 3.25 7.21 -2.39 -0.02 3.24 16 31 H 0.43 4.42 9.10 -74.06 -0.67 3.75 16 Total: -1.00 -72.51 257.07 0.51 -72.00 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: 0.46 Total: 3.87 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 2.93 Total: -7.58 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -4.57 Total: -85.16 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -0.32 Total: -30.32 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -72.51 0.51 -72.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082557826.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.352 kcal (2) G-P(sol) polarization free energy of solvation -72.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds