Wall clock time and date at job start Sun Mar 29 2020 21:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 110.29274 * 2 1 4 4 C 1.54380 * 110.32597 * 122.23853 * 2 1 3 5 5 N 1.48561 * 104.59505 * 95.03776 * 4 2 1 6 6 C 1.46901 * 111.00048 * 159.04202 * 5 4 2 7 7 C 1.50710 * 109.46993 * 60.29514 * 6 5 4 8 8 H 1.07994 * 119.99573 * 5.21800 * 7 6 5 9 9 C 1.37875 * 119.99853 * 185.21729 * 7 6 5 10 10 N 1.31518 * 120.00192 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99801 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47143 * 89.99936 * 11 9 7 13 13 H 1.48499 * 109.47011 * 209.99900 * 11 9 7 14 14 H 1.48497 * 109.47064 * 329.99906 * 11 9 7 15 15 C 1.48559 * 104.21988 * 39.49013 * 5 4 2 16 16 C 1.54263 * 110.32362 * 237.87572 * 2 1 3 17 17 H 1.08997 * 110.32442 * 359.97438 * 16 2 1 18 18 C 1.50697 * 110.32451 * 122.11082 * 16 2 1 19 19 O 1.20827 * 120.00094 * 359.97438 * 18 16 2 20 20 O 1.34230 * 119.99785 * 180.02562 * 18 16 2 21 21 H 1.09001 * 109.47693 * 182.12461 * 1 2 3 22 22 H 1.09005 * 109.47106 * 62.12236 * 1 2 3 23 23 H 1.09009 * 109.47001 * 302.12767 * 1 2 3 24 24 H 1.09001 * 110.41647 * 213.82080 * 4 2 1 25 25 H 1.09005 * 110.40986 * 336.26655 * 4 2 1 26 26 H 1.08997 * 109.47473 * 180.29589 * 6 5 4 27 27 H 1.09003 * 109.47084 * 300.30120 * 6 5 4 28 28 H 0.96994 * 119.99942 * 180.02562 * 10 9 7 29 29 H 1.09001 * 110.41394 * 201.73720 * 15 5 4 30 30 H 1.08994 * 110.41580 * 79.29379 * 15 5 4 31 31 H 0.96705 * 116.99993 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0662 -0.7723 1.2245 5 7 2.3146 -2.1475 0.7204 6 6 3.2648 -2.8611 1.5840 7 6 2.7011 -2.9584 2.9783 8 1 1.6998 -2.6085 3.1815 9 6 3.4636 -3.4943 3.9943 10 7 4.6831 -3.9200 3.7469 11 14 2.7646 -3.6156 5.7224 12 1 2.0755 -4.9206 5.8871 13 1 3.8676 -3.5099 6.7110 14 1 1.7951 -2.5126 5.9427 15 6 2.8806 -1.9416 -0.6377 16 6 2.0657 -0.7692 -1.2251 17 1 1.2387 -1.1472 -1.8262 18 6 2.9519 0.1222 -2.0563 19 8 3.1472 1.2654 -1.7174 20 8 3.5235 -0.3535 -3.1738 21 1 -0.3634 -1.0269 0.0381 22 1 -0.3633 0.4805 -0.9084 23 1 -0.3633 0.5466 0.8704 24 1 2.9941 -0.3243 1.5800 25 1 1.3212 -0.7879 2.0201 26 1 3.4328 -3.8631 1.1893 27 1 4.2096 -2.3182 1.6112 28 1 5.2194 -4.2973 4.4616 29 1 2.7489 -2.8376 -1.2443 30 1 3.9359 -1.6766 -0.5736 31 1 4.0834 0.2558 -3.6742 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082557827.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:49 Heat of formation + Delta-G solvation = -120.383436 kcal Electronic energy + Delta-G solvation = -14507.357806 eV Core-core repulsion = 11980.272907 eV Total energy + Delta-G solvation = -2527.084900 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.68998 -39.54117 -37.16016 -35.42410 -33.63187 -31.35304 -28.81892 -27.00293 -25.01165 -23.35569 -21.97880 -20.56341 -19.08908 -18.42445 -17.96085 -17.08555 -16.54465 -16.12470 -15.61911 -14.95168 -14.59211 -14.39655 -13.97532 -13.65445 -13.45582 -13.09409 -12.83699 -12.62761 -12.57554 -12.42092 -12.03690 -11.96314 -11.71969 -11.66115 -11.41585 -11.25872 -10.63993 -9.28036 -8.23449 -6.33814 1.11405 1.41132 1.42667 1.53683 2.04690 2.39510 3.10382 3.37758 3.48225 3.57439 4.02778 4.23583 4.35874 4.45268 4.64372 4.70803 4.81815 4.89693 4.93040 5.10496 5.14888 5.22987 5.25224 5.47391 5.55755 5.61597 5.91795 6.13151 6.43245 6.82050 6.95865 7.36423 8.88513 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.045938 B = 0.007604 C = 0.006965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.372504 B = 3681.394231 C = 4019.368595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.088 4.088 3 H 0.087 0.913 4 C 0.052 3.948 5 N -0.508 5.508 6 C 0.195 3.805 7 C -0.527 4.527 8 H 0.066 0.934 9 C 0.001 3.999 10 N -0.935 5.935 11 Si 0.971 3.029 12 H -0.271 1.271 13 H -0.283 1.283 14 H -0.263 1.263 15 C 0.043 3.957 16 C -0.077 4.077 17 H 0.145 0.855 18 C 0.495 3.505 19 O -0.545 6.545 20 O -0.505 6.505 21 H 0.062 0.938 22 H 0.072 0.928 23 H 0.063 0.937 24 H 0.012 0.988 25 H 0.078 0.922 26 H 0.009 0.991 27 H -0.036 1.036 28 H 0.265 0.735 29 H 0.101 0.899 30 H 0.023 0.977 31 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.175 6.921 -11.094 14.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.107 4.107 3 H 0.105 0.895 4 C -0.076 4.076 5 N -0.232 5.232 6 C 0.068 3.932 7 C -0.566 4.566 8 H 0.084 0.916 9 C -0.197 4.197 10 N -0.575 5.575 11 Si 0.795 3.205 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.187 1.187 15 C -0.085 4.085 16 C -0.096 4.096 17 H 0.163 0.837 18 C 0.338 3.662 19 O -0.436 6.436 20 O -0.319 6.319 21 H 0.081 0.919 22 H 0.091 0.909 23 H 0.082 0.918 24 H 0.031 0.969 25 H 0.096 0.904 26 H 0.027 0.973 27 H -0.018 1.018 28 H 0.074 0.926 29 H 0.120 0.880 30 H 0.042 0.958 31 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -6.695 6.545 -10.719 14.232 hybrid contribution 1.562 0.570 0.718 1.811 sum -5.133 7.115 -10.001 13.304 Atomic orbital electron populations 1.21747 0.91628 1.02713 1.02657 1.22013 0.98448 0.98954 0.91270 0.89469 1.22970 0.98809 0.88376 0.97437 1.65441 1.41366 1.14813 1.01619 1.19567 0.88762 0.92629 0.92196 1.21454 1.00879 1.40588 0.93639 0.91580 1.25949 0.95057 0.94877 1.03826 1.70089 1.10407 1.42467 1.34528 0.85356 0.77966 0.79018 0.78148 1.19603 1.20886 1.18732 1.23034 0.95427 0.97853 0.92204 1.21896 0.97762 0.94184 0.95783 0.83735 1.23374 0.77502 0.86236 0.79040 1.90673 1.60736 1.21370 1.70812 1.84521 1.61454 1.49416 1.36466 0.91922 0.90898 0.91786 0.96908 0.90369 0.97316 1.01794 0.92643 0.88050 0.95836 0.71069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.90 71.98 0.64 -2.50 16 2 C -0.09 -2.67 3.24 -9.90 -0.03 -2.70 16 3 H 0.09 2.78 6.46 -2.38 -0.02 2.76 16 4 C 0.05 2.08 5.25 86.45 0.45 2.53 16 5 N -0.51 -21.96 5.44 -886.01 -4.82 -26.77 16 6 C 0.20 10.54 4.67 85.56 0.40 10.94 16 7 C -0.53 -30.03 8.57 25.60 0.22 -29.81 16 8 H 0.07 3.65 7.15 -2.91 -0.02 3.63 16 9 C 0.00 0.06 5.46 84.65 0.46 0.52 16 10 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 11 Si 0.97 44.32 29.54 68.60 2.03 46.34 16 12 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 14 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 15 C 0.04 1.52 6.03 86.45 0.52 2.04 16 16 C -0.08 -2.14 3.20 -10.64 -0.03 -2.18 16 17 H 0.15 3.18 7.71 -2.39 -0.02 3.16 16 18 C 0.50 13.42 7.50 71.23 0.53 13.95 16 19 O -0.55 -17.80 16.01 21.96 0.35 -17.45 16 20 O -0.51 -10.27 13.42 -51.42 -0.69 -10.96 16 21 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 22 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 23 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 24 H 0.01 0.56 7.97 -2.39 -0.02 0.54 16 25 H 0.08 3.15 7.26 -2.38 -0.02 3.13 16 26 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 27 H -0.04 -2.12 7.97 -2.39 -0.02 -2.14 16 28 H 0.26 15.08 8.31 -92.71 -0.77 14.30 16 29 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 30 H 0.02 0.89 7.62 -2.39 -0.02 0.88 16 31 H 0.43 4.69 9.10 -74.05 -0.67 4.02 16 Total: -1.00 -68.83 262.11 0.77 -68.06 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: 0.45 Total: 4.40 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 3.16 Total: -7.20 kcal Atomic # 7 Polarization: -78.65 SS G_CDS: -4.53 Total: -83.18 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -0.34 Total: -28.41 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -68.83 0.77 -68.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082557827.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.326 kcal (2) G-P(sol) polarization free energy of solvation -68.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds