Wall clock time and date at job start Sun Mar 29 2020 22:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.46906 * 110.99793 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.46978 * 180.02562 * 11 10 9 13 13 H 1.08994 * 109.47607 * 54.99702 * 12 11 10 14 14 C 1.53009 * 109.47130 * 294.99913 * 12 11 10 15 15 C 1.53004 * 109.47036 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.47189 * 60.00339 * 15 14 12 17 17 C 1.53009 * 109.46855 * 299.99772 * 16 15 14 18 18 C 1.53001 * 109.46969 * 175.00329 * 12 11 10 19 19 H 1.08997 * 109.47652 * 60.00030 * 18 12 11 20 20 O 1.42897 * 109.47000 * 299.99592 * 18 12 11 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.00899 * 111.00283 * 303.95218 * 10 9 7 25 25 H 1.08995 * 109.47087 * 299.99901 * 11 10 9 26 26 H 1.09002 * 109.46903 * 59.99922 * 11 10 9 27 27 H 1.08994 * 109.46704 * 300.00342 * 14 12 11 28 28 H 1.09002 * 109.46753 * 60.00236 * 14 12 11 29 29 H 1.08997 * 109.46783 * 299.99857 * 15 14 12 30 30 H 1.09004 * 109.46291 * 179.97438 * 15 14 12 31 31 H 1.08998 * 109.46799 * 180.02562 * 16 15 14 32 32 H 1.08994 * 109.47469 * 59.99308 * 16 15 14 33 33 H 1.09004 * 109.46557 * 299.99981 * 17 16 15 34 34 H 1.08998 * 109.46862 * 180.02562 * 17 16 15 35 35 H 0.96703 * 114.00358 * 180.02562 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 1.5052 -4.9071 0.0011 12 6 2.5300 -6.0431 0.0018 13 1 3.2110 -5.9176 0.8435 14 6 3.3244 -6.0140 -1.3056 15 6 4.3489 -7.1505 -1.3053 16 6 3.6230 -8.4914 -1.1793 17 6 2.8286 -8.5205 0.1281 18 6 1.8046 -7.3843 0.1281 19 1 1.1237 -7.5098 -0.7137 20 8 1.0628 -7.4114 1.3491 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 2.8404 -3.5487 -0.7808 25 1 0.8806 -4.9812 0.8913 26 1 0.8799 -4.9817 -0.8886 27 1 2.6434 -6.1395 -2.1473 28 1 3.8411 -5.0585 -1.3956 29 1 5.0299 -7.0253 -0.4635 30 1 4.9144 -7.1299 -2.2369 31 1 4.3529 -9.3009 -1.1785 32 1 2.9419 -8.6165 -2.0210 33 1 3.5098 -8.3954 0.9699 34 1 2.3119 -9.4759 0.2181 35 1 0.5768 -8.2345 1.4959 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082994302.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:41 Heat of formation + Delta-G solvation = -80.906199 kcal Electronic energy + Delta-G solvation = -14474.738393 eV Core-core repulsion = 12085.198449 eV Total energy + Delta-G solvation = -2389.539944 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.22010 -35.67503 -35.00246 -32.62356 -30.63147 -29.55945 -26.65705 -24.14396 -22.55871 -21.32917 -20.66265 -19.69634 -17.17182 -16.41847 -15.34826 -14.95471 -14.54587 -14.26580 -14.01934 -13.62086 -13.05014 -12.85289 -12.69605 -12.24628 -11.86659 -11.45911 -11.30755 -11.20150 -10.93263 -10.74369 -10.65097 -10.45073 -10.16842 -10.08298 -9.84794 -9.56848 -9.05898 -8.43283 -7.18364 -5.98127 -3.99814 3.34200 3.41054 3.46554 4.25663 4.46966 4.67304 4.71771 4.96497 5.15566 5.19071 5.35985 5.37712 5.45933 5.51987 5.55786 5.71764 5.79728 5.96479 6.02165 6.09310 6.12838 6.24662 6.33361 6.41156 6.68670 6.71730 7.35765 7.50428 7.75562 7.85083 8.20130 8.49487 8.70973 9.10184 9.64892 11.13189 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.052070 B = 0.005869 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.608512 B = 4769.756036 C = 5145.454193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.690 5.690 11 C 0.068 3.932 12 C -0.076 4.076 13 H 0.083 0.917 14 C -0.116 4.116 15 C -0.120 4.120 16 C -0.116 4.116 17 C -0.150 4.150 18 C 0.110 3.890 19 H 0.050 0.950 20 O -0.561 6.561 21 H 0.260 0.740 22 H 0.028 0.972 23 H -0.016 1.016 24 H 0.325 0.675 25 H 0.072 0.928 26 H 0.012 0.988 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.265 -17.152 -2.555 18.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.551 4.551 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.321 5.321 11 C -0.062 4.062 12 C -0.095 4.095 13 H 0.101 0.899 14 C -0.154 4.154 15 C -0.158 4.158 16 C -0.154 4.154 17 C -0.188 4.188 18 C 0.051 3.949 19 H 0.068 0.932 20 O -0.365 6.365 21 H 0.070 0.930 22 H 0.046 0.954 23 H 0.002 0.998 24 H 0.142 0.858 25 H 0.091 0.909 26 H 0.030 0.970 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 5.447 -16.402 -1.811 17.377 hybrid contribution -0.266 0.287 -0.992 1.066 sum 5.181 -16.114 -2.803 17.157 Atomic orbital electron populations 1.69982 1.06099 1.26590 1.51166 1.25003 0.94873 0.99369 0.95437 0.86429 0.80059 0.83374 0.77463 1.19663 1.21138 1.20995 1.21250 0.93530 0.90306 1.49977 0.91950 1.19547 0.90660 0.87439 0.95714 1.60685 1.21289 1.01447 1.48712 1.21847 0.94808 0.89641 0.99936 1.21147 0.97392 0.92463 0.98483 0.89885 1.21604 0.97664 0.99074 0.97014 1.21565 0.98049 0.94374 1.01813 1.21482 0.98972 0.97715 0.97219 1.22262 0.99221 0.98446 0.98862 1.21826 0.91652 0.95200 0.86216 0.93173 1.86620 1.66610 1.41992 1.41289 0.93020 0.95423 0.99773 0.85794 0.90943 0.96955 0.92248 0.90569 0.91764 0.92018 0.92073 0.92068 0.91136 0.92188 0.78368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.65 13.29 55.43 0.74 -26.92 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 7 C -0.51 -15.05 9.32 -34.44 -0.32 -15.38 16 8 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 9 C 0.19 5.35 5.44 -4.97 -0.03 5.32 16 10 N -0.69 -15.75 6.49 -115.05 -0.75 -16.50 16 11 C 0.07 1.32 5.07 -3.82 -0.02 1.30 16 12 C -0.08 -1.17 2.14 -90.62 -0.19 -1.36 16 13 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 14 C -0.12 -1.54 4.98 -26.72 -0.13 -1.67 16 15 C -0.12 -1.30 5.92 -26.73 -0.16 -1.45 16 16 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16 17 C -0.15 -1.54 5.54 -26.75 -0.15 -1.69 16 18 C 0.11 1.41 2.90 -26.75 -0.08 1.34 16 19 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 20 O -0.56 -7.61 12.56 -35.23 -0.44 -8.05 16 21 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 22 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 23 H -0.02 -0.45 8.14 -51.93 -0.42 -0.88 16 24 H 0.32 6.95 6.98 -39.29 -0.27 6.67 16 25 H 0.07 1.54 7.53 -51.93 -0.39 1.14 16 26 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.08 1.08 6.68 -51.93 -0.35 0.74 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.37 3.21 9.08 45.56 0.41 3.62 16 LS Contribution 279.97 15.07 4.22 4.22 Total: -1.00 -32.15 279.97 -7.80 -39.96 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -5.22 Total: 3.49 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -1.33 Total: -13.36 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: -0.01 Total: -43.41 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -0.44 Total: -8.05 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.15 -7.80 -39.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082994302.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.950 kcal (2) G-P(sol) polarization free energy of solvation -32.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds