Wall clock time and date at job start Sun Mar 29 2020 22:20:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86797 * 120.00353 * 2 1
4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1
5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1
6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1
7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1
9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1
10 10 N 1.46901 * 109.46921 * 179.97438 * 9 7 2
11 11 C 1.46906 * 110.99793 * 179.97438 * 10 9 7
12 12 C 1.52995 * 109.46978 * 180.02562 * 11 10 9
13 13 H 1.08994 * 109.47607 * 54.99702 * 12 11 10
14 14 C 1.53009 * 109.47130 * 294.99913 * 12 11 10
15 15 C 1.53004 * 109.47036 * 180.02562 * 14 12 11
16 16 C 1.53001 * 109.47189 * 60.00339 * 15 14 12
17 17 C 1.53009 * 109.46855 * 299.99772 * 16 15 14
18 18 C 1.53001 * 109.46969 * 175.00329 * 12 11 10
19 19 H 1.08997 * 109.47652 * 60.00030 * 18 12 11
20 20 O 1.42897 * 109.47000 * 299.99592 * 18 12 11
21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3
22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2
23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2
24 24 H 1.00899 * 111.00283 * 303.95218 * 10 9 7
25 25 H 1.08995 * 109.47087 * 299.99901 * 11 10 9
26 26 H 1.09002 * 109.46903 * 59.99922 * 11 10 9
27 27 H 1.08994 * 109.46704 * 300.00342 * 14 12 11
28 28 H 1.09002 * 109.46753 * 60.00236 * 14 12 11
29 29 H 1.08997 * 109.46783 * 299.99857 * 15 14 12
30 30 H 1.09004 * 109.46291 * 179.97438 * 15 14 12
31 31 H 1.08998 * 109.46799 * 180.02562 * 16 15 14
32 32 H 1.08994 * 109.47469 * 59.99308 * 16 15 14
33 33 H 1.09004 * 109.46557 * 299.99981 * 17 16 15
34 34 H 1.08998 * 109.46862 * 180.02562 * 17 16 15
35 35 H 0.96703 * 114.00358 * 180.02562 * 20 18 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 3.7092 1.3463 -0.0006
5 1 1.8905 2.3963 -1.2126
6 1 1.8905 2.3964 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2509 -2.4992 0.0005
10 7 2.2055 -3.6157 0.0005
11 6 1.5052 -4.9071 0.0011
12 6 2.5300 -6.0431 0.0018
13 1 3.2110 -5.9176 0.8435
14 6 3.3244 -6.0140 -1.3056
15 6 4.3489 -7.1505 -1.3053
16 6 3.6230 -8.4914 -1.1793
17 6 2.8286 -8.5205 0.1281
18 6 1.8046 -7.3843 0.1281
19 1 1.1237 -7.5098 -0.7137
20 8 1.0628 -7.4114 1.3491
21 1 -0.4850 0.8401 0.0004
22 1 0.6239 -2.5567 0.8903
23 1 0.6246 -2.5571 -0.8897
24 1 2.8404 -3.5487 -0.7808
25 1 0.8806 -4.9812 0.8913
26 1 0.8799 -4.9817 -0.8886
27 1 2.6434 -6.1395 -2.1473
28 1 3.8411 -5.0585 -1.3956
29 1 5.0299 -7.0253 -0.4635
30 1 4.9144 -7.1299 -2.2369
31 1 4.3529 -9.3009 -1.1785
32 1 2.9419 -8.6165 -2.0210
33 1 3.5098 -8.3954 0.9699
34 1 2.3119 -9.4759 0.2181
35 1 0.5768 -8.2345 1.4959
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000082994302.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:20:41
Heat of formation + Delta-G solvation = -80.906199 kcal
Electronic energy + Delta-G solvation = -14474.738393 eV
Core-core repulsion = 12085.198449 eV
Total energy + Delta-G solvation = -2389.539944 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 213.147 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-39.22010 -35.67503 -35.00246 -32.62356 -30.63147 -29.55945 -26.65705 -24.14396
-22.55871 -21.32917 -20.66265 -19.69634 -17.17182 -16.41847 -15.34826 -14.95471
-14.54587 -14.26580 -14.01934 -13.62086 -13.05014 -12.85289 -12.69605 -12.24628
-11.86659 -11.45911 -11.30755 -11.20150 -10.93263 -10.74369 -10.65097 -10.45073
-10.16842 -10.08298 -9.84794 -9.56848 -9.05898 -8.43283 -7.18364 -5.98127
-3.99814 3.34200 3.41054 3.46554 4.25663 4.46966 4.67304 4.71771
4.96497 5.15566 5.19071 5.35985 5.37712 5.45933 5.51987 5.55786
5.71764 5.79728 5.96479 6.02165 6.09310 6.12838 6.24662 6.33361
6.41156 6.68670 6.71730 7.35765 7.50428 7.75562 7.85083 8.20130
8.49487 8.70973 9.10184 9.64892 11.13189
Molecular weight = 213.15amu
Principal moments of inertia in cm(-1)
A = 0.052070 B = 0.005869 C = 0.005440
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 537.608512 B = 4769.756036 C = 5145.454193
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.899 5.899
2 C 0.054 3.946
3 Si 0.899 3.101
4 H -0.272 1.272
5 H -0.285 1.285
6 H -0.284 1.284
7 C -0.512 4.512
8 H 0.062 0.938
9 C 0.193 3.807
10 N -0.690 5.690
11 C 0.068 3.932
12 C -0.076 4.076
13 H 0.083 0.917
14 C -0.116 4.116
15 C -0.120 4.120
16 C -0.116 4.116
17 C -0.150 4.150
18 C 0.110 3.890
19 H 0.050 0.950
20 O -0.561 6.561
21 H 0.260 0.740
22 H 0.028 0.972
23 H -0.016 1.016
24 H 0.325 0.675
25 H 0.072 0.928
26 H 0.012 0.988
27 H 0.059 0.941
28 H 0.076 0.924
29 H 0.064 0.936
30 H 0.061 0.939
31 H 0.061 0.939
32 H 0.061 0.939
33 H 0.070 0.930
34 H 0.059 0.941
35 H 0.370 0.630
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.265 -17.152 -2.555 18.123
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.538 5.538
2 C -0.147 4.147
3 Si 0.727 3.273
4 H -0.197 1.197
5 H -0.211 1.211
6 H -0.210 1.210
7 C -0.551 4.551
8 H 0.081 0.919
9 C 0.066 3.934
10 N -0.321 5.321
11 C -0.062 4.062
12 C -0.095 4.095
13 H 0.101 0.899
14 C -0.154 4.154
15 C -0.158 4.158
16 C -0.154 4.154
17 C -0.188 4.188
18 C 0.051 3.949
19 H 0.068 0.932
20 O -0.365 6.365
21 H 0.070 0.930
22 H 0.046 0.954
23 H 0.002 0.998
24 H 0.142 0.858
25 H 0.091 0.909
26 H 0.030 0.970
27 H 0.078 0.922
28 H 0.094 0.906
29 H 0.082 0.918
30 H 0.080 0.920
31 H 0.079 0.921
32 H 0.079 0.921
33 H 0.089 0.911
34 H 0.078 0.922
35 H 0.216 0.784
Dipole moment (debyes) X Y Z Total
from point charges 5.447 -16.402 -1.811 17.377
hybrid contribution -0.266 0.287 -0.992 1.066
sum 5.181 -16.114 -2.803 17.157
Atomic orbital electron populations
1.69982 1.06099 1.26590 1.51166 1.25003 0.94873 0.99369 0.95437
0.86429 0.80059 0.83374 0.77463 1.19663 1.21138 1.20995 1.21250
0.93530 0.90306 1.49977 0.91950 1.19547 0.90660 0.87439 0.95714
1.60685 1.21289 1.01447 1.48712 1.21847 0.94808 0.89641 0.99936
1.21147 0.97392 0.92463 0.98483 0.89885 1.21604 0.97664 0.99074
0.97014 1.21565 0.98049 0.94374 1.01813 1.21482 0.98972 0.97715
0.97219 1.22262 0.99221 0.98446 0.98862 1.21826 0.91652 0.95200
0.86216 0.93173 1.86620 1.66610 1.41992 1.41289 0.93020 0.95423
0.99773 0.85794 0.90943 0.96955 0.92248 0.90569 0.91764 0.92018
0.92073 0.92068 0.91136 0.92188 0.78368
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.65 13.29 55.43 0.74 -26.92 16
2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16
3 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16
4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16
5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
6 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16
7 C -0.51 -15.05 9.32 -34.44 -0.32 -15.38 16
8 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16
9 C 0.19 5.35 5.44 -4.97 -0.03 5.32 16
10 N -0.69 -15.75 6.49 -115.05 -0.75 -16.50 16
11 C 0.07 1.32 5.07 -3.82 -0.02 1.30 16
12 C -0.08 -1.17 2.14 -90.62 -0.19 -1.36 16
13 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16
14 C -0.12 -1.54 4.98 -26.72 -0.13 -1.67 16
15 C -0.12 -1.30 5.92 -26.73 -0.16 -1.45 16
16 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16
17 C -0.15 -1.54 5.54 -26.75 -0.15 -1.69 16
18 C 0.11 1.41 2.90 -26.75 -0.08 1.34 16
19 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16
20 O -0.56 -7.61 12.56 -35.23 -0.44 -8.05 16
21 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16
22 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16
23 H -0.02 -0.45 8.14 -51.93 -0.42 -0.88 16
24 H 0.32 6.95 6.98 -39.29 -0.27 6.67 16
25 H 0.07 1.54 7.53 -51.93 -0.39 1.14 16
26 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16
27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
28 H 0.08 1.08 6.68 -51.93 -0.35 0.74 16
29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16
32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
35 H 0.37 3.21 9.08 45.56 0.41 3.62 16
LS Contribution 279.97 15.07 4.22 4.22
Total: -1.00 -32.15 279.97 -7.80 -39.96
By element:
Atomic # 1 Polarization: 8.71 SS G_CDS: -5.22 Total: 3.49 kcal
Atomic # 6 Polarization: -12.02 SS G_CDS: -1.33 Total: -13.36 kcal
Atomic # 7 Polarization: -43.40 SS G_CDS: -0.01 Total: -43.41 kcal
Atomic # 8 Polarization: -7.61 SS G_CDS: -0.44 Total: -8.05 kcal
Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal
Total LS contribution 4.22 Total: 4.22 kcal
Total: -32.15 -7.80 -39.96 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000082994302.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.950 kcal
(2) G-P(sol) polarization free energy of solvation -32.152 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.102 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.956 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.906 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds