Wall clock time and date at job start Sun Mar 29 2020 22:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.46906 * 110.99793 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.46978 * 180.02562 * 11 10 9 13 13 H 1.08994 * 109.47607 * 54.99702 * 12 11 10 14 14 C 1.53009 * 109.47130 * 294.99913 * 12 11 10 15 15 C 1.53004 * 109.47036 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.47189 * 60.00339 * 15 14 12 17 17 C 1.53009 * 109.46855 * 299.99772 * 16 15 14 18 18 C 1.53001 * 109.46969 * 175.00329 * 12 11 10 19 19 H 1.08997 * 109.47652 * 60.00030 * 18 12 11 20 20 O 1.42897 * 109.47000 * 299.99592 * 18 12 11 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.00899 * 111.00283 * 303.95218 * 10 9 7 25 25 H 1.08995 * 109.47087 * 299.99901 * 11 10 9 26 26 H 1.09002 * 109.46903 * 59.99922 * 11 10 9 27 27 H 1.08994 * 109.46704 * 300.00342 * 14 12 11 28 28 H 1.09002 * 109.46753 * 60.00236 * 14 12 11 29 29 H 1.08997 * 109.46783 * 299.99857 * 15 14 12 30 30 H 1.09004 * 109.46291 * 179.97438 * 15 14 12 31 31 H 1.08998 * 109.46799 * 180.02562 * 16 15 14 32 32 H 1.08994 * 109.47469 * 59.99308 * 16 15 14 33 33 H 1.09004 * 109.46557 * 299.99981 * 17 16 15 34 34 H 1.08998 * 109.46862 * 180.02562 * 17 16 15 35 35 H 0.96703 * 114.00358 * 180.02562 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 1.5052 -4.9071 0.0011 12 6 2.5300 -6.0431 0.0018 13 1 3.2110 -5.9176 0.8435 14 6 3.3244 -6.0140 -1.3056 15 6 4.3489 -7.1505 -1.3053 16 6 3.6230 -8.4914 -1.1793 17 6 2.8286 -8.5205 0.1281 18 6 1.8046 -7.3843 0.1281 19 1 1.1237 -7.5098 -0.7137 20 8 1.0628 -7.4114 1.3491 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 2.8404 -3.5487 -0.7808 25 1 0.8806 -4.9812 0.8913 26 1 0.8799 -4.9817 -0.8886 27 1 2.6434 -6.1395 -2.1473 28 1 3.8411 -5.0585 -1.3956 29 1 5.0299 -7.0253 -0.4635 30 1 4.9144 -7.1299 -2.2369 31 1 4.3529 -9.3009 -1.1785 32 1 2.9419 -8.6165 -2.0210 33 1 3.5098 -8.3954 0.9699 34 1 2.3119 -9.4759 0.2181 35 1 0.5768 -8.2345 1.4959 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082994302.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:41 Heat of formation + Delta-G solvation = -105.214162 kcal Electronic energy + Delta-G solvation = -14475.792465 eV Core-core repulsion = 12085.198449 eV Total energy + Delta-G solvation = -2390.594016 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.29936 -37.15499 -36.32391 -34.67568 -32.11549 -30.54881 -28.60384 -25.69973 -23.95721 -22.94709 -21.92630 -20.75943 -18.61043 -18.18710 -16.93474 -16.44423 -16.22659 -15.39647 -15.28971 -14.70962 -14.59301 -14.46000 -13.91203 -13.74427 -13.57901 -13.04764 -12.72808 -12.58493 -12.47389 -12.30006 -12.03596 -11.91820 -11.57141 -11.37334 -11.28352 -10.95567 -10.69008 -10.60010 -9.14968 -8.24391 -6.36683 1.40296 1.41869 1.56054 2.39288 3.08542 3.30670 3.49249 3.77881 3.87882 4.02631 4.23098 4.34226 4.38296 4.47366 4.49041 4.59801 4.69495 4.87248 5.00953 5.02273 5.07186 5.20754 5.22417 5.25885 5.28298 5.33748 5.38497 5.54938 5.60864 5.99495 6.42339 6.70903 6.87383 6.97455 7.34680 8.87976 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.052070 B = 0.005869 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.608512 B = 4769.756036 C = 5145.454193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.979 3.021 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.537 4.537 8 H 0.066 0.934 9 C 0.207 3.793 10 N -0.689 5.689 11 C 0.070 3.930 12 C -0.070 4.070 13 H 0.066 0.934 14 C -0.114 4.114 15 C -0.117 4.117 16 C -0.114 4.114 17 C -0.142 4.142 18 C 0.111 3.889 19 H 0.056 0.944 20 O -0.586 6.586 21 H 0.266 0.734 22 H -0.006 1.006 23 H -0.041 1.041 24 H 0.335 0.665 25 H 0.049 0.951 26 H 0.011 0.989 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.713 -17.992 -3.209 19.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.575 4.575 8 H 0.084 0.916 9 C 0.079 3.921 10 N -0.320 5.320 11 C -0.059 4.059 12 C -0.089 4.089 13 H 0.084 0.916 14 C -0.152 4.152 15 C -0.154 4.154 16 C -0.151 4.151 17 C -0.180 4.180 18 C 0.052 3.948 19 H 0.074 0.926 20 O -0.394 6.394 21 H 0.075 0.925 22 H 0.012 0.988 23 H -0.023 1.023 24 H 0.154 0.846 25 H 0.067 0.933 26 H 0.030 0.970 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 6.900 -17.283 -2.468 18.773 hybrid contribution -0.783 0.508 -0.763 1.205 sum 6.117 -16.775 -3.230 18.146 Atomic orbital electron populations 1.70114 1.07976 1.28063 1.51468 1.26035 0.95841 1.03645 0.94384 0.85197 0.78869 0.77818 0.77853 1.18521 1.20028 1.20303 1.21573 0.93836 0.91310 1.50776 0.91617 1.19208 0.90722 0.89233 0.92895 1.60562 1.20575 1.01608 1.49292 1.21869 0.95803 0.89590 0.98654 1.21085 0.96267 0.92345 0.99166 0.91578 1.21580 0.98116 0.99759 0.95722 1.21547 0.97347 0.93981 1.02552 1.21498 0.99356 0.97370 0.96907 1.22193 0.98466 0.98212 0.99125 1.21809 0.92333 0.94470 0.86205 0.92564 1.86568 1.67233 1.43985 1.41649 0.92524 0.98787 1.02300 0.84647 0.93274 0.97049 0.91810 0.92018 0.92076 0.90444 0.90008 0.91303 0.91879 0.89711 0.75936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.55 13.29 21.45 0.28 -58.27 16 2 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 3 Si 0.98 45.43 29.54 68.60 2.03 47.45 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.54 -32.12 9.32 25.60 0.24 -31.88 16 8 H 0.07 3.80 7.81 -2.91 -0.02 3.78 16 9 C 0.21 11.98 5.44 85.56 0.47 12.44 16 10 N -0.69 -32.47 6.49 -517.92 -3.36 -35.83 16 11 C 0.07 2.84 5.07 86.30 0.44 3.27 16 12 C -0.07 -2.14 2.14 -10.79 -0.02 -2.16 16 13 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 14 C -0.11 -2.92 4.98 30.60 0.15 -2.77 16 15 C -0.12 -2.24 5.92 30.60 0.18 -2.06 16 16 C -0.11 -1.79 5.92 30.60 0.18 -1.61 16 17 C -0.14 -2.53 5.54 30.58 0.17 -2.36 16 18 C 0.11 2.70 2.90 30.58 0.09 2.79 16 19 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 20 O -0.59 -15.56 12.56 -148.98 -1.87 -17.43 16 21 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 22 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 23 H -0.04 -2.50 8.14 -2.39 -0.02 -2.52 16 24 H 0.34 14.64 6.98 -89.69 -0.63 14.01 16 25 H 0.05 2.19 7.53 -2.39 -0.02 2.17 16 26 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.06 1.73 6.68 -2.39 -0.02 1.72 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.39 6.25 9.08 -74.06 -0.67 5.57 16 Total: -1.00 -70.16 279.97 -0.80 -70.97 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -0.24 Total: 17.04 kcal Atomic # 6 Polarization: -26.29 SS G_CDS: 2.35 Total: -23.94 kcal Atomic # 7 Polarization: -91.02 SS G_CDS: -3.08 Total: -94.10 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -1.87 Total: -17.43 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -70.16 -0.80 -70.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082994302.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.245 kcal (2) G-P(sol) polarization free energy of solvation -70.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds