Wall clock time and date at job start Sun Mar 29 2020 22:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00177 * 2 1 4 4 H 1.48501 * 109.47158 * 240.00223 * 3 2 1 5 5 H 1.48501 * 109.46994 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46885 * 120.00233 * 3 2 1 7 7 C 1.37876 * 119.99531 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99632 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00406 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47030 * 180.02562 * 9 7 2 11 11 C 1.46906 * 110.99789 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47053 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.47495 * 305.00162 * 12 11 10 14 14 C 1.53005 * 109.46814 * 65.00187 * 12 11 10 15 15 C 1.53005 * 109.46667 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47147 * 300.00010 * 15 14 12 17 17 C 1.52994 * 109.47078 * 60.00639 * 16 15 14 18 18 C 1.53000 * 109.47125 * 184.99886 * 12 11 10 19 19 H 1.09002 * 109.47159 * 300.00482 * 18 12 11 20 20 O 1.42905 * 109.46827 * 60.00437 * 18 12 11 21 21 H 0.96996 * 119.99726 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.46908 * 59.99981 * 9 7 2 23 23 H 1.09002 * 109.46622 * 300.00155 * 9 7 2 24 24 H 1.00902 * 111.00273 * 303.95312 * 10 9 7 25 25 H 1.08992 * 109.47459 * 299.99826 * 11 10 9 26 26 H 1.09004 * 109.47040 * 59.99976 * 11 10 9 27 27 H 1.08993 * 109.46967 * 299.99663 * 14 12 11 28 28 H 1.08997 * 109.46762 * 60.00378 * 14 12 11 29 29 H 1.09001 * 109.46316 * 179.97438 * 15 14 12 30 30 H 1.08997 * 109.46941 * 60.00830 * 15 14 12 31 31 H 1.09001 * 109.47164 * 299.99695 * 16 15 14 32 32 H 1.09000 * 109.46758 * 180.02562 * 16 15 14 33 33 H 1.09003 * 109.47105 * 180.02562 * 17 16 15 34 34 H 1.08992 * 109.47769 * 59.99314 * 17 16 15 35 35 H 0.96699 * 114.00022 * 179.97438 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0005 11 6 1.5052 -4.9071 0.0001 12 6 2.5301 -6.0431 -0.0006 13 1 3.2105 -5.9181 -0.8429 14 6 3.3252 -6.0133 1.3063 15 6 4.3497 -7.1497 1.3058 16 6 3.6238 -8.4907 1.1810 17 6 2.8287 -8.5205 -0.1258 18 6 1.8046 -7.3844 -0.1256 19 1 1.1242 -7.5094 0.7167 20 8 1.0620 -7.4122 -1.3462 21 1 -0.4849 0.8400 -0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8897 24 1 2.8404 -3.5487 -0.7819 25 1 0.8806 -4.9813 0.8902 26 1 0.8799 -4.9818 -0.8897 27 1 3.8420 -5.0578 1.3953 28 1 2.6448 -6.1384 2.1485 29 1 4.9165 -7.1281 2.2367 30 1 5.0303 -7.0250 0.4636 31 1 2.9433 -8.6154 2.0234 32 1 4.3536 -9.3003 1.1812 33 1 2.3112 -9.4757 -0.2145 34 1 3.5091 -8.3959 -0.9681 35 1 0.5759 -8.2353 -1.4922 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082994303.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:44 Heat of formation + Delta-G solvation = -81.605993 kcal Electronic energy + Delta-G solvation = -14467.861106 eV Core-core repulsion = 12078.290817 eV Total energy + Delta-G solvation = -2389.570289 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.16746 -35.61058 -35.01148 -32.60705 -30.64949 -29.49517 -26.66178 -24.01879 -22.45279 -21.35615 -20.68197 -19.70913 -17.15318 -16.36561 -15.30594 -14.73042 -14.51277 -14.45089 -14.00124 -13.63109 -13.07926 -12.67247 -12.64424 -12.20860 -11.82363 -11.40989 -11.35007 -11.17201 -10.77218 -10.73176 -10.67953 -10.42811 -10.19470 -10.06786 -9.83868 -9.57176 -9.08052 -8.41819 -7.16539 -5.97532 -3.99374 3.37142 3.40501 3.43854 4.26875 4.47122 4.69944 4.75548 4.98484 5.22339 5.23328 5.37992 5.40456 5.48839 5.56777 5.61149 5.78143 5.88381 6.01185 6.06709 6.12862 6.16024 6.30161 6.39491 6.61351 6.69062 6.73840 7.35020 7.51655 7.73436 7.84632 8.20341 8.49030 8.70543 9.10124 9.65172 11.13687 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.052008 B = 0.005866 C = 0.005442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.250965 B = 4771.878714 C = 5144.005688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.513 4.513 8 H 0.061 0.939 9 C 0.194 3.806 10 N -0.689 5.689 11 C 0.066 3.934 12 C -0.073 4.073 13 H 0.070 0.930 14 C -0.105 4.105 15 C -0.124 4.124 16 C -0.116 4.116 17 C -0.149 4.149 18 C 0.108 3.892 19 H 0.052 0.948 20 O -0.563 6.563 21 H 0.261 0.739 22 H -0.015 1.015 23 H 0.026 0.974 24 H 0.326 0.674 25 H 0.058 0.942 26 H 0.027 0.973 27 H 0.086 0.914 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.231 -16.998 1.021 17.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.552 4.552 8 H 0.079 0.921 9 C 0.067 3.933 10 N -0.319 5.319 11 C -0.064 4.064 12 C -0.092 4.092 13 H 0.089 0.911 14 C -0.142 4.142 15 C -0.161 4.161 16 C -0.154 4.154 17 C -0.187 4.187 18 C 0.049 3.951 19 H 0.070 0.930 20 O -0.368 6.368 21 H 0.071 0.929 22 H 0.003 0.997 23 H 0.044 0.956 24 H 0.142 0.858 25 H 0.077 0.923 26 H 0.046 0.954 27 H 0.104 0.896 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 5.401 -16.246 1.660 17.200 hybrid contribution -0.247 0.261 -0.842 0.915 sum 5.154 -15.985 0.818 16.816 Atomic orbital electron populations 1.69964 1.06091 1.26803 1.51008 1.24999 0.94871 0.99338 0.95432 0.86541 0.79401 0.82708 0.78605 1.20299 1.21371 1.20184 1.21173 0.93451 0.90331 1.50212 0.92054 1.19526 0.90655 0.87421 0.95671 1.60675 1.21213 1.01387 1.48668 1.21834 0.94923 0.89699 0.99942 1.21130 0.97087 0.92374 0.98654 0.91110 1.21480 0.97294 0.99138 0.96316 1.21622 0.98266 0.94586 1.01635 1.21485 0.98949 0.97838 0.97132 1.22247 0.99158 0.98401 0.98894 1.21870 0.91697 0.95325 0.86181 0.92955 1.86605 1.66637 1.42062 1.41501 0.92917 0.99693 0.95588 0.85768 0.92313 0.95447 0.89566 0.92310 0.92064 0.92095 0.92031 0.92218 0.92251 0.91304 0.78355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.51 -15.00 9.32 -34.44 -0.32 -15.32 16 8 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 9 C 0.19 5.33 5.44 -4.98 -0.03 5.31 16 10 N -0.69 -15.48 5.94 -115.06 -0.68 -16.17 16 11 C 0.07 1.27 5.00 -3.82 -0.02 1.25 16 12 C -0.07 -1.12 2.07 -90.62 -0.19 -1.31 16 13 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 14 C -0.10 -1.47 5.09 -26.73 -0.14 -1.60 16 15 C -0.12 -1.38 5.92 -26.73 -0.16 -1.54 16 16 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 17 C -0.15 -1.54 5.54 -26.76 -0.15 -1.69 16 18 C 0.11 1.39 2.90 -26.75 -0.08 1.31 16 19 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 20 O -0.56 -7.59 12.56 -35.23 -0.44 -8.03 16 21 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 22 H -0.01 -0.43 8.14 -51.93 -0.42 -0.86 16 23 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.33 7.09 8.72 -39.29 -0.34 6.75 16 25 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.03 0.57 7.54 -51.93 -0.39 0.18 16 27 H 0.09 1.37 7.75 -51.93 -0.40 0.97 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.37 3.20 9.08 45.56 0.41 3.62 16 LS Contribution 282.23 15.07 4.25 4.25 Total: -1.00 -31.65 282.23 -7.83 -39.48 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -5.34 Total: 3.60 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -1.33 Total: -13.39 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 0.05 Total: -43.05 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -0.44 Total: -8.03 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.65 -7.83 -39.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082994303.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.123 kcal (2) G-P(sol) polarization free energy of solvation -31.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds