Wall clock time and date at job start Sun Mar 29 2020 22:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00177 * 2 1 4 4 H 1.48501 * 109.47158 * 240.00223 * 3 2 1 5 5 H 1.48501 * 109.46994 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46885 * 120.00233 * 3 2 1 7 7 C 1.37876 * 119.99531 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99632 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00406 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47030 * 180.02562 * 9 7 2 11 11 C 1.46906 * 110.99789 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47053 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.47495 * 305.00162 * 12 11 10 14 14 C 1.53005 * 109.46814 * 65.00187 * 12 11 10 15 15 C 1.53005 * 109.46667 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47147 * 300.00010 * 15 14 12 17 17 C 1.52994 * 109.47078 * 60.00639 * 16 15 14 18 18 C 1.53000 * 109.47125 * 184.99886 * 12 11 10 19 19 H 1.09002 * 109.47159 * 300.00482 * 18 12 11 20 20 O 1.42905 * 109.46827 * 60.00437 * 18 12 11 21 21 H 0.96996 * 119.99726 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.46908 * 59.99981 * 9 7 2 23 23 H 1.09002 * 109.46622 * 300.00155 * 9 7 2 24 24 H 1.00902 * 111.00273 * 303.95312 * 10 9 7 25 25 H 1.08992 * 109.47459 * 299.99826 * 11 10 9 26 26 H 1.09004 * 109.47040 * 59.99976 * 11 10 9 27 27 H 1.08993 * 109.46967 * 299.99663 * 14 12 11 28 28 H 1.08997 * 109.46762 * 60.00378 * 14 12 11 29 29 H 1.09001 * 109.46316 * 179.97438 * 15 14 12 30 30 H 1.08997 * 109.46941 * 60.00830 * 15 14 12 31 31 H 1.09001 * 109.47164 * 299.99695 * 16 15 14 32 32 H 1.09000 * 109.46758 * 180.02562 * 16 15 14 33 33 H 1.09003 * 109.47105 * 180.02562 * 17 16 15 34 34 H 1.08992 * 109.47769 * 59.99314 * 17 16 15 35 35 H 0.96699 * 114.00022 * 179.97438 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0005 11 6 1.5052 -4.9071 0.0001 12 6 2.5301 -6.0431 -0.0006 13 1 3.2105 -5.9181 -0.8429 14 6 3.3252 -6.0133 1.3063 15 6 4.3497 -7.1497 1.3058 16 6 3.6238 -8.4907 1.1810 17 6 2.8287 -8.5205 -0.1258 18 6 1.8046 -7.3844 -0.1256 19 1 1.1242 -7.5094 0.7167 20 8 1.0620 -7.4122 -1.3462 21 1 -0.4849 0.8400 -0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8897 24 1 2.8404 -3.5487 -0.7819 25 1 0.8806 -4.9813 0.8902 26 1 0.8799 -4.9818 -0.8897 27 1 3.8420 -5.0578 1.3953 28 1 2.6448 -6.1384 2.1485 29 1 4.9165 -7.1281 2.2367 30 1 5.0303 -7.0250 0.4636 31 1 2.9433 -8.6154 2.0234 32 1 4.3536 -9.3003 1.1812 33 1 2.3112 -9.4757 -0.2145 34 1 3.5091 -8.3959 -0.9681 35 1 0.5759 -8.2353 -1.4922 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082994303.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:43 Heat of formation + Delta-G solvation = -105.256015 kcal Electronic energy + Delta-G solvation = -14468.886648 eV Core-core repulsion = 12078.290817 eV Total energy + Delta-G solvation = -2390.595831 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.25285 -37.09845 -36.34021 -34.65918 -32.12806 -30.50624 -28.60966 -25.61170 -23.77454 -23.05198 -21.97108 -20.76249 -18.56767 -18.16969 -16.86125 -16.25851 -16.18084 -15.76563 -15.12496 -14.79662 -14.57643 -14.38171 -13.78285 -13.71670 -13.52033 -12.98514 -12.78379 -12.54962 -12.51332 -12.29177 -12.03353 -11.81969 -11.56269 -11.40062 -11.29864 -10.97431 -10.66635 -10.58641 -9.12571 -8.23366 -6.35652 1.40626 1.45143 1.53224 2.39775 3.09465 3.31582 3.49529 3.75051 3.91325 4.12910 4.21217 4.35141 4.45475 4.50139 4.52979 4.63814 4.71433 4.86679 5.00193 5.07203 5.09439 5.22300 5.23386 5.26716 5.28694 5.38830 5.51993 5.58455 5.60493 5.99873 6.41973 6.69065 6.86214 6.95735 7.35480 8.88530 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.052008 B = 0.005866 C = 0.005442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.250965 B = 4771.878714 C = 5144.005688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.978 3.022 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.208 3.792 10 N -0.681 5.681 11 C 0.069 3.931 12 C -0.068 4.068 13 H 0.063 0.937 14 C -0.102 4.102 15 C -0.119 4.119 16 C -0.114 4.114 17 C -0.141 4.141 18 C 0.110 3.890 19 H 0.056 0.944 20 O -0.587 6.587 21 H 0.266 0.734 22 H -0.046 1.046 23 H -0.002 1.002 24 H 0.332 0.668 25 H 0.051 0.949 26 H 0.010 0.990 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.702 -17.930 1.280 19.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.802 3.198 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.576 4.576 8 H 0.084 0.916 9 C 0.080 3.920 10 N -0.311 5.311 11 C -0.060 4.060 12 C -0.087 4.087 13 H 0.082 0.918 14 C -0.139 4.139 15 C -0.156 4.156 16 C -0.151 4.151 17 C -0.179 4.179 18 C 0.051 3.949 19 H 0.074 0.926 20 O -0.395 6.395 21 H 0.074 0.926 22 H -0.028 1.028 23 H 0.016 0.984 24 H 0.148 0.852 25 H 0.069 0.931 26 H 0.028 0.972 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 6.878 -17.220 1.916 18.641 hybrid contribution -0.769 0.510 -0.936 1.314 sum 6.109 -16.710 0.979 17.819 Atomic orbital electron populations 1.70105 1.07971 1.28157 1.51407 1.26029 0.95828 1.03619 0.94411 0.85309 0.78038 0.77231 0.79237 1.19050 1.20667 1.19111 1.21520 0.93852 0.91314 1.50878 0.91559 1.19195 0.90705 0.89238 0.92836 1.60578 1.20257 1.01489 1.48803 1.21881 0.95854 0.89648 0.98637 1.21078 0.96087 0.92280 0.99211 0.91821 1.21416 0.97723 0.99444 0.95367 1.21586 0.97509 0.94191 1.02351 1.21495 0.99335 0.97358 0.96948 1.22178 0.98426 0.98201 0.99069 1.21827 0.92352 0.94569 0.86181 0.92581 1.86550 1.67224 1.44046 1.41709 0.92555 1.02793 0.98413 0.85161 0.93068 0.97218 0.91973 0.92434 0.90825 0.92083 0.91441 0.90076 0.89742 0.91775 0.75918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.53 13.29 21.45 0.28 -58.25 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 3 Si 0.98 45.34 29.54 68.60 2.03 47.36 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.54 -31.99 9.32 25.60 0.24 -31.75 16 8 H 0.07 3.79 7.81 -2.91 -0.02 3.77 16 9 C 0.21 11.94 5.44 85.56 0.47 12.41 16 10 N -0.68 -31.64 5.94 -517.93 -3.08 -34.72 16 11 C 0.07 2.77 5.00 86.30 0.43 3.20 16 12 C -0.07 -2.05 2.07 -10.79 -0.02 -2.08 16 13 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 14 C -0.10 -2.79 5.09 30.60 0.16 -2.64 16 15 C -0.12 -2.41 5.92 30.60 0.18 -2.23 16 16 C -0.11 -1.86 5.92 30.59 0.18 -1.68 16 17 C -0.14 -2.50 5.54 30.58 0.17 -2.33 16 18 C 0.11 2.66 2.90 30.58 0.09 2.75 16 19 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 20 O -0.59 -15.21 12.56 -148.98 -1.87 -17.08 16 21 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 22 H -0.05 -2.84 8.14 -2.39 -0.02 -2.86 16 23 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 24 H 0.33 14.80 8.72 -89.69 -0.78 14.02 16 25 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.01 0.42 7.54 -2.38 -0.02 0.40 16 27 H 0.06 1.99 7.75 -2.39 -0.02 1.97 16 28 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.39 6.10 9.08 -74.06 -0.67 5.42 16 Total: -1.00 -68.95 282.23 -0.68 -69.64 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -0.40 Total: 16.99 kcal Atomic # 6 Polarization: -26.29 SS G_CDS: 2.35 Total: -23.94 kcal Atomic # 7 Polarization: -90.17 SS G_CDS: -2.79 Total: -92.97 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -1.87 Total: -17.08 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -68.95 -0.68 -69.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082994303.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.618 kcal (2) G-P(sol) polarization free energy of solvation -68.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds