Wall clock time and date at job start Sun Mar 29 2020 22:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86793 * 119.99825 * 2 1 4 4 H 1.48497 * 109.47183 * 239.99845 * 3 2 1 5 5 H 1.48504 * 109.47670 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47006 * 120.00110 * 3 2 1 7 7 C 1.37872 * 119.99548 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99498 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00736 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47393 * 179.97438 * 9 7 2 11 11 N 1.46905 * 109.47039 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99870 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.46916 * 180.02562 * 12 11 10 14 14 O 1.42897 * 110.01506 * 64.29822 * 13 12 11 15 15 C 1.54260 * 110.02984 * 302.90510 * 13 12 11 16 16 C 1.54969 * 104.16162 * 217.13896 * 15 13 12 17 17 C 1.54892 * 102.77549 * 37.88528 * 16 15 13 18 18 C 1.53879 * 110.03005 * 185.68883 * 13 12 11 19 19 H 0.97002 * 119.99722 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46495 * 59.99680 * 9 7 2 21 21 H 1.08998 * 109.46910 * 300.00180 * 9 7 2 22 22 H 1.09001 * 109.47393 * 60.00436 * 10 9 7 23 23 H 1.08998 * 109.47408 * 300.00082 * 10 9 7 24 24 H 1.00901 * 110.99869 * 56.04956 * 11 10 9 25 25 H 1.09004 * 109.47031 * 299.99620 * 12 11 10 26 26 H 1.08995 * 109.47111 * 59.99900 * 12 11 10 27 27 H 0.96693 * 114.00182 * 300.69613 * 14 13 12 28 28 H 1.09001 * 110.49283 * 335.78711 * 15 13 12 29 29 H 1.09005 * 110.48910 * 98.43080 * 15 13 12 30 30 H 1.09000 * 110.71593 * 279.57932 * 16 15 13 31 31 H 1.08990 * 110.76474 * 156.22482 * 16 15 13 32 32 H 1.08999 * 110.48776 * 203.40474 * 17 16 15 33 33 H 1.09000 * 110.48381 * 80.76554 * 17 16 15 34 34 H 1.08994 * 110.03013 * 238.57121 * 18 13 12 35 35 H 1.09004 * 110.03339 * 359.97438 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 7 1.5107 -4.9343 -0.0024 12 6 2.4352 -6.0759 -0.0031 13 6 1.6351 -7.3801 -0.0044 14 8 0.8834 -7.4915 -1.2145 15 6 0.6873 -7.4196 1.2121 16 6 0.7050 -8.9036 1.6584 17 6 2.1831 -9.3102 1.4372 18 6 2.5856 -8.5817 0.1383 19 1 -0.4850 0.8401 -0.0004 20 1 0.6241 -2.5566 -0.8903 21 1 0.6248 -2.5571 0.8897 22 1 2.8726 -3.6048 0.8877 23 1 2.8713 -3.6039 -0.8922 24 1 0.8740 -4.9838 -0.7836 25 1 3.0631 -6.0345 -0.8931 26 1 3.0632 -6.0353 0.8869 27 1 0.2575 -6.7682 -1.3568 28 1 1.0622 -6.7774 2.0090 29 1 -0.3196 -7.1199 0.9213 30 1 0.0421 -9.5021 1.0335 31 1 0.4326 -8.9941 2.7098 32 1 2.2671 -10.3896 1.3109 33 1 2.8002 -8.9735 2.2702 34 1 2.4729 -9.2503 -0.7151 35 1 3.6170 -8.2358 0.2080 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083466300.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:10 Heat of formation + Delta-G solvation = -77.756699 kcal Electronic energy + Delta-G solvation = -14333.963220 eV Core-core repulsion = 11944.559849 eV Total energy + Delta-G solvation = -2389.403371 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.32581 -35.58136 -34.69884 -32.86690 -30.12849 -28.81949 -27.68538 -24.58071 -22.78603 -20.93905 -20.56238 -19.65634 -16.61774 -16.30194 -15.81101 -15.56636 -14.71185 -14.46428 -13.76811 -13.61329 -12.97791 -12.87757 -12.35021 -12.23363 -11.82816 -11.44297 -11.17873 -11.06032 -11.02549 -10.92919 -10.69280 -10.58213 -10.41156 -10.06110 -9.77146 -9.32134 -9.16672 -8.36390 -7.89016 -6.00998 -4.03800 3.32839 3.37213 3.39558 4.23551 4.38559 4.52331 4.62779 4.88999 4.93507 5.21353 5.34980 5.47131 5.50172 5.56411 5.65666 5.81539 5.85990 5.90636 6.01502 6.06162 6.17454 6.29311 6.38171 6.38980 6.39432 6.94225 7.39725 7.67865 7.73998 7.79919 7.90068 8.05039 8.41483 9.03024 9.60095 11.10399 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.066218 B = 0.005115 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.742087 B = 5473.093296 C = 5538.934424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.026 3.974 10 C 0.066 3.934 11 N -0.688 5.688 12 C 0.034 3.966 13 C 0.130 3.870 14 O -0.564 6.564 15 C -0.133 4.133 16 C -0.126 4.126 17 C -0.123 4.123 18 C -0.112 4.112 19 H 0.261 0.739 20 H 0.013 0.987 21 H 0.025 0.975 22 H 0.059 0.941 23 H 0.016 0.984 24 H 0.331 0.669 25 H 0.030 0.970 26 H 0.076 0.924 27 H 0.376 0.624 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.857 -16.103 1.441 16.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.062 4.062 11 N -0.320 5.320 12 C -0.096 4.096 13 C 0.089 3.911 14 O -0.371 6.371 15 C -0.171 4.171 16 C -0.163 4.163 17 C -0.160 4.160 18 C -0.150 4.150 19 H 0.071 0.929 20 H 0.032 0.968 21 H 0.044 0.956 22 H 0.077 0.923 23 H 0.034 0.966 24 H 0.148 0.852 25 H 0.048 0.952 26 H 0.095 0.905 27 H 0.225 0.775 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.984 -16.525 2.064 16.919 hybrid contribution 0.503 1.592 -0.881 1.888 sum 3.488 -14.934 1.183 15.381 Atomic orbital electron populations 1.69964 1.06036 1.26736 1.50521 1.24997 0.94848 0.99216 0.95236 0.86639 0.79563 0.83069 0.78600 1.20285 1.21235 1.20220 1.21135 0.92946 0.91035 1.51094 0.92836 1.19061 0.93994 0.90418 0.97693 1.22165 0.96998 0.88303 0.98709 1.60639 1.19846 1.02323 1.49182 1.22687 0.95121 0.90955 1.00813 1.21941 0.91011 0.93746 0.84385 1.86489 1.57083 1.51723 1.41773 1.22880 0.99969 0.95995 0.98214 1.22522 0.96283 0.96784 1.00755 1.22345 0.96814 0.99677 0.97194 1.22119 0.98235 0.96166 0.98523 0.92913 0.96828 0.95641 0.92298 0.96612 0.85197 0.95213 0.90542 0.77532 0.90124 0.91029 0.91640 0.91754 0.91737 0.91523 0.90667 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.22 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.03 0.67 5.23 -27.89 -0.15 0.52 16 10 C 0.07 1.39 5.62 -3.82 -0.02 1.37 16 11 N -0.69 -11.93 6.03 -113.78 -0.69 -12.61 16 12 C 0.03 0.51 4.51 -3.82 -0.02 0.49 16 13 C 0.13 1.69 1.13 -89.50 -0.10 1.59 16 14 O -0.56 -7.71 12.89 -35.23 -0.45 -8.16 16 15 C -0.13 -1.67 5.65 -25.03 -0.14 -1.81 16 16 C -0.13 -1.34 6.91 -24.69 -0.17 -1.51 16 17 C -0.12 -1.22 6.83 -25.07 -0.17 -1.39 16 18 C -0.11 -1.28 6.27 -25.61 -0.16 -1.44 16 19 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 20 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 21 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 23 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.33 5.44 7.32 -39.29 -0.29 5.15 16 25 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.38 4.42 7.63 45.56 0.35 4.77 16 28 H 0.08 1.10 7.85 -51.93 -0.41 0.69 16 29 H 0.07 0.93 8.06 -51.93 -0.42 0.51 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.88 7.95 -51.93 -0.41 0.47 16 35 H 0.07 0.76 7.67 -51.93 -0.40 0.36 16 LS Contribution 283.74 15.07 4.28 4.28 Total: -1.00 -30.25 283.74 -7.84 -38.09 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -5.35 Total: 3.73 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -1.34 Total: -15.81 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.05 Total: -38.81 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: -0.45 Total: -8.16 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.25 -7.84 -38.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083466300.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.669 kcal (2) G-P(sol) polarization free energy of solvation -30.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds