Wall clock time and date at job start Sun Mar 29 2020 22:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86793 * 119.99825 * 2 1 4 4 H 1.48497 * 109.47183 * 239.99845 * 3 2 1 5 5 H 1.48504 * 109.47670 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47006 * 120.00110 * 3 2 1 7 7 C 1.37872 * 119.99548 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99498 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00736 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47393 * 179.97438 * 9 7 2 11 11 N 1.46905 * 109.47039 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99870 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.46916 * 180.02562 * 12 11 10 14 14 O 1.42897 * 110.01506 * 64.29822 * 13 12 11 15 15 C 1.54260 * 110.02984 * 302.90510 * 13 12 11 16 16 C 1.54969 * 104.16162 * 217.13896 * 15 13 12 17 17 C 1.54892 * 102.77549 * 37.88528 * 16 15 13 18 18 C 1.53879 * 110.03005 * 185.68883 * 13 12 11 19 19 H 0.97002 * 119.99722 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46495 * 59.99680 * 9 7 2 21 21 H 1.08998 * 109.46910 * 300.00180 * 9 7 2 22 22 H 1.09001 * 109.47393 * 60.00436 * 10 9 7 23 23 H 1.08998 * 109.47408 * 300.00082 * 10 9 7 24 24 H 1.00901 * 110.99869 * 56.04956 * 11 10 9 25 25 H 1.09004 * 109.47031 * 299.99620 * 12 11 10 26 26 H 1.08995 * 109.47111 * 59.99900 * 12 11 10 27 27 H 0.96693 * 114.00182 * 300.69613 * 14 13 12 28 28 H 1.09001 * 110.49283 * 335.78711 * 15 13 12 29 29 H 1.09005 * 110.48910 * 98.43080 * 15 13 12 30 30 H 1.09000 * 110.71593 * 279.57932 * 16 15 13 31 31 H 1.08990 * 110.76474 * 156.22482 * 16 15 13 32 32 H 1.08999 * 110.48776 * 203.40474 * 17 16 15 33 33 H 1.09000 * 110.48381 * 80.76554 * 17 16 15 34 34 H 1.08994 * 110.03013 * 238.57121 * 18 13 12 35 35 H 1.09004 * 110.03339 * 359.97438 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 7 1.5107 -4.9343 -0.0024 12 6 2.4352 -6.0759 -0.0031 13 6 1.6351 -7.3801 -0.0044 14 8 0.8834 -7.4915 -1.2145 15 6 0.6873 -7.4196 1.2121 16 6 0.7050 -8.9036 1.6584 17 6 2.1831 -9.3102 1.4372 18 6 2.5856 -8.5817 0.1383 19 1 -0.4850 0.8401 -0.0004 20 1 0.6241 -2.5566 -0.8903 21 1 0.6248 -2.5571 0.8897 22 1 2.8726 -3.6048 0.8877 23 1 2.8713 -3.6039 -0.8922 24 1 0.8740 -4.9838 -0.7836 25 1 3.0631 -6.0345 -0.8931 26 1 3.0632 -6.0353 0.8869 27 1 0.2575 -6.7682 -1.3568 28 1 1.0622 -6.7774 2.0090 29 1 -0.3196 -7.1199 0.9213 30 1 0.0421 -9.5021 1.0335 31 1 0.4326 -8.9941 2.7098 32 1 2.2671 -10.3896 1.3109 33 1 2.8002 -8.9735 2.2702 34 1 2.4729 -9.2503 -0.7151 35 1 3.6170 -8.2358 0.2080 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083466300.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:09 Heat of formation + Delta-G solvation = -99.300386 kcal Electronic energy + Delta-G solvation = -14334.897424 eV Core-core repulsion = 11944.559849 eV Total energy + Delta-G solvation = -2390.337576 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.37275 -37.09144 -35.77594 -34.88494 -31.83468 -29.79295 -29.05011 -26.32594 -24.20057 -22.55926 -21.69291 -20.68008 -18.52878 -17.73375 -17.02416 -16.58275 -16.45496 -15.96474 -15.22996 -14.65785 -14.50050 -14.15886 -14.09526 -13.50783 -13.22926 -12.89519 -12.82928 -12.47103 -12.43312 -12.00987 -11.95305 -11.91496 -11.72346 -11.42268 -11.38918 -11.17291 -10.74212 -10.56506 -9.35579 -8.21106 -6.32770 1.40342 1.43355 1.51392 2.40081 3.12453 3.20346 3.26465 3.69297 3.83823 3.90531 4.25904 4.38687 4.46796 4.57630 4.59040 4.65595 4.74800 4.84873 4.90183 5.02285 5.04994 5.06678 5.20794 5.25876 5.38455 5.43475 5.50349 5.64940 5.75778 6.07509 6.22342 6.44779 6.77097 6.83966 7.36640 8.90768 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.066218 B = 0.005115 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.742087 B = 5473.093296 C = 5538.934424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.033 3.967 10 C 0.084 3.916 11 N -0.689 5.689 12 C 0.038 3.962 13 C 0.131 3.869 14 O -0.573 6.573 15 C -0.134 4.134 16 C -0.123 4.123 17 C -0.118 4.118 18 C -0.113 4.113 19 H 0.264 0.736 20 H -0.008 1.008 21 H -0.004 1.004 22 H 0.059 0.941 23 H 0.016 0.984 24 H 0.335 0.665 25 H 0.028 0.972 26 H 0.081 0.919 27 H 0.382 0.618 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.070 -16.651 1.677 17.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.586 4.586 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.045 4.045 11 N -0.320 5.320 12 C -0.092 4.092 13 C 0.090 3.910 14 O -0.381 6.381 15 C -0.172 4.172 16 C -0.160 4.160 17 C -0.156 4.156 18 C -0.151 4.151 19 H 0.073 0.927 20 H 0.010 0.990 21 H 0.014 0.986 22 H 0.077 0.923 23 H 0.035 0.965 24 H 0.153 0.847 25 H 0.046 0.954 26 H 0.099 0.901 27 H 0.231 0.769 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.203 -17.094 2.297 17.753 hybrid contribution 0.082 1.728 -0.964 1.980 sum 4.285 -15.367 1.333 16.008 Atomic orbital electron populations 1.70099 1.07800 1.27902 1.51279 1.25959 0.95762 1.03330 0.94540 0.85481 0.78260 0.78004 0.79174 1.19195 1.20739 1.19162 1.21585 0.93516 0.92324 1.51177 0.92244 1.18909 0.94265 0.92163 0.95161 1.21781 0.95633 0.88333 0.98710 1.60527 1.20155 1.01731 1.49606 1.22748 0.94891 0.90643 1.00883 1.22013 0.91181 0.93459 0.84345 1.86482 1.57315 1.52155 1.42116 1.22853 0.99271 0.97400 0.97683 1.22513 0.97045 0.95069 1.01393 1.22355 0.96109 1.00546 0.96567 1.22164 0.98222 0.95400 0.99317 0.92704 0.98950 0.98559 0.92269 0.96531 0.84668 0.95383 0.90093 0.76884 0.91299 0.91878 0.91625 0.90643 0.90091 0.90722 0.90872 0.90183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.97 44.24 29.54 68.60 2.03 46.27 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.55 -31.39 9.11 25.60 0.23 -31.15 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.73 5.23 29.85 0.16 1.89 16 10 C 0.08 3.55 5.62 86.30 0.49 4.03 16 11 N -0.69 -23.73 6.03 -513.88 -3.10 -26.83 16 12 C 0.04 1.08 4.51 86.30 0.39 1.47 16 13 C 0.13 3.24 1.13 -10.07 -0.01 3.23 16 14 O -0.57 -15.12 12.89 -148.98 -1.92 -17.04 16 15 C -0.13 -3.25 5.65 31.69 0.18 -3.07 16 16 C -0.12 -2.38 6.91 31.91 0.22 -2.16 16 17 C -0.12 -2.05 6.83 31.67 0.22 -1.83 16 18 C -0.11 -2.34 6.27 31.32 0.20 -2.15 16 19 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 20 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 21 H 0.00 -0.24 8.14 -2.39 -0.02 -0.25 16 22 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 23 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.34 11.06 7.32 -89.69 -0.66 10.41 16 25 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.38 8.82 7.63 -74.06 -0.57 8.26 16 28 H 0.07 1.83 7.85 -2.39 -0.02 1.81 16 29 H 0.06 1.61 8.06 -2.38 -0.02 1.59 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.07 1.56 7.95 -2.39 -0.02 1.54 16 35 H 0.08 1.52 7.67 -2.38 -0.02 1.50 16 Total: -1.00 -63.90 283.74 -0.34 -64.24 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -0.16 Total: 19.09 kcal Atomic # 6 Polarization: -31.68 SS G_CDS: 2.53 Total: -29.16 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -2.81 Total: -83.41 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -1.92 Total: -17.04 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -63.90 -0.34 -64.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083466300.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.059 kcal (2) G-P(sol) polarization free energy of solvation -63.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds