Wall clock time and date at job start Sun Mar 29 2020 22:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99763 * 2 1 4 4 H 1.48500 * 109.47133 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47175 * 300.00192 * 3 2 1 6 6 H 1.48492 * 109.47006 * 60.00674 * 3 2 1 7 7 C 1.37877 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99874 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99768 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46656 * 179.97438 * 9 7 2 11 11 C 1.46906 * 110.99573 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47020 * 179.97438 * 11 10 9 13 13 O 1.42906 * 109.47024 * 64.99964 * 12 11 10 14 14 C 1.52995 * 109.47307 * 305.00431 * 12 11 10 15 15 C 1.52998 * 109.47307 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.47251 * 59.99905 * 15 14 12 17 17 C 1.53001 * 109.46524 * 299.99900 * 16 15 14 18 18 C 1.52994 * 109.47364 * 184.99828 * 12 11 10 19 19 H 0.96997 * 120.00560 * 359.97438 * 1 2 3 20 20 H 1.08990 * 109.47142 * 59.99937 * 9 7 2 21 21 H 1.09004 * 109.46726 * 299.99835 * 9 7 2 22 22 H 1.00896 * 111.00219 * 303.95295 * 10 9 7 23 23 H 1.09002 * 109.46991 * 299.99841 * 11 10 9 24 24 H 1.09000 * 109.47202 * 60.00133 * 11 10 9 25 25 H 0.96704 * 114.00090 * 299.99610 * 13 12 11 26 26 H 1.09001 * 109.46608 * 299.99606 * 14 12 11 27 27 H 1.08998 * 109.47751 * 59.99606 * 14 12 11 28 28 H 1.08999 * 109.47196 * 299.99868 * 15 14 12 29 29 H 1.09001 * 109.47293 * 179.97438 * 15 14 12 30 30 H 1.08991 * 109.47056 * 180.02562 * 16 15 14 31 31 H 1.08999 * 109.47051 * 59.99874 * 16 15 14 32 32 H 1.08999 * 109.47435 * 299.99739 * 17 16 15 33 33 H 1.08999 * 109.46710 * 180.02562 * 17 16 15 34 34 H 1.09001 * 109.47141 * 300.00369 * 18 12 11 35 35 H 1.09001 * 109.47088 * 60.00066 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5054 -4.9071 -0.0012 12 6 2.5303 -6.0430 -0.0032 13 8 3.2740 -6.0157 1.2168 14 6 3.4845 -5.8670 -1.1860 15 6 4.5099 -7.0025 -1.1876 16 6 3.7849 -8.3441 -1.3125 17 6 2.8307 -8.5201 -0.1295 18 6 1.8049 -7.3842 -0.1282 19 1 -0.4851 0.8400 0.0004 20 1 0.6241 -2.5567 -0.8902 21 1 0.6247 -2.5571 0.8897 22 1 2.8400 -3.5483 -0.7836 23 1 0.8815 -4.9816 0.8895 24 1 0.8795 -4.9814 -0.8905 25 1 3.7605 -5.1927 1.3626 26 1 2.9173 -5.8878 -2.1166 27 1 4.0014 -4.9114 -1.0970 28 1 5.0770 -6.9813 -0.2571 29 1 5.1894 -6.8774 -2.0307 30 1 4.5153 -9.1531 -1.3132 31 1 3.2177 -8.3654 -2.2431 32 1 3.3979 -8.4989 0.8011 33 1 2.3146 -9.4760 -0.2182 34 1 1.1251 -7.5096 0.7145 35 1 1.2377 -7.4051 -1.0588 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083466352.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:35 Heat of formation + Delta-G solvation = -79.089948 kcal Electronic energy + Delta-G solvation = -14712.260720 eV Core-core repulsion = 12322.799534 eV Total energy + Delta-G solvation = -2389.461185 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.37846 -35.34329 -34.34291 -32.41256 -30.76487 -29.92221 -26.82383 -24.26763 -22.71027 -21.41683 -20.66269 -19.52914 -16.67679 -15.98562 -15.51072 -14.90622 -14.58569 -14.14350 -14.02302 -13.37803 -13.21519 -12.84191 -12.26878 -12.13567 -11.98957 -11.55792 -11.24431 -11.21584 -10.95405 -10.72555 -10.69707 -10.60068 -10.37947 -10.08618 -9.76514 -9.35902 -9.05841 -8.50943 -7.37188 -6.05425 -4.07827 3.29626 3.36892 3.41660 4.40748 4.55488 4.79338 4.86545 5.03273 5.13685 5.29193 5.30812 5.48965 5.54491 5.61790 5.65327 5.76477 5.86902 6.04061 6.09521 6.10643 6.23822 6.27778 6.30951 6.43127 6.52900 6.61839 7.21884 7.38614 7.74593 8.08366 8.16338 8.32845 8.56281 9.01361 9.57368 11.05759 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.060500 B = 0.006067 C = 0.005820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.695254 B = 4614.163587 C = 4810.032687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.514 4.514 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.691 5.691 11 C 0.031 3.969 12 C 0.142 3.858 13 O -0.558 6.558 14 C -0.148 4.148 15 C -0.113 4.113 16 C -0.118 4.118 17 C -0.114 4.114 18 C -0.105 4.105 19 H 0.261 0.739 20 H -0.014 1.014 21 H 0.028 0.972 22 H 0.327 0.673 23 H 0.071 0.929 24 H 0.024 0.976 25 H 0.383 0.617 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.963 -14.227 -2.570 15.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.323 5.323 11 C -0.099 4.099 12 C 0.101 3.899 13 O -0.365 6.365 14 C -0.186 4.186 15 C -0.151 4.151 16 C -0.156 4.156 17 C -0.151 4.151 18 C -0.143 4.143 19 H 0.071 0.929 20 H 0.004 0.996 21 H 0.046 0.954 22 H 0.145 0.855 23 H 0.090 0.910 24 H 0.042 0.958 25 H 0.232 0.768 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.630 -14.679 -1.823 15.827 hybrid contribution 0.109 1.584 -1.047 1.902 sum 5.739 -13.095 -2.871 14.583 Atomic orbital electron populations 1.69972 1.06117 1.26729 1.50893 1.25001 0.94878 0.99428 0.95300 0.86420 0.80032 0.83301 0.77525 1.19649 1.21095 1.20955 1.21214 0.93505 0.90226 1.50367 0.91926 1.19551 0.90590 0.87303 0.95815 1.60698 1.21512 1.01365 1.48697 1.22603 0.95894 0.90936 1.00466 1.21088 0.90540 0.94014 0.84273 1.86344 1.66814 1.43189 1.40134 1.22226 0.98202 0.99304 0.98896 1.21430 0.97634 0.94242 1.01755 1.21535 0.98377 0.97317 0.98363 1.21442 0.97247 0.97280 0.99149 1.21495 0.97587 0.93255 1.01948 0.92931 0.99622 0.95390 0.85499 0.91048 0.95812 0.76777 0.91720 0.90753 0.91380 0.92599 0.92492 0.92482 0.91118 0.92658 0.91453 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.51 -14.57 9.32 -34.44 -0.32 -14.89 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.19 5.11 5.44 -4.97 -0.03 5.09 16 10 N -0.69 -14.50 6.01 -115.05 -0.69 -15.19 16 11 C 0.03 0.57 4.93 -3.82 -0.02 0.55 16 12 C 0.14 2.10 0.79 -90.63 -0.07 2.03 16 13 O -0.56 -8.76 11.63 -35.23 -0.41 -9.17 16 14 C -0.15 -2.00 4.46 -26.73 -0.12 -2.11 16 15 C -0.11 -1.33 5.78 -26.73 -0.15 -1.48 16 16 C -0.12 -1.28 5.92 -26.73 -0.16 -1.43 16 17 C -0.11 -1.31 5.78 -26.70 -0.15 -1.47 16 18 C -0.10 -1.37 4.95 -26.71 -0.13 -1.50 16 19 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 20 H -0.01 -0.39 8.14 -51.93 -0.42 -0.82 16 21 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.33 6.51 6.61 -39.29 -0.26 6.25 16 23 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.38 5.80 8.66 45.56 0.39 6.19 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.07 1.05 6.51 -51.93 -0.34 0.71 16 28 H 0.07 0.84 7.68 -51.93 -0.40 0.44 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.90 7.68 -51.93 -0.40 0.50 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 277.42 15.07 4.18 4.18 Total: -1.00 -29.71 277.42 -7.66 -37.37 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -5.20 Total: 6.15 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -1.25 Total: -13.74 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.04 Total: -41.43 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.41 Total: -9.17 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.71 -7.66 -37.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083466352.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.721 kcal (2) G-P(sol) polarization free energy of solvation -29.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds