Wall clock time and date at job start Sun Mar 29 2020 22:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99763 * 2 1 4 4 H 1.48500 * 109.47133 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47175 * 300.00192 * 3 2 1 6 6 H 1.48492 * 109.47006 * 60.00674 * 3 2 1 7 7 C 1.37877 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99874 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99768 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46656 * 179.97438 * 9 7 2 11 11 C 1.46906 * 110.99573 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47020 * 179.97438 * 11 10 9 13 13 O 1.42906 * 109.47024 * 64.99964 * 12 11 10 14 14 C 1.52995 * 109.47307 * 305.00431 * 12 11 10 15 15 C 1.52998 * 109.47307 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.47251 * 59.99905 * 15 14 12 17 17 C 1.53001 * 109.46524 * 299.99900 * 16 15 14 18 18 C 1.52994 * 109.47364 * 184.99828 * 12 11 10 19 19 H 0.96997 * 120.00560 * 359.97438 * 1 2 3 20 20 H 1.08990 * 109.47142 * 59.99937 * 9 7 2 21 21 H 1.09004 * 109.46726 * 299.99835 * 9 7 2 22 22 H 1.00896 * 111.00219 * 303.95295 * 10 9 7 23 23 H 1.09002 * 109.46991 * 299.99841 * 11 10 9 24 24 H 1.09000 * 109.47202 * 60.00133 * 11 10 9 25 25 H 0.96704 * 114.00090 * 299.99610 * 13 12 11 26 26 H 1.09001 * 109.46608 * 299.99606 * 14 12 11 27 27 H 1.08998 * 109.47751 * 59.99606 * 14 12 11 28 28 H 1.08999 * 109.47196 * 299.99868 * 15 14 12 29 29 H 1.09001 * 109.47293 * 179.97438 * 15 14 12 30 30 H 1.08991 * 109.47056 * 180.02562 * 16 15 14 31 31 H 1.08999 * 109.47051 * 59.99874 * 16 15 14 32 32 H 1.08999 * 109.47435 * 299.99739 * 17 16 15 33 33 H 1.08999 * 109.46710 * 180.02562 * 17 16 15 34 34 H 1.09001 * 109.47141 * 300.00369 * 18 12 11 35 35 H 1.09001 * 109.47088 * 60.00066 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5054 -4.9071 -0.0012 12 6 2.5303 -6.0430 -0.0032 13 8 3.2740 -6.0157 1.2168 14 6 3.4845 -5.8670 -1.1860 15 6 4.5099 -7.0025 -1.1876 16 6 3.7849 -8.3441 -1.3125 17 6 2.8307 -8.5201 -0.1295 18 6 1.8049 -7.3842 -0.1282 19 1 -0.4851 0.8400 0.0004 20 1 0.6241 -2.5567 -0.8902 21 1 0.6247 -2.5571 0.8897 22 1 2.8400 -3.5483 -0.7836 23 1 0.8815 -4.9816 0.8895 24 1 0.8795 -4.9814 -0.8905 25 1 3.7605 -5.1927 1.3626 26 1 2.9173 -5.8878 -2.1166 27 1 4.0014 -4.9114 -1.0970 28 1 5.0770 -6.9813 -0.2571 29 1 5.1894 -6.8774 -2.0307 30 1 4.5153 -9.1531 -1.3132 31 1 3.2177 -8.3654 -2.2431 32 1 3.3979 -8.4989 0.8011 33 1 2.3146 -9.4760 -0.2182 34 1 1.1251 -7.5096 0.7145 35 1 1.2377 -7.4051 -1.0588 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083466352.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:34 Heat of formation + Delta-G solvation = -100.374359 kcal Electronic energy + Delta-G solvation = -14713.183681 eV Core-core repulsion = 12322.799534 eV Total energy + Delta-G solvation = -2390.384147 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.56140 -36.88211 -35.74781 -34.44026 -31.79113 -31.30999 -28.65301 -25.83992 -24.07714 -23.01803 -21.91376 -20.61414 -18.69480 -17.33039 -16.89683 -16.42375 -16.39261 -15.45556 -15.19618 -14.84770 -14.54136 -14.24765 -13.98821 -13.44484 -13.24397 -13.01102 -12.80240 -12.75075 -12.60183 -12.35508 -12.08079 -11.88036 -11.62290 -11.42962 -11.33699 -10.78521 -10.69616 -10.48345 -9.20348 -8.24706 -6.36518 1.40975 1.41893 1.55730 2.38835 3.08992 3.34577 3.50661 3.80935 3.90324 3.92914 4.24325 4.38548 4.43102 4.55831 4.60715 4.63753 4.77343 4.84995 4.94721 5.05421 5.10085 5.14840 5.21948 5.31720 5.32586 5.38258 5.46069 5.58566 5.62831 5.97808 6.36210 6.66237 6.85295 6.92077 7.34909 8.87398 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.060500 B = 0.006067 C = 0.005820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.695254 B = 4614.163587 C = 4810.032687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.976 3.024 4 H -0.260 1.260 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.535 4.535 8 H 0.068 0.932 9 C 0.208 3.792 10 N -0.683 5.683 11 C 0.032 3.968 12 C 0.147 3.853 13 O -0.564 6.564 14 C -0.146 4.146 15 C -0.110 4.110 16 C -0.117 4.117 17 C -0.110 4.110 18 C -0.107 4.107 19 H 0.265 0.735 20 H -0.040 1.040 21 H -0.004 1.004 22 H 0.337 0.663 23 H 0.054 0.946 24 H 0.025 0.975 25 H 0.384 0.616 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.427 -14.733 -3.268 16.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.184 1.184 5 H -0.203 1.203 6 H -0.205 1.205 7 C -0.573 4.573 8 H 0.086 0.914 9 C 0.080 3.920 10 N -0.315 5.315 11 C -0.098 4.098 12 C 0.106 3.894 13 O -0.371 6.371 14 C -0.184 4.184 15 C -0.147 4.147 16 C -0.154 4.154 17 C -0.147 4.147 18 C -0.145 4.145 19 H 0.074 0.926 20 H -0.022 1.022 21 H 0.014 0.986 22 H 0.156 0.844 23 H 0.072 0.928 24 H 0.043 0.957 25 H 0.233 0.767 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.111 -15.213 -2.524 16.981 hybrid contribution -0.391 1.693 -0.816 1.920 sum 6.720 -13.519 -3.341 15.462 Atomic orbital electron populations 1.70103 1.07940 1.28022 1.51548 1.25995 0.95783 1.03563 0.94502 0.85236 0.78974 0.78071 0.77716 1.18429 1.20295 1.20470 1.21567 0.93896 0.91228 1.50585 0.91430 1.19203 0.90692 0.89067 0.93044 1.60538 1.20535 1.01205 1.49199 1.22688 0.96785 0.90707 0.99625 1.21110 0.90003 0.93539 0.84719 1.86351 1.66779 1.43233 1.40732 1.22192 0.98288 0.99783 0.98141 1.21415 0.97248 0.94041 1.02022 1.21547 0.98541 0.97119 0.98210 1.21419 0.96926 0.97344 0.99036 1.21550 0.97945 0.92712 1.02288 0.92589 1.02240 0.98569 0.84436 0.92764 0.95730 0.76691 0.91298 0.91716 0.92096 0.91171 0.90823 0.91634 0.92371 0.90777 0.92127 0.90094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.05 13.29 21.45 0.28 -56.77 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.98 44.22 29.54 68.60 2.03 46.24 16 4 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.53 -30.54 9.32 25.60 0.24 -30.30 16 8 H 0.07 3.71 7.81 -2.91 -0.02 3.69 16 9 C 0.21 11.30 5.44 85.56 0.47 11.77 16 10 N -0.68 -29.08 6.01 -517.91 -3.11 -32.19 16 11 C 0.03 1.17 4.93 86.30 0.43 1.60 16 12 C 0.15 4.26 0.79 -10.80 -0.01 4.25 16 13 O -0.56 -17.43 11.63 -148.98 -1.73 -19.16 16 14 C -0.15 -3.72 4.46 30.59 0.14 -3.58 16 15 C -0.11 -2.32 5.78 30.60 0.18 -2.14 16 16 C -0.12 -2.17 5.92 30.60 0.18 -1.98 16 17 C -0.11 -2.29 5.78 30.61 0.18 -2.11 16 18 C -0.11 -2.65 4.95 30.61 0.15 -2.49 16 19 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 20 H -0.04 -2.34 8.14 -2.39 -0.02 -2.36 16 21 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 22 H 0.34 13.38 6.61 -89.70 -0.59 12.79 16 23 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.38 11.52 8.66 -74.05 -0.64 10.88 16 26 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.06 1.76 6.51 -2.39 -0.02 1.75 16 28 H 0.06 1.38 7.68 -2.39 -0.02 1.37 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.37 7.68 -2.39 -0.02 1.35 16 33 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.08 1.81 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -63.43 277.42 -0.30 -63.73 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: -0.17 Total: 22.70 kcal Atomic # 6 Polarization: -26.96 SS G_CDS: 2.41 Total: -24.56 kcal Atomic # 7 Polarization: -86.13 SS G_CDS: -2.83 Total: -88.96 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -1.73 Total: -19.16 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -63.43 -0.30 -63.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083466352.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.644 kcal (2) G-P(sol) polarization free energy of solvation -63.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds