Wall clock time and date at job start Sun Mar 29 2020 21:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46960 * 2 1 4 4 N 1.46904 * 109.47274 * 240.00324 * 2 1 3 5 5 C 1.46904 * 110.99787 * 84.99528 * 4 2 1 6 6 C 1.52998 * 109.46905 * 185.16458 * 5 4 2 7 7 C 1.50701 * 115.55130 * 297.13217 * 6 5 4 8 8 H 1.08004 * 120.00394 * 95.21645 * 7 6 5 9 9 C 1.37878 * 120.00011 * 275.21096 * 7 6 5 10 10 N 1.31525 * 119.99669 * 7.11034 * 9 7 6 11 11 Si 1.86797 * 120.00119 * 187.10334 * 9 7 6 12 12 H 1.48510 * 109.46925 * 180.02562 * 11 9 7 13 13 H 1.48493 * 109.47469 * 300.00262 * 11 9 7 14 14 H 1.48496 * 109.47027 * 60.00844 * 11 9 7 15 15 C 1.53010 * 117.49806 * 82.79926 * 6 5 4 16 16 C 1.53001 * 117.50187 * 151.45824 * 6 5 4 17 17 C 1.50704 * 109.47692 * 120.00043 * 2 1 3 18 18 O 1.20825 * 119.99879 * 119.99833 * 17 2 1 19 19 O 1.34227 * 119.99932 * 300.00341 * 17 2 1 20 20 H 1.09002 * 109.46837 * 299.99459 * 1 2 3 21 21 H 1.08992 * 109.47371 * 59.99719 * 1 2 3 22 22 H 1.09002 * 109.46960 * 180.02562 * 1 2 3 23 23 H 1.00891 * 111.00013 * 208.95308 * 4 2 1 24 24 H 1.08997 * 109.46973 * 65.16975 * 5 4 2 25 25 H 1.08994 * 109.47275 * 305.16192 * 5 4 2 26 26 H 0.97000 * 119.99731 * 355.39238 * 10 9 7 27 27 H 1.09005 * 117.49561 * 215.00229 * 15 6 5 28 28 H 1.08997 * 117.49608 * 0.02562 * 15 6 5 29 29 H 1.09000 * 117.49559 * 359.97438 * 16 6 5 30 30 H 1.08992 * 117.50157 * 144.97161 * 16 6 5 31 31 H 0.96698 * 117.00389 * 179.97438 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0824 0.2228 -2.3469 6 6 2.4716 -0.5598 -3.6027 7 6 3.8336 -1.2040 -3.5710 8 1 3.9357 -2.2370 -3.2729 9 6 4.9496 -0.4746 -3.9227 10 7 4.8463 0.8167 -4.1501 11 14 6.6081 -1.3203 -4.0759 12 1 7.6385 -0.3229 -4.4620 13 1 6.9747 -1.9309 -2.7729 14 1 6.5298 -2.3790 -5.1143 15 6 1.3581 -1.2981 -4.3485 16 6 1.9717 -0.0304 -4.9483 17 6 2.0325 -0.7104 1.2304 18 8 2.7271 -1.6928 1.1195 19 8 1.7082 -0.2519 2.4496 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 2.9172 -1.1204 -1.0288 24 1 2.8268 0.9955 -2.1551 25 1 1.1072 0.6864 -2.4955 26 1 3.9753 1.2435 -4.1361 27 1 1.6108 -2.2497 -4.8162 28 1 0.3483 -1.2259 -3.9447 29 1 1.3651 0.8751 -4.9389 30 1 2.6280 -0.1476 -5.8105 31 1 2.0537 -0.7410 3.2088 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854732.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:51 Heat of formation + Delta-G solvation = -75.879475 kcal Electronic energy + Delta-G solvation = -14500.339615 eV Core-core repulsion = 11975.184551 eV Total energy + Delta-G solvation = -2525.155063 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.20627 -37.35044 -36.08349 -34.94069 -31.83559 -30.07465 -25.66638 -24.85208 -23.63445 -21.19171 -20.24311 -19.44616 -17.91540 -16.92259 -16.20836 -15.84153 -14.74432 -14.13469 -13.73154 -13.65878 -13.41836 -12.76161 -12.32104 -12.11645 -11.89826 -11.72335 -11.45045 -11.16834 -10.80940 -10.63560 -10.35233 -10.24259 -10.09241 -9.48937 -8.51174 -8.35678 -8.28725 -7.80061 -6.32854 -4.06044 2.34353 3.07250 3.46085 3.46774 3.65359 4.52578 4.61430 5.18613 5.23243 5.27876 5.36262 5.46012 5.84165 5.91806 5.96939 6.22367 6.30110 6.32473 6.53110 6.55902 6.60635 6.71051 6.94294 7.25080 7.33744 7.69203 7.96792 8.10363 8.33045 8.48184 8.91705 9.68517 11.06203 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.028873 B = 0.009772 C = 0.008024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.523672 B = 2864.520398 C = 3488.713687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.091 3.909 3 H 0.075 0.925 4 N -0.662 5.662 5 C 0.100 3.900 6 C 0.028 3.972 7 C -0.569 4.569 8 H 0.054 0.946 9 C 0.025 3.975 10 N -0.908 5.908 11 Si 1.065 2.935 12 H -0.284 1.284 13 H -0.288 1.288 14 H -0.288 1.288 15 C -0.183 4.183 16 C -0.184 4.184 17 C 0.476 3.524 18 O -0.501 6.501 19 O -0.519 6.519 20 H 0.063 0.937 21 H 0.069 0.931 22 H 0.064 0.936 23 H 0.365 0.635 24 H 0.030 0.970 25 H 0.045 0.955 26 H 0.274 0.726 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.932 0.343 8.659 11.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.020 4.020 3 H 0.092 0.908 4 N -0.300 5.300 5 C -0.028 4.028 6 C 0.027 3.973 7 C -0.607 4.607 8 H 0.072 0.928 9 C -0.180 4.180 10 N -0.543 5.543 11 Si 0.893 3.107 12 H -0.209 1.209 13 H -0.214 1.214 14 H -0.214 1.214 15 C -0.221 4.221 16 C -0.222 4.222 17 C 0.317 3.683 18 O -0.387 6.387 19 O -0.331 6.331 20 H 0.082 0.918 21 H 0.088 0.912 22 H 0.083 0.917 23 H 0.188 0.812 24 H 0.048 0.952 25 H 0.063 0.937 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -5.866 0.317 7.836 9.794 hybrid contribution -0.638 -0.078 0.978 1.170 sum -6.504 0.239 8.814 10.956 Atomic orbital electron populations 1.21722 0.91972 1.03042 1.02264 1.21188 0.97851 0.96617 0.86349 0.90771 1.60571 1.36625 1.31730 1.01033 1.21639 0.97398 0.93083 0.90704 1.18977 0.93851 0.97347 0.87134 1.21313 0.90247 0.99218 1.49957 0.92772 1.25774 1.03165 0.95592 0.93501 1.70755 1.28088 1.09368 1.46065 0.83600 0.75335 0.75094 0.76652 1.20944 1.21430 1.21439 1.22762 0.97112 0.95546 1.06661 1.22792 1.03778 0.95706 0.99928 1.23735 0.76945 0.82829 0.84747 1.90733 1.35374 1.25790 1.86803 1.84533 1.72617 1.59086 1.16852 0.91845 0.91231 0.91651 0.81195 0.95194 0.93669 0.91516 0.90497 0.91395 0.91745 0.89959 0.73599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 9.34 37.16 0.35 -1.42 16 2 C 0.09 1.48 3.13 -68.86 -0.22 1.26 16 3 H 0.07 1.15 7.86 -51.93 -0.41 0.75 16 4 N -0.66 -13.42 6.15 -107.95 -0.66 -14.09 16 5 C 0.10 2.18 5.24 -3.82 -0.02 2.16 16 6 C 0.03 0.68 1.14 -155.66 -0.18 0.50 16 7 C -0.57 -15.68 8.24 -34.44 -0.28 -15.96 16 8 H 0.05 1.54 7.82 -52.48 -0.41 1.13 16 9 C 0.02 0.70 5.39 -17.81 -0.10 0.60 16 10 N -0.91 -26.50 13.57 55.43 0.75 -25.75 16 11 Si 1.06 25.19 29.91 -169.99 -5.08 20.11 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 14 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 15 C -0.18 -4.08 9.96 -26.69 -0.27 -4.34 16 16 C -0.18 -4.24 8.74 -26.69 -0.23 -4.48 16 17 C 0.48 7.53 7.65 36.01 0.28 7.81 16 18 O -0.50 -9.67 16.40 -18.75 -0.31 -9.97 16 19 O -0.52 -6.09 13.33 -39.25 -0.52 -6.62 16 20 H 0.06 0.71 8.11 -51.93 -0.42 0.29 16 21 H 0.07 0.92 7.39 -51.93 -0.38 0.54 16 22 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.36 8.34 6.94 -39.30 -0.27 8.07 16 24 H 0.03 0.71 7.83 -51.93 -0.41 0.30 16 25 H 0.04 0.89 7.29 -51.93 -0.38 0.51 16 26 H 0.27 7.88 6.20 -40.82 -0.25 7.63 16 27 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 28 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 29 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 31 H 0.41 2.96 9.10 45.56 0.41 3.37 16 LS Contribution 268.75 15.07 4.05 4.05 Total: -1.00 -31.13 268.75 -5.87 -37.00 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -3.43 Total: 9.14 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -0.67 Total: -13.87 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.09 Total: -39.83 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.83 Total: -16.59 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -5.08 Total: 20.11 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.13 -5.87 -37.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854732.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.878 kcal (2) G-P(sol) polarization free energy of solvation -31.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds