Wall clock time and date at job start Sun Mar 29 2020 21:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46960 * 2 1 4 4 N 1.46904 * 109.47274 * 240.00324 * 2 1 3 5 5 C 1.46904 * 110.99787 * 84.99528 * 4 2 1 6 6 C 1.52998 * 109.46905 * 185.16458 * 5 4 2 7 7 C 1.50701 * 115.55130 * 297.13217 * 6 5 4 8 8 H 1.08004 * 120.00394 * 95.21645 * 7 6 5 9 9 C 1.37878 * 120.00011 * 275.21096 * 7 6 5 10 10 N 1.31525 * 119.99669 * 7.11034 * 9 7 6 11 11 Si 1.86797 * 120.00119 * 187.10334 * 9 7 6 12 12 H 1.48510 * 109.46925 * 180.02562 * 11 9 7 13 13 H 1.48493 * 109.47469 * 300.00262 * 11 9 7 14 14 H 1.48496 * 109.47027 * 60.00844 * 11 9 7 15 15 C 1.53010 * 117.49806 * 82.79926 * 6 5 4 16 16 C 1.53001 * 117.50187 * 151.45824 * 6 5 4 17 17 C 1.50704 * 109.47692 * 120.00043 * 2 1 3 18 18 O 1.20825 * 119.99879 * 119.99833 * 17 2 1 19 19 O 1.34227 * 119.99932 * 300.00341 * 17 2 1 20 20 H 1.09002 * 109.46837 * 299.99459 * 1 2 3 21 21 H 1.08992 * 109.47371 * 59.99719 * 1 2 3 22 22 H 1.09002 * 109.46960 * 180.02562 * 1 2 3 23 23 H 1.00891 * 111.00013 * 208.95308 * 4 2 1 24 24 H 1.08997 * 109.46973 * 65.16975 * 5 4 2 25 25 H 1.08994 * 109.47275 * 305.16192 * 5 4 2 26 26 H 0.97000 * 119.99731 * 355.39238 * 10 9 7 27 27 H 1.09005 * 117.49561 * 215.00229 * 15 6 5 28 28 H 1.08997 * 117.49608 * 0.02562 * 15 6 5 29 29 H 1.09000 * 117.49559 * 359.97438 * 16 6 5 30 30 H 1.08992 * 117.50157 * 144.97161 * 16 6 5 31 31 H 0.96698 * 117.00389 * 179.97438 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0824 0.2228 -2.3469 6 6 2.4716 -0.5598 -3.6027 7 6 3.8336 -1.2040 -3.5710 8 1 3.9357 -2.2370 -3.2729 9 6 4.9496 -0.4746 -3.9227 10 7 4.8463 0.8167 -4.1501 11 14 6.6081 -1.3203 -4.0759 12 1 7.6385 -0.3229 -4.4620 13 1 6.9747 -1.9309 -2.7729 14 1 6.5298 -2.3790 -5.1143 15 6 1.3581 -1.2981 -4.3485 16 6 1.9717 -0.0304 -4.9483 17 6 2.0325 -0.7104 1.2304 18 8 2.7271 -1.6928 1.1195 19 8 1.7082 -0.2519 2.4496 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 2.9172 -1.1204 -1.0288 24 1 2.8268 0.9955 -2.1551 25 1 1.1072 0.6864 -2.4955 26 1 3.9753 1.2435 -4.1361 27 1 1.6108 -2.2497 -4.8162 28 1 0.3483 -1.2259 -3.9447 29 1 1.3651 0.8751 -4.9389 30 1 2.6280 -0.1476 -5.8105 31 1 2.0537 -0.7410 3.2088 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854732.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:51 Heat of formation + Delta-G solvation = -98.162178 kcal Electronic energy + Delta-G solvation = -14501.305865 eV Core-core repulsion = 11975.184551 eV Total energy + Delta-G solvation = -2526.121314 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.44601 -39.08843 -37.29159 -36.42057 -33.92705 -31.46132 -27.26335 -26.72745 -25.07635 -22.99316 -21.49429 -21.35829 -19.16170 -18.57860 -17.83505 -17.12841 -16.12989 -15.84737 -15.63335 -15.30513 -14.74772 -14.38886 -14.18401 -13.55148 -13.33745 -12.97819 -12.76250 -12.67187 -12.57326 -12.34307 -12.15800 -11.97047 -11.55080 -11.30730 -10.46038 -10.38452 -10.22125 -9.40519 -8.51763 -6.24554 1.11174 1.53051 1.58972 1.78350 1.93664 2.57204 3.05955 3.24337 3.53804 4.01093 4.04540 4.18360 4.27531 4.45432 4.54670 4.66109 4.77723 4.86709 4.90940 4.93036 5.11816 5.26030 5.45235 5.51800 5.52773 6.10480 6.21270 6.27939 6.36709 6.77560 6.93991 7.54816 8.88422 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.028873 B = 0.009772 C = 0.008024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.523672 B = 2864.520398 C = 3488.713687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.083 3.917 3 H 0.084 0.916 4 N -0.669 5.669 5 C 0.115 3.885 6 C -0.003 4.003 7 C -0.577 4.577 8 H 0.036 0.964 9 C -0.019 4.019 10 N -0.931 5.931 11 Si 1.104 2.896 12 H -0.284 1.284 13 H -0.279 1.279 14 H -0.276 1.276 15 C -0.166 4.166 16 C -0.181 4.181 17 C 0.485 3.515 18 O -0.543 6.543 19 O -0.502 6.502 20 H 0.091 0.909 21 H 0.073 0.927 22 H 0.059 0.941 23 H 0.346 0.654 24 H 0.003 0.997 25 H 0.070 0.930 26 H 0.267 0.733 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.058 0.942 31 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.114 0.544 9.626 12.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.028 4.028 3 H 0.101 0.899 4 N -0.304 5.304 5 C -0.014 4.014 6 C -0.003 4.003 7 C -0.615 4.615 8 H 0.054 0.946 9 C -0.219 4.219 10 N -0.567 5.567 11 Si 0.928 3.072 12 H -0.210 1.210 13 H -0.204 1.204 14 H -0.201 1.201 15 C -0.203 4.203 16 C -0.219 4.219 17 C 0.328 3.672 18 O -0.433 6.433 19 O -0.315 6.315 20 H 0.109 0.891 21 H 0.092 0.908 22 H 0.078 0.922 23 H 0.166 0.834 24 H 0.022 0.978 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.113 0.887 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -7.090 0.526 8.839 11.343 hybrid contribution -0.334 -0.142 0.763 0.845 sum -7.425 0.384 9.602 12.144 Atomic orbital electron populations 1.21703 0.89384 1.03200 1.03855 1.21362 0.99655 0.96508 0.85239 0.89888 1.60559 1.35295 1.31994 1.02509 1.21398 0.97689 0.92142 0.90160 1.19123 0.93404 0.98954 0.88854 1.21523 0.92264 0.98470 1.49210 0.94606 1.26896 1.06279 0.95633 0.93095 1.70846 1.27763 1.10074 1.48037 0.83073 0.72203 0.74602 0.77317 1.20995 1.20447 1.20124 1.22761 0.97656 0.94708 1.05157 1.22723 1.03682 0.97194 0.98326 1.23580 0.75945 0.81903 0.85753 1.90729 1.37348 1.27698 1.87505 1.84462 1.71916 1.58745 1.16354 0.89061 0.90846 0.92161 0.83373 0.97843 0.91134 0.92269 0.91300 0.88723 0.89464 0.92375 0.70972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.94 9.34 71.98 0.67 -2.26 16 2 C 0.08 2.54 3.13 44.17 0.14 2.68 16 3 H 0.08 2.43 7.86 -2.39 -0.02 2.41 16 4 N -0.67 -26.65 6.15 -495.44 -3.05 -29.70 16 5 C 0.12 4.91 5.24 86.30 0.45 5.37 16 6 C 0.00 -0.13 1.14 -52.92 -0.06 -0.19 16 7 C -0.58 -32.16 8.24 25.60 0.21 -31.95 16 8 H 0.04 2.07 7.82 -2.91 -0.02 2.05 16 9 C -0.02 -1.06 5.39 84.65 0.46 -0.61 16 10 N -0.93 -54.98 13.57 21.45 0.29 -54.68 16 11 Si 1.10 51.16 29.91 68.60 2.05 53.21 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 13 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 14 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 15 C -0.17 -7.13 9.96 30.62 0.30 -6.82 16 16 C -0.18 -8.22 8.74 30.62 0.27 -7.95 16 17 C 0.49 14.56 7.65 71.24 0.55 15.10 16 18 O -0.54 -20.73 16.40 21.97 0.36 -20.37 16 19 O -0.50 -10.30 13.33 -51.39 -0.68 -10.99 16 20 H 0.09 1.67 8.11 -2.39 -0.02 1.65 16 21 H 0.07 1.70 7.39 -2.39 -0.02 1.68 16 22 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.35 16.03 6.94 -89.70 -0.62 15.41 16 24 H 0.00 0.16 7.83 -2.39 -0.02 0.14 16 25 H 0.07 2.62 7.29 -2.39 -0.02 2.60 16 26 H 0.27 15.60 6.20 -92.71 -0.57 15.03 16 27 H 0.07 3.04 8.14 -2.38 -0.02 3.03 16 28 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 29 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 30 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.43 4.95 9.10 -74.06 -0.67 4.28 16 Total: -1.00 -67.00 268.75 2.00 -65.00 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 0.04 Total: 24.16 kcal Atomic # 6 Polarization: -29.62 SS G_CDS: 2.99 Total: -26.63 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -2.76 Total: -84.39 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.32 Total: -31.36 kcal Atomic # 14 Polarization: 51.16 SS G_CDS: 2.05 Total: 53.21 kcal Total: -67.00 2.00 -65.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854732.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.162 kcal (2) G-P(sol) polarization free energy of solvation -66.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds