Wall clock time and date at job start Sun Mar 29 2020 21:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47137 * 2 1 4 4 N 1.46897 * 109.47116 * 120.00727 * 2 1 3 5 5 C 1.46906 * 110.99813 * 275.20238 * 4 2 1 6 6 C 1.53005 * 109.46872 * 174.42839 * 5 4 2 7 7 C 1.50701 * 115.56355 * 39.61435 * 6 5 4 8 8 H 1.07996 * 119.99676 * 268.97406 * 7 6 5 9 9 C 1.37874 * 119.99803 * 88.97102 * 7 6 5 10 10 N 1.31518 * 119.99822 * 183.13735 * 9 7 6 11 11 Si 1.86796 * 120.00314 * 3.13699 * 9 7 6 12 12 H 1.48497 * 109.47314 * 88.45084 * 11 9 7 13 13 H 1.48499 * 109.47112 * 208.45191 * 11 9 7 14 14 H 1.48502 * 109.46869 * 328.45042 * 11 9 7 15 15 C 1.52996 * 117.49350 * 185.30159 * 6 5 4 16 16 C 1.53003 * 60.03364 * 107.47952 * 15 6 5 17 17 C 1.50700 * 109.46662 * 240.00462 * 2 1 3 18 18 O 1.20828 * 119.99925 * 267.01649 * 17 2 1 19 19 O 1.34225 * 120.00201 * 87.02019 * 17 2 1 20 20 H 1.08994 * 109.47137 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.46569 * 299.99269 * 1 2 3 22 22 H 1.08996 * 109.47206 * 59.99383 * 1 2 3 23 23 H 1.00902 * 110.99991 * 151.25329 * 4 2 1 24 24 H 1.08995 * 109.46951 * 54.42464 * 5 4 2 25 25 H 1.08996 * 109.46911 * 294.42565 * 5 4 2 26 26 H 0.96995 * 120.00334 * 180.02562 * 10 9 7 27 27 H 1.09003 * 117.49466 * 214.97547 * 15 6 5 28 28 H 1.08998 * 117.50558 * 359.97438 * 15 6 5 29 29 H 1.08992 * 117.50410 * 107.49603 * 16 15 6 30 30 H 1.09003 * 117.49507 * 252.52689 * 16 15 6 31 31 H 0.96706 * 117.00149 * 180.02562 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0779 0.2212 2.3481 6 6 2.4574 -0.5637 3.6054 7 6 3.5053 -1.6299 3.4149 8 1 3.2099 -2.6406 3.1750 9 6 4.8411 -1.3149 3.5468 10 7 5.7580 -2.2301 3.3201 11 14 5.3486 0.4116 4.0475 12 1 5.4028 0.5017 5.5287 13 1 6.6881 0.7169 3.4837 14 1 4.3585 1.3888 3.5279 15 6 2.4496 0.1891 4.9373 16 6 1.3530 -0.8329 4.6306 17 6 2.0323 -0.7103 -1.2306 18 8 2.2849 -1.8910 -1.1857 19 8 2.1990 -0.0314 -2.3764 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 2.9189 -1.1178 1.0296 24 1 1.1032 0.6875 2.4911 25 1 2.8256 0.9921 2.1615 26 1 6.6977 -2.0087 3.4132 27 1 3.2023 -0.0868 5.6758 28 1 2.1745 1.2436 4.9178 29 1 1.3844 -1.7811 5.1672 30 1 0.3566 -0.4506 4.4089 31 1 2.5229 -0.5300 -3.1390 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854733.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:54 Heat of formation + Delta-G solvation = -64.756478 kcal Electronic energy + Delta-G solvation = -14570.803747 eV Core-core repulsion = 12046.131013 eV Total energy + Delta-G solvation = -2524.672734 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.12139 -37.43077 -36.02252 -34.93553 -32.05529 -30.12913 -25.97708 -25.28546 -23.59617 -21.59995 -20.16811 -19.07109 -17.90917 -16.68853 -15.96729 -15.63293 -15.07246 -14.70323 -13.89110 -13.68675 -13.26736 -12.74381 -12.44807 -12.28329 -11.97807 -11.74373 -11.37822 -11.30819 -11.08884 -10.69882 -10.36832 -10.15883 -10.03064 -9.48076 -9.00815 -8.61144 -8.43136 -7.73272 -6.07268 -4.09070 2.41367 3.12172 3.28172 3.38011 3.41032 4.42735 4.57940 5.03830 5.21676 5.22601 5.34046 5.42458 5.78853 5.82540 5.94057 6.06595 6.18295 6.26431 6.34545 6.49233 6.53077 6.63053 6.77199 6.99686 7.17528 7.65249 7.80044 8.01256 8.16242 8.59251 9.02173 9.55352 11.04329 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.029793 B = 0.010619 C = 0.009131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.585655 B = 2636.192800 C = 3065.594757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.093 3.907 3 H 0.067 0.933 4 N -0.653 5.653 5 C 0.097 3.903 6 C 0.009 3.991 7 C -0.478 4.478 8 H 0.083 0.917 9 C 0.073 3.927 10 N -0.896 5.896 11 Si 0.879 3.121 12 H -0.279 1.279 13 H -0.298 1.298 14 H -0.261 1.261 15 C -0.208 4.208 16 C -0.174 4.174 17 C 0.471 3.529 18 O -0.491 6.491 19 O -0.523 6.523 20 H 0.069 0.931 21 H 0.071 0.929 22 H 0.058 0.942 23 H 0.368 0.632 24 H 0.053 0.947 25 H 0.023 0.977 26 H 0.263 0.737 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.988 7.725 -6.757 13.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.019 4.019 3 H 0.085 0.915 4 N -0.291 5.291 5 C -0.032 4.032 6 C 0.007 3.993 7 C -0.515 4.515 8 H 0.100 0.900 9 C -0.129 4.129 10 N -0.534 5.534 11 Si 0.708 3.292 12 H -0.205 1.205 13 H -0.225 1.225 14 H -0.186 1.186 15 C -0.246 4.246 16 C -0.211 4.211 17 C 0.312 3.688 18 O -0.376 6.376 19 O -0.335 6.335 20 H 0.088 0.912 21 H 0.090 0.910 22 H 0.077 0.923 23 H 0.191 0.809 24 H 0.072 0.928 25 H 0.041 0.959 26 H 0.073 0.927 27 H 0.105 0.895 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -8.451 7.302 -6.259 12.803 hybrid contribution 1.484 1.123 -0.365 1.897 sum -6.967 8.425 -6.624 12.783 Atomic orbital electron populations 1.21735 0.91878 1.03388 1.02075 1.21170 0.97703 0.96526 0.86455 0.91495 1.60477 1.36865 1.31182 1.00567 1.21683 0.97893 0.92606 0.91032 1.19338 0.97492 0.96991 0.85441 1.20288 0.88239 0.95442 1.47577 0.89952 1.25037 0.96524 0.96694 0.94678 1.69909 1.00752 1.33751 1.48975 0.86899 0.77225 0.86026 0.79094 1.20494 1.22524 1.18554 1.22994 1.03018 0.95570 1.03031 1.22828 0.92679 0.99425 1.06189 1.23742 0.74297 0.86291 0.84515 1.90768 1.45643 1.16826 1.84339 1.84548 1.79718 1.47384 1.21842 0.91191 0.90971 0.92304 0.80853 0.92826 0.95862 0.92673 0.89540 0.91142 0.89707 0.91043 0.73614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 9.39 37.16 0.35 -1.40 16 2 C 0.09 1.48 3.11 -68.86 -0.21 1.26 16 3 H 0.07 0.98 7.86 -51.93 -0.41 0.57 16 4 N -0.65 -13.10 5.84 -107.95 -0.63 -13.73 16 5 C 0.10 1.95 5.48 -3.82 -0.02 1.93 16 6 C 0.01 0.20 1.24 -155.62 -0.19 0.00 16 7 C -0.48 -13.10 8.10 -34.44 -0.28 -13.38 16 8 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 9 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 10 N -0.90 -27.12 13.96 55.43 0.77 -26.35 16 11 Si 0.88 21.49 24.84 -169.99 -4.22 17.27 16 12 H -0.28 -6.74 7.05 56.52 0.40 -6.35 16 13 H -0.30 -7.39 7.11 56.52 0.40 -6.98 16 14 H -0.26 -6.00 5.66 56.52 0.32 -5.68 16 15 C -0.21 -4.40 7.37 -26.73 -0.20 -4.60 16 16 C -0.17 -3.56 9.89 -26.69 -0.26 -3.82 16 17 C 0.47 7.61 7.32 36.01 0.26 7.88 16 18 O -0.49 -9.78 17.04 -18.75 -0.32 -10.10 16 19 O -0.52 -6.44 13.42 -39.24 -0.53 -6.96 16 20 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 21 H 0.07 0.90 7.37 -51.93 -0.38 0.52 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.37 8.47 6.98 -39.29 -0.27 8.19 16 24 H 0.05 0.94 7.11 -51.93 -0.37 0.58 16 25 H 0.02 0.48 6.91 -51.93 -0.36 0.12 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.09 1.94 6.74 -51.93 -0.35 1.59 16 28 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.08 1.78 8.14 -51.93 -0.42 1.35 16 30 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 31 H 0.41 3.22 9.10 45.56 0.41 3.64 16 LS Contribution 261.38 15.07 3.94 3.94 Total: -1.00 -31.59 261.38 -5.12 -36.71 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -3.48 Total: 9.40 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -0.65 Total: -10.19 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.14 Total: -40.08 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.85 Total: -17.06 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.22 Total: 17.27 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.59 -5.12 -36.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854733.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.046 kcal (2) G-P(sol) polarization free energy of solvation -31.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds