Wall clock time and date at job start Sun Mar 29 2020 21:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47137 * 2 1 4 4 N 1.46897 * 109.47116 * 120.00727 * 2 1 3 5 5 C 1.46906 * 110.99813 * 275.20238 * 4 2 1 6 6 C 1.53005 * 109.46872 * 174.42839 * 5 4 2 7 7 C 1.50701 * 115.56355 * 39.61435 * 6 5 4 8 8 H 1.07996 * 119.99676 * 268.97406 * 7 6 5 9 9 C 1.37874 * 119.99803 * 88.97102 * 7 6 5 10 10 N 1.31518 * 119.99822 * 183.13735 * 9 7 6 11 11 Si 1.86796 * 120.00314 * 3.13699 * 9 7 6 12 12 H 1.48497 * 109.47314 * 88.45084 * 11 9 7 13 13 H 1.48499 * 109.47112 * 208.45191 * 11 9 7 14 14 H 1.48502 * 109.46869 * 328.45042 * 11 9 7 15 15 C 1.52996 * 117.49350 * 185.30159 * 6 5 4 16 16 C 1.53003 * 60.03364 * 107.47952 * 15 6 5 17 17 C 1.50700 * 109.46662 * 240.00462 * 2 1 3 18 18 O 1.20828 * 119.99925 * 267.01649 * 17 2 1 19 19 O 1.34225 * 120.00201 * 87.02019 * 17 2 1 20 20 H 1.08994 * 109.47137 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.46569 * 299.99269 * 1 2 3 22 22 H 1.08996 * 109.47206 * 59.99383 * 1 2 3 23 23 H 1.00902 * 110.99991 * 151.25329 * 4 2 1 24 24 H 1.08995 * 109.46951 * 54.42464 * 5 4 2 25 25 H 1.08996 * 109.46911 * 294.42565 * 5 4 2 26 26 H 0.96995 * 120.00334 * 180.02562 * 10 9 7 27 27 H 1.09003 * 117.49466 * 214.97547 * 15 6 5 28 28 H 1.08998 * 117.50558 * 359.97438 * 15 6 5 29 29 H 1.08992 * 117.50410 * 107.49603 * 16 15 6 30 30 H 1.09003 * 117.49507 * 252.52689 * 16 15 6 31 31 H 0.96706 * 117.00149 * 180.02562 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0779 0.2212 2.3481 6 6 2.4574 -0.5637 3.6054 7 6 3.5053 -1.6299 3.4149 8 1 3.2099 -2.6406 3.1750 9 6 4.8411 -1.3149 3.5468 10 7 5.7580 -2.2301 3.3201 11 14 5.3486 0.4116 4.0475 12 1 5.4028 0.5017 5.5287 13 1 6.6881 0.7169 3.4837 14 1 4.3585 1.3888 3.5279 15 6 2.4496 0.1891 4.9373 16 6 1.3530 -0.8329 4.6306 17 6 2.0323 -0.7103 -1.2306 18 8 2.2849 -1.8910 -1.1857 19 8 2.1990 -0.0314 -2.3764 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 2.9189 -1.1178 1.0296 24 1 1.1032 0.6875 2.4911 25 1 2.8256 0.9921 2.1615 26 1 6.6977 -2.0087 3.4132 27 1 3.2023 -0.0868 5.6758 28 1 2.1745 1.2436 4.9178 29 1 1.3844 -1.7811 5.1672 30 1 0.3566 -0.4506 4.4089 31 1 2.5229 -0.5300 -3.1390 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854733.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:53 Heat of formation + Delta-G solvation = -89.469472 kcal Electronic energy + Delta-G solvation = -14571.875383 eV Core-core repulsion = 12046.131013 eV Total energy + Delta-G solvation = -2525.744370 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.38171 -39.05686 -37.24273 -36.36185 -34.19060 -31.44207 -27.81201 -26.82038 -24.99345 -23.25021 -21.38880 -20.88353 -19.19012 -18.25680 -17.68376 -16.93429 -16.78411 -16.14265 -15.53053 -15.22095 -14.72641 -14.52932 -14.06558 -13.62416 -13.27746 -13.07741 -12.91556 -12.73058 -12.56797 -12.40917 -12.02720 -11.89229 -11.42377 -11.33680 -10.92492 -10.56391 -10.22805 -9.22632 -8.24200 -6.29639 1.15755 1.36305 1.37898 1.50264 1.99545 2.38706 3.04602 3.14499 3.47728 4.06841 4.10468 4.26484 4.31069 4.43616 4.53728 4.67667 4.82422 4.87538 4.91306 4.96151 5.14970 5.29151 5.35178 5.54817 5.57070 5.77758 6.21043 6.33902 6.47245 6.81561 6.99090 7.37912 8.91756 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.029793 B = 0.010619 C = 0.009131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.585655 B = 2636.192800 C = 3065.594757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.087 3.913 3 H 0.090 0.910 4 N -0.673 5.673 5 C 0.104 3.896 6 C -0.023 4.023 7 C -0.469 4.469 8 H 0.026 0.974 9 C 0.014 3.986 10 N -0.953 5.953 11 Si 0.942 3.058 12 H -0.272 1.272 13 H -0.305 1.305 14 H -0.228 1.228 15 C -0.199 4.199 16 C -0.162 4.162 17 C 0.478 3.522 18 O -0.540 6.540 19 O -0.507 6.507 20 H 0.052 0.948 21 H 0.084 0.916 22 H 0.087 0.913 23 H 0.343 0.657 24 H 0.089 0.911 25 H 0.022 0.978 26 H 0.262 0.738 27 H 0.069 0.931 28 H 0.106 0.894 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.787 11.001 -6.939 16.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.024 4.024 3 H 0.107 0.893 4 N -0.308 5.308 5 C -0.025 4.025 6 C -0.024 4.024 7 C -0.507 4.507 8 H 0.044 0.956 9 C -0.183 4.183 10 N -0.593 5.593 11 Si 0.767 3.233 12 H -0.198 1.198 13 H -0.233 1.233 14 H -0.151 1.151 15 C -0.236 4.236 16 C -0.199 4.199 17 C 0.320 3.680 18 O -0.429 6.429 19 O -0.320 6.320 20 H 0.072 0.928 21 H 0.103 0.897 22 H 0.106 0.894 23 H 0.164 0.836 24 H 0.107 0.893 25 H 0.040 0.960 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.124 0.876 29 H 0.087 0.913 30 H 0.125 0.875 31 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -10.304 10.614 -6.465 16.144 hybrid contribution 1.985 0.010 -0.393 2.024 sum -8.318 10.624 -6.858 15.136 Atomic orbital electron populations 1.21732 0.89511 1.02977 1.04161 1.21382 0.99357 0.96836 0.84774 0.89256 1.60440 1.35356 1.32373 1.02602 1.21624 0.99574 0.91880 0.89375 1.19356 0.97814 0.97379 0.87855 1.20355 0.89796 0.94549 1.45987 0.95578 1.25885 0.96453 1.01018 0.94933 1.70083 1.01086 1.36475 1.51657 0.85882 0.77029 0.81454 0.78916 1.19814 1.23324 1.15117 1.23033 1.02539 0.97474 1.00560 1.22873 0.93951 0.98945 1.04126 1.23854 0.73113 0.85555 0.85487 1.90763 1.47971 1.18955 1.85205 1.84486 1.79035 1.46853 1.21656 0.92848 0.89671 0.89406 0.83621 0.89292 0.96007 0.92887 0.91257 0.87560 0.91342 0.87456 0.71211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 9.39 71.98 0.68 -2.23 16 2 C 0.09 2.56 3.11 44.17 0.14 2.70 16 3 H 0.09 2.26 7.86 -2.39 -0.02 2.25 16 4 N -0.67 -26.31 5.84 -495.45 -2.89 -29.21 16 5 C 0.10 3.87 5.48 86.30 0.47 4.34 16 6 C -0.02 -1.01 1.24 -52.90 -0.07 -1.08 16 7 C -0.47 -26.48 8.10 25.60 0.21 -26.27 16 8 H 0.03 1.71 8.06 -2.91 -0.02 1.69 16 9 C 0.01 0.78 5.47 84.65 0.46 1.25 16 10 N -0.95 -60.31 13.96 21.45 0.30 -60.01 16 11 Si 0.94 44.01 24.84 68.60 1.70 45.71 16 12 H -0.27 -12.37 7.05 99.48 0.70 -11.67 16 13 H -0.31 -14.55 7.11 99.48 0.71 -13.84 16 14 H -0.23 -9.40 5.66 99.48 0.56 -8.83 16 15 C -0.20 -7.70 7.37 30.59 0.23 -7.47 16 16 C -0.16 -6.20 9.89 30.62 0.30 -5.90 16 17 C 0.48 14.83 7.32 71.24 0.52 15.35 16 18 O -0.54 -21.84 17.04 21.96 0.37 -21.46 16 19 O -0.51 -11.19 13.42 -51.36 -0.69 -11.88 16 20 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 21 H 0.08 1.75 7.37 -2.38 -0.02 1.73 16 22 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.34 16.21 6.98 -89.69 -0.63 15.58 16 24 H 0.09 2.67 7.11 -2.39 -0.02 2.65 16 25 H 0.02 0.81 6.91 -2.39 -0.02 0.80 16 26 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 27 H 0.07 2.93 6.74 -2.39 -0.02 2.91 16 28 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 29 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 30 H 0.11 3.35 8.08 -2.39 -0.02 3.33 16 31 H 0.43 5.79 9.10 -74.05 -0.67 5.11 16 Total: -1.00 -71.91 261.38 1.43 -70.48 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: -0.31 Total: 25.67 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: 2.94 Total: -19.30 kcal Atomic # 7 Polarization: -86.63 SS G_CDS: -2.59 Total: -89.22 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -0.32 Total: -33.34 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.70 Total: 45.71 kcal Total: -71.91 1.43 -70.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854733.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.990 kcal (2) G-P(sol) polarization free energy of solvation -71.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds