Wall clock time and date at job start Sun Mar 29 2020 22:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99814 * 2 1 4 4 C 1.50694 * 109.47330 * 293.95439 * 3 2 1 5 5 H 1.07996 * 119.99970 * 0.02562 * 4 3 2 6 6 C 1.37886 * 120.00233 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99466 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99837 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47141 * 90.00346 * 8 6 4 10 10 H 1.48502 * 109.46609 * 210.00135 * 8 6 4 11 11 H 1.48499 * 109.47170 * 330.00120 * 8 6 4 12 12 C 1.46905 * 110.99995 * 123.95456 * 2 1 3 13 13 H 1.09005 * 109.47094 * 296.04522 * 12 2 1 14 14 C 1.50699 * 109.46749 * 176.04852 * 12 2 1 15 15 O 1.20825 * 120.00408 * 359.97438 * 14 12 2 16 16 O 1.34228 * 119.99690 * 179.97438 * 14 12 2 17 17 C 1.52993 * 109.47000 * 56.04513 * 12 2 1 18 18 C 1.52999 * 117.50089 * 248.74485 * 17 12 2 19 19 C 1.53004 * 117.49859 * 180.08657 * 17 12 2 20 20 H 1.08992 * 109.47459 * 59.99744 * 1 2 3 21 21 H 1.09004 * 109.47040 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47033 * 299.99847 * 1 2 3 23 23 H 1.09009 * 109.47296 * 53.95365 * 3 2 1 24 24 H 1.09002 * 109.47055 * 173.95064 * 3 2 1 25 25 H 0.97003 * 119.99500 * 180.02562 * 7 6 4 26 26 H 0.96698 * 117.00372 * 179.97438 * 16 14 12 27 27 H 1.09007 * 115.55356 * 34.41929 * 17 12 2 28 28 H 1.08997 * 117.49698 * 0.02562 * 18 17 12 29 29 H 1.08998 * 117.49930 * 145.02405 * 18 17 12 30 30 H 1.09002 * 117.49712 * 214.98345 * 19 17 12 31 31 H 1.09001 * 117.49796 * 359.97438 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0740 1.5115 -2.0484 6 6 2.0267 3.3496 -1.5284 7 7 2.7119 4.0019 -0.6148 8 14 1.5829 4.1868 -3.1382 9 1 0.2703 4.8667 -2.9971 10 1 2.6250 5.1884 -3.4789 11 1 1.5007 3.1710 -4.2183 12 6 1.9955 -0.7660 1.1376 13 1 1.7045 -0.2799 2.0688 14 6 3.4988 -0.8254 1.0505 15 8 4.0727 -0.2855 0.1345 16 8 4.2002 -1.4781 1.9905 17 6 1.4261 -2.1856 1.1037 18 6 0.4355 -2.5759 2.2025 19 6 1.8560 -3.1460 2.2146 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.5611 1.9274 0.8310 24 1 3.0797 1.3444 0.1083 25 1 2.9858 4.9183 -0.7765 26 1 5.1621 -1.4893 1.8920 27 1 1.2665 -2.6046 0.1101 28 1 0.1891 -1.8211 2.9492 29 1 -0.3756 -3.2519 1.9319 30 1 1.9789 -4.1967 1.9519 31 1 2.5449 -2.7664 2.9693 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084093042.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:50 Heat of formation + Delta-G solvation = -51.264628 kcal Electronic energy + Delta-G solvation = -14695.848289 eV Core-core repulsion = 12171.760605 eV Total energy + Delta-G solvation = -2524.087683 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.05354 -37.56201 -36.03284 -34.87459 -32.38189 -28.55743 -27.11893 -24.23398 -22.51670 -22.03113 -20.85513 -19.53778 -17.64088 -16.38483 -16.26589 -15.32092 -15.31095 -14.45213 -14.05914 -13.62996 -13.28337 -12.88293 -12.14546 -11.93051 -11.55945 -11.42208 -11.29650 -11.07528 -10.83209 -10.68370 -10.48748 -10.23501 -10.17987 -9.80464 -9.45664 -8.99945 -8.30743 -7.32605 -5.94200 -3.93336 2.78034 3.34383 3.36858 3.42594 3.47816 3.98224 4.47802 4.70868 4.97133 5.05766 5.22182 5.42023 5.52843 5.71500 5.77523 5.85295 5.99958 6.12949 6.23238 6.30495 6.38201 6.72325 6.92700 7.31049 7.34892 7.84160 8.16653 8.19171 8.45215 8.61403 9.11881 9.68240 11.17505 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043293 B = 0.008726 C = 0.007704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.594318 B = 3207.888976 C = 3633.807358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.523 5.523 3 C 0.176 3.824 4 C -0.498 4.498 5 H 0.062 0.938 6 C 0.053 3.947 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.128 3.872 13 H 0.065 0.935 14 C 0.475 3.525 15 O -0.472 6.472 16 O -0.525 6.525 17 C -0.142 4.142 18 C -0.177 4.177 19 C -0.171 4.171 20 H 0.078 0.922 21 H 0.052 0.948 22 H 0.014 0.986 23 H -0.015 1.015 24 H 0.060 0.940 25 H 0.260 0.740 26 H 0.401 0.599 27 H 0.116 0.884 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.010 -12.211 6.520 13.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.249 5.249 3 C 0.051 3.949 4 C -0.537 4.537 5 H 0.081 0.919 6 C -0.148 4.148 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.017 3.983 13 H 0.082 0.918 14 C 0.315 3.685 15 O -0.355 6.355 16 O -0.337 6.337 17 C -0.161 4.161 18 C -0.214 4.214 19 C -0.208 4.208 20 H 0.096 0.904 21 H 0.071 0.929 22 H 0.032 0.968 23 H 0.003 0.997 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.259 0.741 27 H 0.134 0.866 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.025 -12.083 5.883 13.591 hybrid contribution 0.195 1.054 -0.174 1.086 sum -1.830 -11.029 5.709 12.553 Atomic orbital electron populations 1.22225 0.87472 0.99788 1.01149 1.62028 1.07314 1.18477 1.37040 1.20156 0.97720 0.80289 0.96699 1.21068 1.34372 0.96702 1.01531 0.91947 1.24974 0.95417 0.97400 0.96968 1.69968 1.38570 1.11303 1.34158 0.86490 0.77830 0.79180 0.83852 1.20844 1.21301 1.19798 1.20650 0.86790 0.94643 0.96186 0.91796 1.23326 0.91112 0.74915 0.79151 1.90774 1.71402 1.40381 1.32977 1.84529 1.25417 1.71336 1.52410 1.22135 1.04017 0.93975 0.95924 1.23066 0.93213 1.03683 1.01405 1.23060 0.97589 0.98494 1.01653 0.90351 0.92931 0.96778 0.99691 0.92226 0.93071 0.74116 0.86577 0.88855 0.88758 0.88957 0.87650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 9.10 60.07 0.55 1.35 16 2 N -0.52 -11.69 4.42 -237.73 -1.05 -12.74 16 3 C 0.18 4.82 4.32 -4.98 -0.02 4.80 16 4 C -0.50 -14.64 8.52 -34.44 -0.29 -14.94 16 5 H 0.06 1.80 7.10 -52.49 -0.37 1.43 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -27.86 13.29 55.43 0.74 -27.12 16 8 Si 0.90 22.44 29.54 -169.99 -5.02 17.42 16 9 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 12 C 0.13 2.36 2.22 -68.87 -0.15 2.20 16 13 H 0.06 1.16 7.90 -51.93 -0.41 0.75 16 14 C 0.48 9.07 7.25 36.01 0.26 9.33 16 15 O -0.47 -11.20 14.64 -18.75 -0.27 -11.48 16 16 O -0.52 -7.40 11.36 -39.25 -0.45 -7.84 16 17 C -0.14 -2.06 3.71 -90.62 -0.34 -2.40 16 18 C -0.18 -2.06 10.07 -26.69 -0.27 -2.33 16 19 C -0.17 -2.01 9.45 -26.69 -0.25 -2.26 16 20 H 0.08 1.62 6.86 -51.93 -0.36 1.26 16 21 H 0.05 0.84 6.69 -51.93 -0.35 0.50 16 22 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 23 H -0.01 -0.42 8.12 -51.92 -0.42 -0.84 16 24 H 0.06 1.80 5.21 -51.93 -0.27 1.52 16 25 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 26 H 0.40 3.99 9.10 45.56 0.41 4.40 16 27 H 0.12 1.74 8.09 -51.92 -0.42 1.32 16 28 H 0.09 1.08 8.05 -51.93 -0.42 0.66 16 29 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.11 1.26 6.85 -51.93 -0.36 0.91 16 LS Contribution 261.38 15.07 3.94 3.94 Total: -1.00 -33.96 261.38 -6.09 -40.05 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -3.36 Total: 0.54 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -0.61 Total: -2.76 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: -0.31 Total: -39.87 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.72 Total: -19.32 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -33.96 -6.09 -40.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084093042.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.215 kcal (2) G-P(sol) polarization free energy of solvation -33.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds