Wall clock time and date at job start Sun Mar 29 2020 22:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99814 * 2 1 4 4 C 1.50694 * 109.47330 * 293.95439 * 3 2 1 5 5 H 1.07996 * 119.99970 * 0.02562 * 4 3 2 6 6 C 1.37886 * 120.00233 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99466 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99837 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47141 * 90.00346 * 8 6 4 10 10 H 1.48502 * 109.46609 * 210.00135 * 8 6 4 11 11 H 1.48499 * 109.47170 * 330.00120 * 8 6 4 12 12 C 1.46905 * 110.99995 * 123.95456 * 2 1 3 13 13 H 1.09005 * 109.47094 * 296.04522 * 12 2 1 14 14 C 1.50699 * 109.46749 * 176.04852 * 12 2 1 15 15 O 1.20825 * 120.00408 * 359.97438 * 14 12 2 16 16 O 1.34228 * 119.99690 * 179.97438 * 14 12 2 17 17 C 1.52993 * 109.47000 * 56.04513 * 12 2 1 18 18 C 1.52999 * 117.50089 * 248.74485 * 17 12 2 19 19 C 1.53004 * 117.49859 * 180.08657 * 17 12 2 20 20 H 1.08992 * 109.47459 * 59.99744 * 1 2 3 21 21 H 1.09004 * 109.47040 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47033 * 299.99847 * 1 2 3 23 23 H 1.09009 * 109.47296 * 53.95365 * 3 2 1 24 24 H 1.09002 * 109.47055 * 173.95064 * 3 2 1 25 25 H 0.97003 * 119.99500 * 180.02562 * 7 6 4 26 26 H 0.96698 * 117.00372 * 179.97438 * 16 14 12 27 27 H 1.09007 * 115.55356 * 34.41929 * 17 12 2 28 28 H 1.08997 * 117.49698 * 0.02562 * 18 17 12 29 29 H 1.08998 * 117.49930 * 145.02405 * 18 17 12 30 30 H 1.09002 * 117.49712 * 214.98345 * 19 17 12 31 31 H 1.09001 * 117.49796 * 359.97438 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0740 1.5115 -2.0484 6 6 2.0267 3.3496 -1.5284 7 7 2.7119 4.0019 -0.6148 8 14 1.5829 4.1868 -3.1382 9 1 0.2703 4.8667 -2.9971 10 1 2.6250 5.1884 -3.4789 11 1 1.5007 3.1710 -4.2183 12 6 1.9955 -0.7660 1.1376 13 1 1.7045 -0.2799 2.0688 14 6 3.4988 -0.8254 1.0505 15 8 4.0727 -0.2855 0.1345 16 8 4.2002 -1.4781 1.9905 17 6 1.4261 -2.1856 1.1037 18 6 0.4355 -2.5759 2.2025 19 6 1.8560 -3.1460 2.2146 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.5611 1.9274 0.8310 24 1 3.0797 1.3444 0.1083 25 1 2.9858 4.9183 -0.7765 26 1 5.1621 -1.4893 1.8920 27 1 1.2665 -2.6046 0.1101 28 1 0.1891 -1.8211 2.9492 29 1 -0.3756 -3.2519 1.9319 30 1 1.9789 -4.1967 1.9519 31 1 2.5449 -2.7664 2.9693 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084093042.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:49 Heat of formation + Delta-G solvation = -76.715311 kcal Electronic energy + Delta-G solvation = -14696.951913 eV Core-core repulsion = 12171.760605 eV Total energy + Delta-G solvation = -2525.191308 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.53695 -38.89717 -37.45692 -36.42251 -34.54052 -30.20651 -29.01771 -26.14225 -23.87810 -23.06585 -22.54648 -20.94206 -19.07664 -18.52936 -17.69339 -16.94888 -16.78288 -16.24308 -15.55565 -15.07153 -14.92904 -14.42582 -13.98282 -13.63064 -13.25332 -12.86942 -12.75674 -12.61511 -12.43775 -12.33540 -12.17398 -11.99184 -11.57598 -11.30988 -11.07367 -10.77364 -10.50146 -9.12120 -8.19668 -6.27830 1.28345 1.38404 1.41790 1.53040 2.01965 2.39921 2.88637 3.13549 3.31976 3.74661 4.00391 4.05586 4.23201 4.47960 4.52502 4.70414 4.73241 4.89062 5.06638 5.10825 5.12736 5.26980 5.34523 5.38948 5.62375 5.71418 6.06521 6.29323 6.51483 6.85865 7.12939 7.39382 8.92505 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043293 B = 0.008726 C = 0.007704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.594318 B = 3207.888976 C = 3633.807358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.536 5.536 3 C 0.191 3.809 4 C -0.517 4.517 5 H 0.062 0.938 6 C -0.005 4.005 7 N -0.938 5.938 8 Si 0.973 3.027 9 H -0.268 1.268 10 H -0.283 1.283 11 H -0.266 1.266 12 C 0.124 3.876 13 H 0.067 0.933 14 C 0.480 3.520 15 O -0.529 6.529 16 O -0.502 6.502 17 C -0.164 4.164 18 C -0.158 4.158 19 C -0.154 4.154 20 H 0.059 0.941 21 H 0.090 0.910 22 H 0.015 0.985 23 H -0.044 1.044 24 H 0.030 0.970 25 H 0.263 0.737 26 H 0.422 0.578 27 H 0.112 0.888 28 H 0.094 0.906 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.047 -13.763 6.641 15.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.262 5.262 3 C 0.066 3.934 4 C -0.556 4.556 5 H 0.080 0.920 6 C -0.202 4.202 7 N -0.579 5.579 8 Si 0.797 3.203 9 H -0.193 1.193 10 H -0.208 1.208 11 H -0.191 1.191 12 C 0.014 3.986 13 H 0.084 0.916 14 C 0.322 3.678 15 O -0.417 6.417 16 O -0.315 6.315 17 C -0.183 4.183 18 C -0.195 4.195 19 C -0.191 4.191 20 H 0.078 0.922 21 H 0.109 0.891 22 H 0.034 0.966 23 H -0.026 1.026 24 H 0.048 0.952 25 H 0.072 0.928 26 H 0.283 0.717 27 H 0.130 0.870 28 H 0.113 0.887 29 H 0.136 0.864 30 H 0.132 0.868 31 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.067 -13.680 6.040 15.266 hybrid contribution 0.566 1.441 -0.093 1.551 sum -2.501 -12.239 5.947 13.835 Atomic orbital electron populations 1.22228 0.85676 1.01955 1.00285 1.61847 1.09029 1.15648 1.39640 1.19738 0.95844 0.82897 0.94961 1.21423 1.34466 0.97375 1.02320 0.91969 1.25969 0.95114 0.98161 1.00925 1.70107 1.39601 1.11748 1.36404 0.85334 0.78054 0.77980 0.78937 1.19287 1.20829 1.19070 1.20784 0.86682 0.96577 0.94584 0.91588 1.23556 0.91707 0.73808 0.78692 1.90757 1.72457 1.42997 1.35488 1.84464 1.27153 1.69682 1.50221 1.21979 1.07295 0.91946 0.97092 1.23193 0.93704 1.03434 0.99191 1.23151 0.97685 0.98818 0.99438 0.92200 0.89105 0.96628 1.02644 0.95245 0.92838 0.71679 0.86955 0.88741 0.86396 0.86800 0.87826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.75 9.10 127.69 1.16 2.91 16 2 N -0.54 -24.33 4.42 -906.03 -4.01 -28.33 16 3 C 0.19 10.93 4.32 85.56 0.37 11.30 16 4 C -0.52 -31.21 8.52 25.60 0.22 -30.99 16 5 H 0.06 3.65 7.10 -2.91 -0.02 3.63 16 6 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 7 N -0.94 -59.54 13.29 21.45 0.28 -59.26 16 8 Si 0.97 46.48 29.54 68.60 2.03 48.51 16 9 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 C 0.12 4.53 2.22 44.17 0.10 4.63 16 13 H 0.07 2.39 7.90 -2.38 -0.02 2.37 16 14 C 0.48 18.42 7.25 71.24 0.52 18.93 16 15 O -0.53 -25.99 14.64 21.97 0.32 -25.67 16 16 O -0.50 -13.45 11.36 -51.40 -0.58 -14.03 16 17 C -0.16 -4.41 3.71 -10.79 -0.04 -4.45 16 18 C -0.16 -3.12 10.07 30.62 0.31 -2.81 16 19 C -0.15 -3.08 9.45 30.62 0.29 -2.79 16 20 H 0.06 2.48 6.86 -2.39 -0.02 2.46 16 21 H 0.09 2.73 6.69 -2.38 -0.02 2.72 16 22 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 23 H -0.04 -2.68 8.12 -2.38 -0.02 -2.70 16 24 H 0.03 1.87 5.21 -2.39 -0.01 1.86 16 25 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 26 H 0.42 7.74 9.10 -74.06 -0.67 7.06 16 27 H 0.11 3.13 8.09 -2.38 -0.02 3.11 16 28 H 0.09 1.88 8.05 -2.39 -0.02 1.86 16 29 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.11 1.83 8.14 -2.39 -0.02 1.82 16 31 H 0.10 2.14 6.85 -2.39 -0.02 2.12 16 Total: -1.00 -75.75 261.38 1.89 -73.86 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: 0.46 Total: 8.00 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 3.38 Total: -3.08 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -3.72 Total: -87.59 kcal Atomic # 8 Polarization: -39.44 SS G_CDS: -0.26 Total: -39.70 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -75.75 1.89 -73.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084093042.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.853 kcal (2) G-P(sol) polarization free energy of solvation -75.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds