Wall clock time and date at job start Sun Mar 29 2020 21:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 110.41927 * 2 1 4 4 O 1.44785 * 110.48768 * 122.45737 * 2 1 3 5 5 C 1.44425 * 105.29397 * 159.32595 * 4 2 1 6 6 C 1.54486 * 104.80278 * 319.45057 * 5 4 2 7 7 C 1.54476 * 110.36777 * 237.69107 * 2 1 3 8 8 H 1.09003 * 110.51261 * 98.41251 * 7 2 1 9 9 C 1.50692 * 110.51636 * 335.83288 * 7 2 1 10 10 O 1.21290 * 120.00415 * 280.00624 * 9 7 2 11 11 N 1.34782 * 120.00127 * 100.00311 * 9 7 2 12 12 C 1.46503 * 119.99849 * 5.74478 * 11 9 7 13 13 C 1.37097 * 120.00151 * 185.74321 * 11 9 7 14 14 H 1.08004 * 120.00167 * 334.83940 * 13 11 9 15 15 C 1.38952 * 119.99899 * 155.10855 * 13 11 9 16 16 N 1.31413 * 119.99984 * 354.08178 * 15 13 11 17 17 Si 1.86801 * 120.00120 * 174.08036 * 15 13 11 18 18 H 1.48500 * 109.46816 * 90.00182 * 17 15 13 19 19 H 1.48500 * 109.47305 * 210.00178 * 17 15 13 20 20 H 1.48497 * 109.47163 * 330.00359 * 17 15 13 21 21 H 1.09009 * 109.46932 * 187.40512 * 1 2 3 22 22 H 1.09001 * 109.47235 * 307.40049 * 1 2 3 23 23 H 1.08993 * 109.47387 * 67.40422 * 1 2 3 24 24 H 1.08995 * 110.37228 * 200.62445 * 5 4 2 25 25 H 1.08996 * 110.46963 * 78.32648 * 5 4 2 26 26 H 1.08998 * 110.51294 * 265.33181 * 6 5 4 27 27 H 1.09000 * 110.50671 * 142.62259 * 6 5 4 28 28 H 1.08999 * 109.47109 * 265.94092 * 12 11 9 29 29 H 1.09004 * 109.47051 * 25.94845 * 12 11 9 30 30 H 1.09003 * 109.46876 * 145.94074 * 12 11 9 31 31 H 0.97005 * 119.99998 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0368 -0.7279 1.1444 5 6 3.3911 -1.0896 0.7966 6 6 3.3193 -1.5056 -0.6894 7 6 2.0677 -0.7740 -1.2240 8 1 2.3407 -0.0841 -2.0225 9 6 1.0444 -1.7665 -1.7124 10 8 0.9153 -2.8322 -1.1477 11 7 0.2724 -1.4701 -2.7767 12 6 0.5120 -0.2400 -3.5355 13 6 -0.7370 -2.3197 -3.1493 14 1 -0.6825 -3.3678 -2.8943 15 6 -1.8276 -1.8334 -3.8599 16 7 -1.9496 -0.5426 -4.0740 17 14 -3.1202 -3.0144 -4.5108 18 1 -4.1826 -3.1973 -3.4894 19 1 -3.7173 -2.4598 -5.7522 20 1 -2.4884 -4.3250 -4.8080 21 1 -0.3633 -1.0192 0.1325 22 1 -0.3634 0.6242 0.8164 23 1 -0.3634 0.3948 -0.9487 24 1 3.7296 -1.9255 1.4087 25 1 4.0572 -0.2357 0.9198 26 1 3.1978 -2.5851 -0.7784 27 1 4.2112 -1.1754 -1.2219 28 1 -0.1335 0.5523 -3.1564 29 1 1.5550 0.0573 -3.4257 30 1 0.2929 -0.4144 -4.5889 31 1 -2.7108 -0.2031 -4.5704 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086757573.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:46 Heat of formation + Delta-G solvation = -71.421893 kcal Electronic energy + Delta-G solvation = -15161.260802 eV Core-core repulsion = 12636.299034 eV Total energy + Delta-G solvation = -2524.961768 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.75274 -37.45577 -34.60600 -32.12924 -31.19778 -30.94985 -26.60224 -25.73987 -24.30325 -21.63287 -21.46323 -18.22608 -16.90944 -16.63977 -15.48655 -15.12007 -14.97189 -14.57035 -13.90898 -13.80150 -12.71696 -12.36547 -11.95276 -11.68542 -11.62154 -11.46927 -11.40330 -11.04205 -10.86069 -10.64564 -10.49584 -10.39061 -10.31753 -10.07410 -9.37572 -8.99248 -8.28751 -7.62780 -6.26936 -3.86944 3.18401 3.26339 3.31603 3.84630 4.15297 4.31907 4.81671 5.01567 5.14407 5.35956 5.39787 5.45285 5.64735 5.80522 5.89881 5.95233 6.03800 6.17094 6.39294 6.43318 6.47741 6.54886 6.89048 6.94383 7.25683 7.29410 7.58668 8.18158 8.53185 9.22813 9.45909 10.03090 10.75761 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.051524 B = 0.009444 C = 0.009197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.310509 B = 2964.023148 C = 3043.756580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.094 3.906 3 H 0.067 0.933 4 O -0.369 6.369 5 C 0.050 3.950 6 C -0.141 4.141 7 C -0.142 4.142 8 H 0.094 0.906 9 C 0.466 3.534 10 O -0.582 6.582 11 N -0.450 5.450 12 C 0.112 3.888 13 C -0.303 4.303 14 H 0.096 0.904 15 C 0.030 3.970 16 N -0.888 5.888 17 Si 0.926 3.074 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.271 1.271 21 H 0.074 0.926 22 H 0.052 0.948 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.052 0.948 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.025 0.975 30 H 0.067 0.933 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.152 4.129 2.666 8.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.036 3.964 3 H 0.085 0.915 4 O -0.288 6.288 5 C -0.027 4.027 6 C -0.179 4.179 7 C -0.164 4.164 8 H 0.112 0.888 9 C 0.254 3.746 10 O -0.466 6.466 11 N -0.169 5.169 12 C -0.032 4.032 13 C -0.431 4.431 14 H 0.114 0.886 15 C -0.172 4.172 16 N -0.528 5.528 17 Si 0.753 3.247 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.195 1.195 21 H 0.093 0.907 22 H 0.071 0.929 23 H 0.099 0.901 24 H 0.104 0.896 25 H 0.070 0.930 26 H 0.107 0.893 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.043 0.957 30 H 0.086 0.914 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.806 3.678 3.000 8.298 hybrid contribution -0.560 -0.225 -0.729 0.946 sum 6.246 3.453 2.271 7.490 Atomic orbital electron populations 1.21884 0.92471 1.03953 1.02433 1.22835 0.96000 0.93768 0.83784 0.91493 1.89191 1.26728 1.74625 1.38275 1.23276 0.84919 0.99019 0.95466 1.22892 0.96408 1.03013 0.95598 1.22793 0.96118 0.98403 0.99097 0.88805 1.19607 0.85196 0.88329 0.81512 1.90509 1.72028 1.25589 1.58475 1.43559 1.28859 1.20583 1.23853 1.21592 0.95644 0.88046 0.97910 1.19618 0.97308 0.92382 1.33765 0.88617 1.25341 0.97764 0.96292 0.97803 1.69967 1.30477 1.11631 1.40681 0.85928 0.80520 0.80121 0.78112 1.20356 1.20943 1.19545 0.90712 0.92884 0.90115 0.89558 0.93011 0.89314 0.91106 0.92125 0.95655 0.91440 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 8.57 37.16 0.32 -2.68 16 2 C 0.09 1.72 3.85 -25.95 -0.10 1.62 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 4 O -0.37 -7.08 11.36 -35.23 -0.40 -7.48 16 5 C 0.05 0.77 7.63 37.94 0.29 1.06 16 6 C -0.14 -2.35 6.59 -25.16 -0.17 -2.51 16 7 C -0.14 -2.72 2.99 -90.21 -0.27 -2.99 16 8 H 0.09 1.59 5.61 -51.93 -0.29 1.30 16 9 C 0.47 11.41 4.55 -10.99 -0.05 11.36 16 10 O -0.58 -16.42 15.45 5.55 0.09 -16.34 16 11 N -0.45 -11.46 2.82 -122.19 -0.34 -11.80 16 12 C 0.11 2.47 8.18 59.85 0.49 2.96 16 13 C -0.30 -8.45 9.29 -14.93 -0.14 -8.59 16 14 H 0.10 2.82 7.39 -52.48 -0.39 2.43 16 15 C 0.03 0.80 5.23 -17.47 -0.09 0.71 16 16 N -0.89 -23.34 10.47 55.50 0.58 -22.76 16 17 Si 0.93 20.96 29.56 -169.99 -5.02 15.93 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 H 0.07 1.76 7.14 -51.92 -0.37 1.39 16 22 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 23 H 0.08 1.68 6.98 -51.93 -0.36 1.32 16 24 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.09 1.69 7.05 -51.93 -0.37 1.33 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.06 1.38 6.82 -51.93 -0.35 1.02 16 29 H 0.03 0.46 5.72 -51.93 -0.30 0.17 16 30 H 0.07 1.57 7.20 -51.93 -0.37 1.20 16 31 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 250.78 15.07 3.78 3.78 Total: -1.00 -30.99 250.78 -5.09 -36.08 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -4.05 Total: 1.63 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 0.28 Total: 0.95 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.24 Total: -34.56 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.31 Total: -23.82 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.99 -5.09 -36.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086757573.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.341 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds