Wall clock time and date at job start Sun Mar 29 2020 21:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 110.41927 * 2 1 4 4 O 1.44785 * 110.48768 * 122.45737 * 2 1 3 5 5 C 1.44425 * 105.29397 * 159.32595 * 4 2 1 6 6 C 1.54486 * 104.80278 * 319.45057 * 5 4 2 7 7 C 1.54476 * 110.36777 * 237.69107 * 2 1 3 8 8 H 1.09003 * 110.51261 * 98.41251 * 7 2 1 9 9 C 1.50692 * 110.51636 * 335.83288 * 7 2 1 10 10 O 1.21290 * 120.00415 * 280.00624 * 9 7 2 11 11 N 1.34782 * 120.00127 * 100.00311 * 9 7 2 12 12 C 1.46503 * 119.99849 * 5.74478 * 11 9 7 13 13 C 1.37097 * 120.00151 * 185.74321 * 11 9 7 14 14 H 1.08004 * 120.00167 * 334.83940 * 13 11 9 15 15 C 1.38952 * 119.99899 * 155.10855 * 13 11 9 16 16 N 1.31413 * 119.99984 * 354.08178 * 15 13 11 17 17 Si 1.86801 * 120.00120 * 174.08036 * 15 13 11 18 18 H 1.48500 * 109.46816 * 90.00182 * 17 15 13 19 19 H 1.48500 * 109.47305 * 210.00178 * 17 15 13 20 20 H 1.48497 * 109.47163 * 330.00359 * 17 15 13 21 21 H 1.09009 * 109.46932 * 187.40512 * 1 2 3 22 22 H 1.09001 * 109.47235 * 307.40049 * 1 2 3 23 23 H 1.08993 * 109.47387 * 67.40422 * 1 2 3 24 24 H 1.08995 * 110.37228 * 200.62445 * 5 4 2 25 25 H 1.08996 * 110.46963 * 78.32648 * 5 4 2 26 26 H 1.08998 * 110.51294 * 265.33181 * 6 5 4 27 27 H 1.09000 * 110.50671 * 142.62259 * 6 5 4 28 28 H 1.08999 * 109.47109 * 265.94092 * 12 11 9 29 29 H 1.09004 * 109.47051 * 25.94845 * 12 11 9 30 30 H 1.09003 * 109.46876 * 145.94074 * 12 11 9 31 31 H 0.97005 * 119.99998 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0368 -0.7279 1.1444 5 6 3.3911 -1.0896 0.7966 6 6 3.3193 -1.5056 -0.6894 7 6 2.0677 -0.7740 -1.2240 8 1 2.3407 -0.0841 -2.0225 9 6 1.0444 -1.7665 -1.7124 10 8 0.9153 -2.8322 -1.1477 11 7 0.2724 -1.4701 -2.7767 12 6 0.5120 -0.2400 -3.5355 13 6 -0.7370 -2.3197 -3.1493 14 1 -0.6825 -3.3678 -2.8943 15 6 -1.8276 -1.8334 -3.8599 16 7 -1.9496 -0.5426 -4.0740 17 14 -3.1202 -3.0144 -4.5108 18 1 -4.1826 -3.1973 -3.4894 19 1 -3.7173 -2.4598 -5.7522 20 1 -2.4884 -4.3250 -4.8080 21 1 -0.3633 -1.0192 0.1325 22 1 -0.3634 0.6242 0.8164 23 1 -0.3634 0.3948 -0.9487 24 1 3.7296 -1.9255 1.4087 25 1 4.0572 -0.2357 0.9198 26 1 3.1978 -2.5851 -0.7784 27 1 4.2112 -1.1754 -1.2219 28 1 -0.1335 0.5523 -3.1564 29 1 1.5550 0.0573 -3.4257 30 1 0.2929 -0.4144 -4.5889 31 1 -2.7108 -0.2031 -4.5704 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086757573.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:46 Heat of formation + Delta-G solvation = -93.135193 kcal Electronic energy + Delta-G solvation = -15162.202361 eV Core-core repulsion = 12636.299034 eV Total energy + Delta-G solvation = -2525.903327 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.35684 -39.14697 -36.60874 -33.92630 -32.92066 -32.37890 -28.44207 -27.35276 -26.14693 -23.14017 -22.92518 -19.97227 -18.85316 -18.35134 -17.05671 -16.76855 -16.40223 -16.29837 -15.67371 -15.57317 -14.43379 -14.00180 -13.69615 -13.39477 -13.22406 -13.16857 -13.07717 -12.79458 -12.60611 -12.31570 -12.13006 -12.10907 -11.79322 -11.68743 -11.00626 -10.70468 -10.22012 -9.63841 -8.29450 -5.97905 1.35931 1.39208 1.50881 2.01731 2.27468 2.95193 3.05675 3.11388 3.65564 3.82611 4.05667 4.15085 4.23729 4.39651 4.47968 4.54155 4.66552 4.77473 4.91115 4.95234 4.97624 5.12212 5.21620 5.27399 5.44967 5.47335 5.95190 6.13206 6.52747 7.20115 7.50472 8.07817 8.70560 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.051524 B = 0.009444 C = 0.009197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.310509 B = 2964.023148 C = 3043.756580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.096 3.904 3 H 0.114 0.886 4 O -0.399 6.399 5 C 0.048 3.952 6 C -0.139 4.139 7 C -0.141 4.141 8 H 0.123 0.877 9 C 0.458 3.542 10 O -0.633 6.633 11 N -0.463 5.463 12 C 0.120 3.880 13 C -0.341 4.341 14 H 0.064 0.936 15 C 0.001 3.999 16 N -0.895 5.895 17 Si 0.984 3.016 18 H -0.278 1.278 19 H -0.266 1.266 20 H -0.274 1.274 21 H 0.024 0.976 22 H 0.076 0.924 23 H 0.068 0.932 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.054 0.946 27 H 0.113 0.887 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.377 5.927 2.510 10.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.038 3.962 3 H 0.132 0.868 4 O -0.319 6.319 5 C -0.028 4.028 6 C -0.177 4.177 7 C -0.162 4.162 8 H 0.141 0.859 9 C 0.248 3.752 10 O -0.520 6.520 11 N -0.182 5.182 12 C -0.023 4.023 13 C -0.470 4.470 14 H 0.082 0.918 15 C -0.201 4.201 16 N -0.533 5.533 17 Si 0.809 3.191 18 H -0.204 1.204 19 H -0.190 1.190 20 H -0.199 1.199 21 H 0.044 0.956 22 H 0.095 0.905 23 H 0.086 0.914 24 H 0.111 0.889 25 H 0.113 0.887 26 H 0.073 0.927 27 H 0.131 0.869 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.045 5.511 2.828 10.153 hybrid contribution -0.940 -0.791 -0.654 1.392 sum 7.105 4.720 2.174 8.802 Atomic orbital electron populations 1.21782 0.94599 1.01116 1.02647 1.22975 0.94438 0.95703 0.83061 0.86847 1.89160 1.28960 1.75151 1.38630 1.23548 0.83832 1.01070 0.94354 1.22935 0.96800 1.00736 0.97249 1.22867 0.95324 0.97671 1.00358 0.85932 1.20598 0.85530 0.88563 0.80546 1.90466 1.73627 1.28114 1.59797 1.43794 1.28530 1.21149 1.24692 1.21558 0.98083 0.86357 0.96261 1.19512 0.99531 0.91885 1.36046 0.91798 1.26002 0.98866 0.97982 0.97259 1.70029 1.30875 1.12323 1.40121 0.85070 0.77913 0.78181 0.77981 1.20428 1.18995 1.19893 0.95627 0.90498 0.91358 0.88865 0.88746 0.92746 0.86879 0.92880 0.91352 0.93161 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.70 8.57 71.98 0.62 -5.08 16 2 C 0.10 3.25 3.85 31.10 0.12 3.37 16 3 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 4 O -0.40 -14.49 11.36 -148.98 -1.69 -16.18 16 5 C 0.05 1.32 7.63 72.49 0.55 1.87 16 6 C -0.14 -4.28 6.59 31.61 0.21 -4.07 16 7 C -0.14 -5.07 2.99 -10.53 -0.03 -5.10 16 8 H 0.12 3.64 5.61 -2.39 -0.01 3.63 16 9 C 0.46 22.80 4.55 87.65 0.40 23.20 16 10 O -0.63 -37.43 15.45 -3.06 -0.05 -37.47 16 11 N -0.46 -24.02 2.82 -658.87 -1.86 -25.88 16 12 C 0.12 5.20 8.18 127.77 1.04 6.25 16 13 C -0.34 -19.77 9.29 84.04 0.78 -18.99 16 14 H 0.06 4.01 7.39 -2.91 -0.02 3.99 16 15 C 0.00 0.03 5.23 84.93 0.44 0.47 16 16 N -0.89 -46.89 10.47 21.66 0.23 -46.66 16 17 Si 0.98 43.33 29.56 68.60 2.03 45.36 16 18 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 19 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 21 H 0.02 1.23 7.14 -2.38 -0.02 1.21 16 22 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 23 H 0.07 2.83 6.98 -2.39 -0.02 2.81 16 24 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.05 2.06 7.05 -2.39 -0.02 2.04 16 27 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.05 2.36 6.82 -2.39 -0.02 2.35 16 29 H 0.07 2.32 5.72 -2.38 -0.01 2.30 16 30 H 0.05 2.32 7.20 -2.39 -0.02 2.30 16 31 H 0.27 13.41 8.31 -92.70 -0.77 12.64 16 Total: -1.00 -70.60 250.78 3.91 -66.69 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 1.12 Total: 12.22 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 4.13 Total: 1.93 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -1.63 Total: -72.54 kcal Atomic # 8 Polarization: -51.92 SS G_CDS: -1.74 Total: -53.66 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -70.60 3.91 -66.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086757573.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.448 kcal (2) G-P(sol) polarization free energy of solvation -70.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds