Wall clock time and date at job start Sun Mar 29 2020 21:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.98927 * 2 1 4 4 O 1.43748 * 109.88193 * 238.91421 * 2 1 3 5 5 C 1.44379 * 106.97473 * 267.09305 * 4 2 1 6 6 C 1.54999 * 103.48979 * 319.93511 * 5 4 2 7 7 C 1.54105 * 109.87878 * 121.08584 * 2 1 3 8 8 H 1.08999 * 110.48545 * 358.58259 * 7 2 1 9 9 C 1.50702 * 110.48462 * 236.07126 * 7 2 1 10 10 O 1.21291 * 120.00262 * 335.82013 * 9 7 2 11 11 N 1.34779 * 119.99493 * 155.81722 * 9 7 2 12 12 C 1.46495 * 120.00359 * 355.62139 * 11 9 7 13 13 C 1.37098 * 119.99640 * 175.61640 * 11 9 7 14 14 H 1.08004 * 119.99900 * 29.35938 * 13 11 9 15 15 C 1.38946 * 120.00086 * 209.36521 * 13 11 9 16 16 N 1.31413 * 119.99977 * 14.93363 * 15 13 11 17 17 Si 1.86804 * 119.99957 * 194.93716 * 15 13 11 18 18 H 1.48506 * 109.46999 * 179.97438 * 17 15 13 19 19 H 1.48496 * 109.47089 * 299.99360 * 17 15 13 20 20 H 1.48495 * 109.47138 * 59.99846 * 17 15 13 21 21 H 1.08998 * 109.47244 * 298.91648 * 1 2 3 22 22 H 1.08998 * 109.46963 * 58.91998 * 1 2 3 23 23 H 1.09006 * 109.47019 * 178.91743 * 1 2 3 24 24 H 1.09000 * 110.62050 * 78.44059 * 5 4 2 25 25 H 1.09000 * 110.61492 * 201.27471 * 5 4 2 26 26 H 1.09000 * 110.90531 * 278.82651 * 6 5 4 27 27 H 1.08999 * 110.90462 * 155.22653 * 6 5 4 28 28 H 1.09002 * 109.47318 * 204.73950 * 12 11 9 29 29 H 1.09000 * 109.47253 * 324.74555 * 12 11 9 30 30 H 1.09001 * 109.47174 * 84.74466 * 12 11 9 31 31 H 0.97007 * 119.99613 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 8 2.0189 -0.6980 -1.1577 5 6 2.2281 -2.0714 -0.7647 6 6 2.8325 -1.9524 0.6576 7 6 2.0540 -0.7483 1.2411 8 1 1.2238 -1.0911 1.8586 9 6 2.9744 0.1371 2.0412 10 8 3.5513 1.0575 1.5015 11 7 3.1563 -0.0937 3.3565 12 6 2.3875 -1.1438 4.0292 13 6 4.0610 0.6541 4.0650 14 1 4.2721 1.6706 3.7674 15 6 4.7065 0.1042 5.1657 16 7 4.6843 -1.1955 5.3588 17 14 5.6056 1.2123 6.3711 18 1 6.2053 0.3866 7.4500 19 1 6.6785 1.9513 5.6585 20 1 4.6474 2.1799 6.9635 21 1 -0.3633 0.4969 0.8995 22 1 -0.3633 0.5305 -0.8801 23 1 -0.3633 -1.0275 -0.0194 24 1 1.2814 -2.6108 -0.7356 25 1 2.9273 -2.5620 -1.4417 26 1 3.9003 -1.7391 0.6099 27 1 2.6432 -2.8558 1.2374 28 1 2.3168 -0.9174 5.0931 29 1 1.3865 -1.1923 3.6007 30 1 2.8873 -2.1030 3.8943 31 1 5.1346 -1.5794 6.1275 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086757574.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:49 Heat of formation + Delta-G solvation = -79.582269 kcal Electronic energy + Delta-G solvation = -14898.620449 eV Core-core repulsion = 12373.304821 eV Total energy + Delta-G solvation = -2525.315628 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.74865 -37.63597 -34.63795 -32.18517 -31.33493 -30.84236 -26.86939 -26.01472 -24.35617 -21.68949 -21.09650 -18.61886 -16.98774 -16.63755 -15.72986 -15.38733 -14.57703 -14.14521 -14.03128 -13.64900 -13.02852 -12.83784 -12.22635 -12.09472 -11.71893 -11.51085 -11.28820 -11.22479 -11.00033 -10.88446 -10.57546 -10.42451 -10.38148 -10.14627 -9.30878 -8.99957 -8.35944 -7.59989 -6.33992 -3.92676 3.18599 3.24103 3.28130 3.82368 4.12877 4.25261 4.72490 4.99791 5.15616 5.22346 5.39830 5.42747 5.57355 5.66394 5.78679 5.83725 5.92225 6.05605 6.19503 6.30915 6.34961 6.45669 6.61684 6.76492 7.08274 7.26627 7.56574 8.17479 8.48443 9.18027 9.40506 9.98291 10.72116 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.054015 B = 0.008503 C = 0.008221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.253474 B = 3291.997772 C = 3404.951832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.083 3.917 3 H 0.110 0.890 4 O -0.372 6.372 5 C 0.047 3.953 6 C -0.134 4.134 7 C -0.134 4.134 8 H 0.092 0.908 9 C 0.460 3.540 10 O -0.582 6.582 11 N -0.444 5.444 12 C 0.110 3.890 13 C -0.312 4.312 14 H 0.095 0.905 15 C 0.034 3.966 16 N -0.879 5.879 17 Si 0.924 3.076 18 H -0.284 1.284 19 H -0.272 1.272 20 H -0.274 1.274 21 H 0.065 0.935 22 H 0.060 0.940 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.028 0.972 30 H 0.052 0.948 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.200 -3.825 -4.556 9.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.025 3.975 3 H 0.128 0.872 4 O -0.291 6.291 5 C -0.029 4.029 6 C -0.173 4.173 7 C -0.156 4.156 8 H 0.111 0.889 9 C 0.247 3.753 10 O -0.467 6.467 11 N -0.163 5.163 12 C -0.034 4.034 13 C -0.440 4.440 14 H 0.113 0.887 15 C -0.170 4.170 16 N -0.518 5.518 17 Si 0.751 3.249 18 H -0.210 1.210 19 H -0.197 1.197 20 H -0.199 1.199 21 H 0.084 0.916 22 H 0.079 0.921 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.107 0.893 26 H 0.100 0.900 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.802 -3.419 -4.838 9.020 hybrid contribution 0.387 0.080 1.079 1.149 sum -6.414 -3.339 -3.759 8.150 Atomic orbital electron populations 1.22282 0.96071 1.01893 1.02226 1.22734 0.92760 0.98364 0.83598 0.87243 1.88869 1.86193 1.20479 1.33581 1.23512 0.99181 0.84815 0.95425 1.22975 1.01375 0.97248 0.95674 1.22660 0.99018 0.96560 0.97367 0.88945 1.19819 0.85875 0.87322 0.82259 1.90512 1.52875 1.33434 1.69846 1.43488 1.35020 1.31929 1.05848 1.21461 0.91619 0.92090 0.98185 1.19533 1.18826 0.96630 1.08989 0.88716 1.25369 0.96643 0.95756 0.99217 1.69971 1.42921 1.09820 1.29060 0.86040 0.79624 0.79675 0.79609 1.20958 1.19743 1.19906 0.91632 0.92106 0.92700 0.92647 0.89339 0.90025 0.90103 0.91353 0.95341 0.92897 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 9.30 37.16 0.35 -2.01 16 2 C 0.08 1.50 3.62 -26.15 -0.09 1.41 16 3 H 0.11 2.26 6.77 -51.93 -0.35 1.91 16 4 O -0.37 -6.73 11.19 -35.23 -0.39 -7.12 16 5 C 0.05 0.70 7.66 38.21 0.29 0.99 16 6 C -0.13 -2.29 6.70 -24.72 -0.17 -2.46 16 7 C -0.13 -2.54 2.45 -90.24 -0.22 -2.76 16 8 H 0.09 1.56 5.65 -51.93 -0.29 1.26 16 9 C 0.46 11.37 6.66 -10.98 -0.07 11.29 16 10 O -0.58 -16.53 15.36 5.55 0.09 -16.45 16 11 N -0.44 -11.45 2.99 -122.20 -0.36 -11.81 16 12 C 0.11 2.42 8.41 59.84 0.50 2.93 16 13 C -0.31 -8.78 9.13 -14.93 -0.14 -8.91 16 14 H 0.10 2.79 7.52 -52.48 -0.39 2.40 16 15 C 0.03 0.90 4.97 -17.47 -0.09 0.82 16 16 N -0.88 -23.57 11.32 55.50 0.63 -22.95 16 17 Si 0.92 20.83 29.58 -169.99 -5.03 15.80 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.69 8.11 -51.93 -0.42 0.27 16 24 H 0.06 0.69 8.11 -51.93 -0.42 0.27 16 25 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.08 1.59 7.86 -51.93 -0.41 1.19 16 27 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.07 1.57 7.15 -51.93 -0.37 1.20 16 29 H 0.03 0.51 6.18 -51.93 -0.32 0.19 16 30 H 0.05 1.18 7.81 -51.93 -0.41 0.78 16 31 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 256.70 15.07 3.87 3.87 Total: -1.00 -31.36 256.70 -5.06 -36.42 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -4.21 Total: 0.95 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 0.36 Total: 1.29 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.26 Total: -34.76 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.31 Total: -23.57 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.03 Total: 15.80 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -31.36 -5.06 -36.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086757574.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.163 kcal (2) G-P(sol) polarization free energy of solvation -31.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds